RLG00000029970

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001817
Physical Location & Seq
Forward (+)
52445743 .. 52455653
9911 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029970

Sequence Viewer

Length: 2697 bp
ATGTATTCAGGGGCTGATCTGGAGGCCTTCCAGGCTGCAATGAATAAGGACATAGAAGGAAATGTGTCTACTTCCCAGCTGTCTGATTCGCACACTGCTGTTTTCTCTCAACGAAGCAATCGTACCTCTATTCAGCCATTACAGCAGTTTCATGCTGCTAGCCAGGATGAGAGTGCAGCTTCTCGAATTCGACATAACCAAAAGATTCTGCACCAGCAAGGATTGCATTCATTTGGACTGGAGCCAAAATCACAGCAGTTTGTAGCTGATTATAGACAACAAAAATATGATACTTCTGAGGAACTCAATCAGTTTCCTTTGCTTCAAGAAGGTGATCTCCAAAAAGGACAAGGAGAACAAAATACCAGCCAGATTCTTGAAACAACTGTAATGTCGATTCCGCAGAAAAATCCAATTTCAACACAGCAGGACATAACATCTAATCCAGAAAGTGAATTTCAGTATTTGAAGCTTCCGAAGATCGGTAGTCAAAAGGAAATGATCACAGAGCAGTCAAACATCGCAATACCATCAGACATATTACTACCTTGCTTATTGTCTCGTCTTGATAGAAACAGAGGCTTGCAACTTACCACTCTATATGGTAAACTTCAGAAAAAAGAACTTTCCAGAACTGATTTTTTCCGTCAAACGAGACGTGTTGTCGGGGAGCAGATGCTCAGATCAACAGTAATGGAAATACAGTTACAGATGAAAAGCTTGCAGCCTGCTCCTGAATGCCAGTTATCGCCTCTGGCTCAACTACCTCCACGGATGTTTTCTATCAGTGCAGGTTCTACACAGTTGACTGATCCTCCTTCATTCTCACAATATCAGAGAGGCGCTAACTCTGCCACAGACCTATCAGACATTTCATCCTCAACAGTTCAAGTGCAGGTTGATTCAAGCCATTCCCTTGTTGAAAACAGTGCTAAAAATCTGATGGACACTGGAAGTCGGTCAGATTCTCATGGAATGCAATTAAGTCTAATGCCTTCTTCTTGCACACGCGCTGCTGATCCTAAAAGGAAATGCTTCTCAGCATCCACGCGAGTACTTAATGAGAAGCAGCAACAACAATTGCACTACCCACAATCATCGGTTGCCATGTATGCAAATACTAGCGGTCAGTCAGGTGGGGAAGCACAAGAAATGAACATTATTGGTGTATCCAAATTAGTGATGCAAAATTCTGTGTTAGAACCTAGTAGACTGCAGGGTGGATCTCGTTTTCTCTTTACAAATAATTCAACATTACCGCAGAATCCAGTTCCTTGGCAATCCTCAAATAAAGGACAGAATTTTGGTCTTTTGTCCTCAATGGCTTATGTAAACCAGGGACCAGATGATCAAGCTTCTGATCAACAGCAGAAACCCCCATTAAATTCACAGGGATTGCCTTCTCTTTCTGCTCTACAAGTTGAACCAGAAAATGTATCGCCTGGAATATCAACAAATGAGTCTTTTGACAAGCATTCTTTAAAATCTACAAGCGTAGTGCCTTCATCAGCAGCAACAACAGTTCCCACAAAACCTGTATCTCCTCCCATAACAACACAAGTCGATGCTAATTTCACGTTAGGCCCTCATATTCATTCCAGAATTTCTCCTGCTGGAGTTGATAGTGGAACACCTCCAGGGAACGCTTTTATTCGCAAAAAGAAGCCTCGTAAAGCAGTTGGTTCTTCATCACAACCAACAAGTAAGAAGCAAAAAGTATCTGGAGCTTTTTTGTATCAAGGCATTGAGCAGGAAAATGATTTTACTGCTGTTAGTTGCATTAATCTTAGGGAAGAGGAAGAGCAGCTTCTTTCTGGTCCCCAGGAGGATTCTCGAGCTTCTGAAGTATCAGGACAAGCTATGCAAGAAGTAGAAGACGAGAGGCTGATTTTGCAGAAGATTCCCTTGATGAAAAAATTGGCAGAAATTGTGGTCAGATGTGGGTTGAAAAGTATAAGGAATGATGTGGAACGATGCTTGTCACTGTGTGTGGAGGAAAGAATGAGGGGACTAATAAATAATTTGATTGGATTGTCAAAGCAGCGAGTGGATGCTCAGAAACCAAGATGCCACACTATTACTACCTCGAATGTTCAACTGCAAATTATGAATCTCAATTTGGCAGCTAGGAAAGAATGGAAAAAAAGGCAGGCGGAGGAACAAGCGGTCCAGAAGCTTAGTGAACCTGATGTTAGCAATGGAGTCAACCACAGTAAGGACAAAGATCAAGGTTGTTCTAAATTGTTTAAGGCAAATAAAGAAGAAGATGATAAAATGAGTACAACAGCAGCAAATGTTGCAGCCCTTGCTGCTGTTGGAGGAGATGACTTGTTGTCAAAATGGAAACTTATCGCTGAGCGAGCCAGGAAAAAGCGTGAAGGTGGGTTTAATGCTCCATCTGTGTCCCAGGATGTGAACCACAAGCCCACAACAGCGGGAAGAATTATGATGTACAATCAAGAAGCAGAGAAAATGTGGGATGGAGCTGGGACTATAAGAAATTTTGGAGAAAACGACGTTGTCATGCCCCAAACAAGGGCGGTGCGTAGTATATCAGTAAAAGATGTGATTGCTGTTCTGGAACGGGAACCTTGGATGTCAAAGTCTCCTCTGACATATCTCGTATATGAGAGAAACCGTTCTGATGTCACTGTTGAAAACTCCAAATTGCTAAATACAGTGCCTATCATATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

899

Amino Acids

99.12

Weight (kDa)

8.45

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 176 - 235 2.7e-11 RCD1-SRO-TAF4 (RST) plant domain
TAF4 PF05236 586 - 873 1.4e-63 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 782, 886
AccI GTMKAC 2 cut(s) 68, 1210
AccII CGCG 2 cut(s) 1011, 1051
AciI CCGC 7 cut(s) 401, 1125, 1259, 2153, 2165, 2435, 2540
AclWI GGATC 3 cut(s) 806, 1013, 1231
AcsI RAATTY 7 cut(s) 186, 455, 1189, 1300, 1384, 1602, 2500
AcuI CTGAAG 2 cut(s) 596, 1863
AdeI CACNNNGTG 1 cut(s) 1988
AfaI GTAC 4 cut(s) 124, 1056, 2281, 2453
AfiI CCNNNNNNNGG 4 cut(s) 482, 2215, 2535, 2536
AflIII ACRYGT 1 cut(s) 658
AhdI GACNNNNNGTC 2 cut(s) 662, 2332
AjiI CACGTC 1 cut(s) 659
AjnI CCWGG 8 cut(s) 30, 162, 1335, 1441, 1636, 1821, 2363, 2406
AjuI GAANNNNNNNTTGG 2 cut(s) 2102, 2134
AloI GAACNNNNNNTCC 2 cut(s) 2151, 2183
Alw26I GTCTC 3 cut(s) 564, 649, 2610
AlwI GGATC 3 cut(s) 806, 1013, 1231
AlwNI CAGNNNCTG 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 1833
AoxI GGCC 2 cut(s) 24, 1582
ApoI RAATTY 7 cut(s) 186, 455, 1189, 1300, 1384, 1602, 2500
AseI ATTAAT 1 cut(s) 1782
Asp700I GAANNNNTTC 2 cut(s) 1034, 2638
AspLEI GCGC 2 cut(s) 845, 1013
AspS9I GGNCC 4 cut(s) 1340, 1583, 1817, 2167
AsuHPI GGTGA 1 cut(s) 344
AsuNHI GCTAGC 1 cut(s) 158
AvaI CYCGRG 1 cut(s) 1833
AvaII GGWCC 3 cut(s) 1340, 1817, 2167
BarI GAAGNNNNNNTAC 2 cut(s) 106, 138
BbsI GAAGAC 1 cut(s) 1881
BccI CCATC 4 cut(s) 538, 937, 2404, 2474
BciT130I CCWGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2365, 2408
BciVI GTATCC 1 cut(s) 1180
BclI TGATCA 3 cut(s) 501, 1348, 1360
BcoDI GTCTC 3 cut(s) 564, 649, 2610
BfaI CTAG 5 cut(s) 159, 1122, 1206, 2127, 2695
