Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Reverse (-)

24502434 .. 24506269

Gene Structure 3836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTACTTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGCGATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCAAAGGCAAACTCTTCGAATATTCCACCGACTCTTGCATGGAGAGGATACTTGAACGCTATGATCGCTATTTATATTCAGACAAACAACTTGTTGGCCGAGACGTTTCACAAAGTGAAAATTGGGTTCTAGAACATGCTAAGCTCAAGGCAAGAGTTGAGGTACTTGAGAAGAACAAAAGGAATTTTATGGGGGAAGATCTTGATTCGTTGAGCTTGAAGGAGCTCCAAAGCTTGGAGCATCAGCTCGATGCAGCTATCAAGAGCATTAGGTCAAGAAAGAACCAAGCTATGTTCGAATCCATATCTGCGCTCCAGAAGAAGGATAAAGCCTTGCAAGATCACAACAATTCGCTTCTCAAAAAGATTAAGGAGAGGGAGAAGAAAACGGGTCAGCAAGAAGGACAATTAGTCCAATGCTCCAACTCTTCTTCAGTTCTTCTGCCTCAATACTGCGTAACCTCCTCCAGAGATGGCTTTGTGGAGAGAGTTGGGGGAGAGAACGGTGGTGCATCGTCGTTGACGGAACCAAACTCTCTGCTTCCGGCTTGGATGTTACGTCCTACCACTACGAACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0009933 GO:0010022 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048532 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

242

Amino Acids

27.54

Weight (kDa)