BfmI CTRYAG 1 cut(s) 1214
BfoI RGCGCY 1 cut(s) 846
BfuAI ACCTGC 2 cut(s) 782, 886
BfuI GTATCC 1 cut(s) 1180
BglI GCCNNNNNGGC 1 cut(s) 32
BlpI GCTNAGC 1 cut(s) 2355
BmcAI AGTACT 1 cut(s) 1056
Bme1390I CCNGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2365, 2408
Bme18I GGWCC 3 cut(s) 1340, 1817, 2167
BmeRI GACNNNNNGTC 2 cut(s) 662, 2332
BmeT110I CYCGRG 1 cut(s) 1833
BmgBI CACGTC 1 cut(s) 659
BmgT120I GGNCC 4 cut(s) 1340, 1583, 1817, 2167
BmiI GGNNCC 4 cut(s) 243, 1341, 1819, 2589
BmrFI CCNGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2365, 2408
BmsI GCATC 7 cut(s) 666, 1052, 1173, 1555, 1964, 2041, 2057
BmtI GCTAGC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 1881
BpmI CTGGAG 5 cut(s) 41, 260, 1620, 1635, 1743
Bpu1102I GCTNAGC 1 cut(s) 2355
BsaJI CCNNGG 7 cut(s) 770, 1274, 1336, 1637, 1821, 2406, 2591
BsaXI ACNNNNNCTCC 2 cut(s) 799, 829
Bsc4I CCNNNNNNNGG 4 cut(s) 482, 2215, 2535, 2536
Bse1I ACTGG 4 cut(s) 243, 742, 955, 1268
Bse3DI GCAATG 2 cut(s) 45, 2203
BseBI CCWGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2365, 2408
BseDI CCNNGG 7 cut(s) 770, 1274, 1336, 1637, 1821, 2406, 2591
BseGI GGATG 8 cut(s) 172, 780, 875, 1043, 2056, 2416, 2485, 2601
BseLI CCNNNNNNNGG 4 cut(s) 482, 2215, 2535, 2536
BseMI GCAATG 2 cut(s) 45, 2203
BseMII CTCAG 5 cut(s) 288, 694, 1053, 2069, 2346
BseNI ACTGG 4 cut(s) 243, 742, 955, 1268
BseRI GAGGAG 3 cut(s) 1533, 2334, 2598
BseYI CCCAGC 2 cut(s) 75, 2486
BsgI GTGCAG 4 cut(s) 194, 195, 810, 914
Bsh1236I CGCG 2 cut(s) 1011, 1051
BshFI GGCC 2 cut(s) 26, 1584
BsiHKCI CYCGRG 1 cut(s) 1833
BslFI GGGAC 5 cut(s) 1353, 1803, 2022, 2389, 2503
BslI CCNNNNNNNGG 4 cut(s) 482, 2215, 2535, 2536
BsmAI GTCTC 3 cut(s) 564, 649, 2610
BsmBI CGTCTC 1 cut(s) 649
BsmFI GGGAC 5 cut(s) 1353, 1803, 2022, 2389, 2503
BsmI GAATGC 4 cut(s) 226, 743, 981, 1474
BsnI GGCC 2 cut(s) 26, 1584
BsoBI CYCGRG 1 cut(s) 1833
Bsp1407I TGTACA 1 cut(s) 2451
Bsp1720I GCTNAGC 1 cut(s) 2355
BspACI CCGC 7 cut(s) 401, 1125, 1259, 2153, 2165, 2435, 2540
BspANI GGCC 2 cut(s) 26, 1584
BspCNI CTCAG 5 cut(s) 289, 693, 1052, 2068, 2347
BspFNI CGCG 2 cut(s) 1011, 1051
BspLI GGNNCC 4 cut(s) 243, 1341, 1819, 2589
BspMAI CTGCAG 1 cut(s) 1218
BspMI ACCTGC 2 cut(s) 782, 886
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 3 cut(s) 806, 1013, 1231
BspQI GCTCTTC 1 cut(s) 1794
BsrDI GCAATG 2 cut(s) 45, 2203
BsrGI TGTACA 1 cut(s) 2451
BsrI ACTGG 4 cut(s) 243, 742, 955, 1268
BssECI CCNNGG 7 cut(s) 770, 1274, 1336, 1637, 1821, 2406, 2591
BssT1I CCWWGG 2 cut(s) 1274, 2591
Bst2UI CCWGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2365, 2408
Bst6I CTCTTC 2 cut(s) 1788, 1794
BstAPI GCANNNNNTGC 3 cut(s) 223, 2297, 2306
BstAUI TGTACA 1 cut(s) 2451
BstC8I GCNNGC 6 cut(s) 160, 584, 722, 729, 2151, 2361
BstDEI CTNAG 7 cut(s) 297, 680, 1039, 1787, 2055, 2177, 2355
BstDSI CCRYGG 1 cut(s) 770
BstF5I GGATG 8 cut(s) 172, 780, 875, 1043, 2056, 2416, 2485, 2601
BstFNI CGCG 2 cut(s) 1011, 1051
BstH2I RGCGCY 1 cut(s) 846
BstHHI GCGC 2 cut(s) 845, 1013
BstMAI GTCTC 3 cut(s) 564, 649, 2610
BstNI CCWGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2365, 2408
BstSCI CCNGG 8 cut(s) 30, 162, 1335, 1441, 1636, 1821, 2363, 2406
BstSFI CTRYAG 1 cut(s) 1214
BstUI CGCG 2 cut(s) 1011, 1051
BstV2I GAAGAC 1 cut(s) 1881
BstX2I RGATCY 1 cut(s) 1223
BstXI CCANNNNNNTGG 1 cut(s) 1275
BstYI RGATCY 1 cut(s) 1223
BsuI GTATCC 1 cut(s) 1180
BsuRI GGCC 2 cut(s) 26, 1584
BtgI CCRYGG 1 cut(s) 770
BtgZI GCGATG 1 cut(s) 505
BtrI CACGTC 1 cut(s) 659
BtsCI GGATG 8 cut(s) 172, 780, 875, 1043, 2056, 2416, 2485, 2601
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 7 cut(s) 93, 793, 934, 948, 1982, 2649, 2685
BveI ACCTGC 2 cut(s) 782, 886
Cac8I GCNNGC 6 cut(s) 160, 584, 722, 729, 2151, 2361
CaiI CAGNNNCTG 1 cut(s) 14
CfoI GCGC 2 cut(s) 845, 1013
Cfr13I GGNCC 4 cut(s) 1340, 1583, 1817, 2167
Csp6I GTAC 4 cut(s) 123, 1055, 2280, 2452
CviAII CATG 4 cut(s) 152, 971, 1108, 2524
CviQI GTAC 4 cut(s) 123, 1055, 2280, 2452
DdeI CTNAG 7 cut(s) 297, 680, 1039, 1787, 2055, 2177, 2355
DraI TTTAAA 1 cut(s) 1482
DraIII CACNNNGTG 1 cut(s) 1988
DriI GACNNNNNGTC 2 cut(s) 662, 2332
Eam1104I CTCTTC 2 cut(s) 1788, 1794
Eam1105I GACNNNNNGTC 2 cut(s) 662, 2332
EarI CTCTTC 2 cut(s) 1788, 1794
EciI GGCGGA 1 cut(s) 2168
Eco130I CCWWGG 2 cut(s) 1274, 2591
Eco147I AGGCCT 1 cut(s) 26
Eco47I GGWCC 3 cut(s) 1340, 1817, 2167
Eco57I CTGAAG 2 cut(s) 596, 1863
Eco88I CYCGRG 1 cut(s) 1833
EcoO109I RGGNCCY 1 cut(s) 1583
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 8 cut(s) 30, 162, 1335, 1441, 1636, 1821, 2363, 2406
EcoT14I CCWWGG 2 cut(s) 1274, 2591
ErhI CCWWGG 2 cut(s) 1274, 2591
Esp3I CGTCTC 1 cut(s) 649