9.36

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.2e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	85 - 172	1.9e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	382
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	2 cut(s)	44, 564
AdeI	CACNNNGTG	1 cut(s)	263
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	382, 469
AgsI	TTSAA	2 cut(s)	203, 367
AhdI	GACNNNNNGTC	1 cut(s)	557
AluBI	AGCT	9 cut(s)	22, 95, 292, 363, 373, 381, 394, 404, 437
AluI	AGCT	9 cut(s)	22, 95, 292, 363, 373, 381, 394, 404, 437
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	243
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	331
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	1 cut(s)	460
AsuII	TTCGAA	2 cut(s)	165, 444
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	1 cut(s)	614
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciVI	GTATCC	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	189
BglII	AGATCT	2 cut(s)	102, 346
BisI	GCNGC	1 cut(s)	402
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	403
BmeRI	GACNNNNNGTC	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	675
BmsI	GCATC	4 cut(s)	109, 388, 397, 668
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	2 cut(s)	446, 598
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	288
Bpu14I	TTCGAA	2 cut(s)	165, 444
BpuEI	CTTGAG	3 cut(s)	71, 278, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 469
BseGI	GGATG	1 cut(s)	705
BseLI	CCNNNNNNNGG	2 cut(s)	382, 469
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	601
BseXI	GCAGC	1 cut(s)	413
BshFI	GGCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	692
BslI	CCNNNNNNNGG	2 cut(s)	382, 469
BsmAI	GTCTC	1 cut(s)	243
BsmBI	CGTCTC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	246
Bsp119I	TTCGAA	2 cut(s)	165, 444
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	5 cut(s)	42, 102, 211, 346, 487
Bsp1720I	GCTNAGC	1 cut(s)	288
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	675
BspT104I	TTCGAA	2 cut(s)	165, 444
BssMI	GATC	5 cut(s)	42, 102, 211, 346, 487
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	4 cut(s)	20, 151, 167, 580
BstBI	TTCGAA	2 cut(s)	165, 444
BstDEI	CTNAG	2 cut(s)	123, 288
BstF5I	GGATG	1 cut(s)	705
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	5 cut(s)	45, 105, 214, 349, 490
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	5 cut(s)	42, 102, 211, 346, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 213
BstNSI	RCATGY	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	2 cut(s)	102, 346
BstYI	RGATCY	2 cut(s)	102, 346
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	705
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	3 cut(s)	98, 187, 284
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	2 cut(s)	123, 288
DpnI	GATC	5 cut(s)	44, 104, 213, 348, 489
DpnII	GATC	5 cut(s)	42, 102, 211, 346, 487
DraIII	CACNNNGTG	1 cut(s)	263
DriI	GACNNNNNGTC	1 cut(s)	557
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	4 cut(s)	20, 151, 167, 580
Eam1105I	GACNNNNNGTC	1 cut(s)	557
EarI	CTCTTC	4 cut(s)	20, 151, 167, 580
Ecl136II	GAGCTC	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	2 cut(s)	44, 564
EcoICRI	GAGCTC	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	3 cut(s)	101, 190, 287
FaiI	YATR	8 cut(s)	99, 188, 210, 223, 285, 338, 440, 452
FatI	CATG	3 cut(s)	97, 186, 283
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	712
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	278
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	1 cut(s)	402
GsuI	CTGGAG	2 cut(s)	446, 598
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	1 cut(s)	692
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	3 cut(s)	101, 190, 287
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HincII	GTYRAC	1 cut(s)	669
HindII	GTYRAC	1 cut(s)	669
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	3 cut(s)	179, 353, 446
HpaII	CCGG	1 cut(s)	692
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	8 cut(s)	88, 98, 278, 350, 409, 423, 463, 615
Hpy8I	GTNNAC	1 cut(s)	669
Hpy99I	CGWCG	1 cut(s)	667
HpyAV	CCTTC	4 cut(s)	66, 361, 463, 542
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4IV	ACGT	2 cut(s)	252, 706
HpyCH4V	TGCA	4 cut(s)	186, 401, 484, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 213
HpyF3I	CTNAG	2 cut(s)	123, 288
HpySE526I	ACGT	2 cut(s)	252, 706
Hsp92II	CATG	3 cut(s)	101, 190, 287
HspAI	GCGC	1 cut(s)	458
Kzo9I	GATC	5 cut(s)	42, 102, 211, 346, 487
LmnI	GCTCC	5 cut(s)	370, 378, 385, 465, 572
LpnPI	CCDG	4 cut(s)	63, 476, 628, 705
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	4 cut(s)	109, 388, 397, 668
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	2 cut(s)	252, 706
MaeIII	GTNAC	3 cut(s)	55, 604, 702
MalI	GATC	5 cut(s)	44, 104, 213, 348, 489
MboI	GATC	5 cut(s)	42, 102, 211, 346, 487
MflI	RGATCY	2 cut(s)	102, 346
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	4 cut(s)	268, 331, 496, 554
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	8 cut(s)	21, 118, 186, 301, 516, 603, 619, 622
MseI	TTAA	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	1 cut(s)	692
MwoI	GCNNNNNNNGC	2 cut(s)	128, 213
NdeII	GATC	5 cut(s)	42, 102, 211, 346, 487
NlaIII	CATG	3 cut(s)	101, 190, 287
NlaIV	GGNNCC	1 cut(s)	675
NmeAIII	GCCGAG	1 cut(s)	272
NspI	RCATGY	1 cut(s)	287
NspV	TTCGAA	2 cut(s)	165, 444
PagI	TCATGA	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	353, 446
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	675
PsuI	RGATCY	2 cut(s)	102, 346
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	5 cut(s)	42, 102, 211, 346, 487
SchI	GAGTC	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	4 cut(s)	109, 388, 397, 668
SfuI	TTCGAA	2 cut(s)	165, 444
SmlI	CTYRAG	3 cut(s)	86, 293, 314
SmoI	CTYRAG	3 cut(s)	86, 293, 314
Sse9I	AATT	4 cut(s)	268, 331, 496, 554
SspI	AATATT	1 cut(s)	170
SspMI	CTAG	1 cut(s)	278
SstI	GAGCTC	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	653
TaiI	ACGT	2 cut(s)	255, 709
TaqI	TCGA	3 cut(s)	165, 396, 444
TasI	AATT	4 cut(s)	268, 331, 496, 554
TfiI	GAWTC	2 cut(s)	353, 446
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TseI	GCWGC	1 cut(s)	401
TspGWI	ACGGA	1 cut(s)	686
Van91I	CCANNNNNTGG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	331
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	287
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.