FaeI CATG 4 cut(s) 155, 974, 1111, 2527
FalI AAGNNNNNCTT 4 cut(s) 1791, 1823, 1889, 1921
FaqI GGGAC 5 cut(s) 1353, 1803, 2022, 2389, 2503
FatI CATG 4 cut(s) 151, 970, 1107, 2523
FauI CCCGC 1 cut(s) 2428
FbaI TGATCA 3 cut(s) 501, 1348, 1360
FblI GTMKAC 2 cut(s) 68, 1210
FokI GGATG 8 cut(s) 179, 787, 862, 1030, 2063, 2423, 2492, 2608
FspBI CTAG 5 cut(s) 159, 1122, 1206, 2127, 2695
GlaI GCGC 2 cut(s) 844, 1012
GsaI CCCAGC 2 cut(s) 79, 2490
GsuI CTGGAG 5 cut(s) 41, 260, 1620, 1635, 1743
HaeII RGCGCY 1 cut(s) 846
HaeIII GGCC 2 cut(s) 26, 1584
HhaI GCGC 2 cut(s) 845, 1013
Hin1II CATG 4 cut(s) 155, 974, 1111, 2527
Hin6I GCGC 2 cut(s) 843, 1011
HinP1I GCGC 2 cut(s) 843, 1011
HincII GTYRAC 2 cut(s) 807, 2206
HindII GTYRAC 2 cut(s) 807, 2206
HindIII AAGCTT 4 cut(s) 470, 718, 1353, 2174
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 8 cut(s) 69, 608, 807, 1211, 1333, 2183, 2206, 2416
Hpy8I GTNNAC 8 cut(s) 69, 608, 807, 1211, 1333, 2183, 2206, 2416
Hpy99I CGWCG 1 cut(s) 2519
HpyAV CCTTC 8 cut(s) 37, 50, 323, 828, 1005, 1410, 1512, 2372
HpyCH4IV ACGT 3 cut(s) 658, 1577, 2517
HpyF3I CTNAG 7 cut(s) 297, 680, 1039, 1787, 2055, 2177, 2355
HpySE526I ACGT 3 cut(s) 658, 1577, 2517
Hsp92II CATG 4 cut(s) 155, 974, 1111, 2527
HspAI GCGC 2 cut(s) 843, 1011
Ksp22I TGATCA 3 cut(s) 501, 1348, 1360
LguI GCTCTTC 1 cut(s) 1794
LmnI GCTCC 6 cut(s) 241, 670, 736, 1724, 2398, 2483
LweI GCATC 7 cut(s) 666, 1052, 1173, 1555, 1964, 2041, 2057
MaeI CTAG 5 cut(s) 159, 1122, 1206, 2127, 2695
MaeII ACGT 3 cut(s) 658, 1577, 2517
MaeIII GTNAC 3 cut(s) 705, 1980, 2647
MfeI CAATTG 1 cut(s) 1079
MflI RGATCY 1 cut(s) 1223
MlyI GAGTC 2 cut(s) 1469, 2211
MmeI TCCRAC 1 cut(s) 2296
MroXI GAANNNNTTC 2 cut(s) 1034, 2638
MseI TTAA 7 cut(s) 983, 1059, 1382, 1481, 1782, 2247, 2388
MspA1I CMGCKG 2 cut(s) 79, 2435
MspR9I CCNGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2365, 2408
MunI CAATTG 1 cut(s) 1079
Mva1269I GAATGC 4 cut(s) 226, 743, 981, 1474
MvaI CCWGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2365, 2408
MvnI CGCG 2 cut(s) 1011, 1051
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 4 cut(s) 155, 974, 1111, 2527
NlaIV GGNNCC 4 cut(s) 243, 1341, 1819, 2589
NmuCI GTSAC 2 cut(s) 1980, 2647
PaeR7I CTCGAG 1 cut(s) 1833
PceI AGGCCT 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 1794
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PctI GAATGC 4 cut(s) 226, 743, 981, 1474
PdmI GAANNNNTTC 2 cut(s) 1034, 2638
PflFI GACNNNGTC 1 cut(s) 2519
PleI GAGTC 2 cut(s) 1468, 2210
PpsI GAGTC 2 cut(s) 1468, 2210
PshBI ATTAAT 1 cut(s) 1782
Psp6I CCWGG 8 cut(s) 30, 162, 1335, 1441, 1636, 1821, 2363, 2406
PspFI CCCAGC 2 cut(s) 75, 2486
PspGI CCWGG 8 cut(s) 30, 162, 1335, 1441, 1636, 1821, 2363, 2406
PspN4I GGNNCC 4 cut(s) 243, 1341, 1819, 2589
PspPI GGNCC 4 cut(s) 1340, 1583, 1817, 2167
PstI CTGCAG 1 cut(s) 1218
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 1223
PsyI GACNNNGTC 1 cut(s) 2519
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 4 cut(s) 124, 1056, 2281, 2453
RsaNI GTAC 4 cut(s) 123, 1055, 2280, 2452
SapI GCTCTTC 1 cut(s) 1794
SaqAI TTAA 7 cut(s) 983, 1059, 1382, 1481, 1782, 2247, 2388
Sau96I GGNCC 4 cut(s) 1340, 1583, 1817, 2167
ScaI AGTACT 1 cut(s) 1056
SchI GAGTC 2 cut(s) 1469, 2211
ScrFI CCNGG 8 cut(s) 32, 164, 1337, 1443, 1638, 1823, 2365, 2408
SfaNI GCATC 7 cut(s) 666, 1052, 1173, 1555, 1964, 2041, 2057
SfcI CTRYAG 1 cut(s) 1214
Sfr274I CTCGAG 1 cut(s) 1833
SinI GGWCC 3 cut(s) 1340, 1817, 2167
SlaI CTCGAG 1 cut(s) 1833
SmlI CTYRAG 1 cut(s) 1833
SmoI CTYRAG 1 cut(s) 1833
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 7 cut(s) 401, 1125, 1259, 2153, 2165, 2435, 2540
SspMI CTAG 5 cut(s) 159, 1122, 1206, 2127, 2695
StuI AGGCCT 1 cut(s) 26
StyD4I CCNGG 8 cut(s) 30, 162, 1335, 1441, 1636, 1821, 2363, 2406
StyI CCWWGG 2 cut(s) 1274, 2591
TaiI ACGT 3 cut(s) 661, 1580, 2520
TaqI TCGA 6 cut(s) 184, 190, 395, 1563, 1834, 2087
TaqII GACCGA 1 cut(s) 948
TatI WGTACW 3 cut(s) 1054, 2279, 2451
Tru1I TTAA 7 cut(s) 983, 1059, 1382, 1481, 1782, 2247, 2388
Tru9I TTAA 7 cut(s) 983, 1059, 1382, 1481, 1782, 2247, 2388
TscAI CASTG 7 cut(s) 100, 793, 934, 955, 1989, 2656, 2685
TseFI GTSAC 2 cut(s) 1980, 2647
Tsp45I GTSAC 2 cut(s) 1980, 2647
TspGWI ACGGA 2 cut(s) 635, 787
TspRI CASTG 7 cut(s) 100, 793, 934, 955, 1989, 2656, 2685
Tth111I GACNNNGTC 1 cut(s) 2519
VpaK11BI GGWCC 3 cut(s) 1340, 1817, 2167
VspI ATTAAT 1 cut(s) 1782
XapI RAATTY 7 cut(s) 186, 455, 1189, 1300, 1384, 1602, 2500
XhoI CTCGAG 1 cut(s) 1833
XmiI GTMKAC 2 cut(s) 68, 1210
XmnI GAANNNNTTC 2 cut(s) 1034, 2638
XspI CTAG 5 cut(s) 159, 1122, 1206, 2127, 2695
ZrmI AGTACT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.