Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Reverse (-)

7619201 .. 7623454

Gene Structure 4254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13500.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGGAGGGGAAGGGTTCAGTTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTGACTTTCTCAAAGAGAAGGTCTGGGCTGCTCAAGAAGGCGCATGAGATTTCTGTGCTCTGCGATGCTGAGGTCGCTTTGATCGTCTTCTCCACCAAAGGCAAGCTGTTTGAGTACTCCACTGATTCTAGCATGGAAAGAATCCTGGAAAGGTATGAGAGATATTCATATGCAGAGAGGCAACTTCTTGGAAATAATCATGAGCAGCAGGATCAGGATCAGTCAAATGGAAACTGGACTCTGGAACATGCAAAGCTCAAAGCCAGGGTGGAGGTTTTACAGAAAAATCAAAGTCATTTCATGGGGGAAGACCTACAATCCTTAAGTATGAAACAGCTTCAGAATTTGGAGCAGCAACTTGATTCTGCTCTGAAGCACGTAAGGTCTAGAAAGAACCAACTTATGTACGAATCCATTTCAACGCTCCAGAAGAAGGATAAGGCGTTGCAGGAGCAAAATAATTTGCTGACAAAGAAGGTCAAAGAGAAGGAGAAAGCAGTAGCCGGCAGTGCTCCACAGTCCCAGGCGCAGGCACAGGTACGGGGACAGGCACAGGCACAGGTACAGGCACAAGCACAGGCACAAGCACAGGCTCAGTCACAATGGGAGCAAATGCAGAGGCAGAGCTTCGACTCCTCCACCAGTGCCCTTCTACCTCAGGCATTGCCGTCCATGAATTTCGGAGGCTCCTCTGGAGGTTATGATCAGGATGAAGAAATCCCACCTCCGCCTCAACATCAAGCCGCCGCCAACAGTAACACGCTCCTTCCGCCTTGGATGCTCCGCCACCTGAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

285

Amino Acids

32.24

Weight (kDa)

9.28

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 175	2.4e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	5 cut(s)	782, 798, 801, 824, 838
AclWI	GGATC	2 cut(s)	273, 279
AcsI	RAATTY	2 cut(s)	397, 730
AcuI	CTGAAG	2 cut(s)	377, 446
AfaI	GTAC	4 cut(s)	170, 461, 594, 618
AfiI	CCNNNNNNNGG	2 cut(s)	487, 583
AflII	CTTAAG	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	25, 474
AjnI	CCWGG	3 cut(s)	198, 317, 576
AluBI	AGCT	4 cut(s)	160, 310, 391, 681
AluI	AGCT	4 cut(s)	160, 310, 391, 681
Alw21I	GWGCWC	2 cut(s)	114, 568
AlwI	GGATC	2 cut(s)	273, 279
ApeKI	GCWGC	3 cut(s)	82, 259, 406
ApoI	RAATTY	2 cut(s)	397, 730
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	2 cut(s)	97, 583
AsuHPI	GGTGA	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	711
BaeGI	GKGCMC	1 cut(s)	703
BbsI	GAAGAC	2 cut(s)	133, 369
Bbv12I	GWGCWC	2 cut(s)	114, 568
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	69, 271, 418
BceAI	ACGGC	1 cut(s)	706
BciT130I	CCWGG	3 cut(s)	200, 319, 578
BclI	TGATCA	1 cut(s)	757
BfaI	CTAG	2 cut(s)	183, 441
BfrI	CTTAAG	1 cut(s)	376
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	5 cut(s)	83, 260, 407, 798, 801
BlsI	GCNGC	5 cut(s)	84, 261, 408, 799, 802
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	3 cut(s)	200, 319, 578
BmiI	GGNNCC	1 cut(s)	742
BmrFI	CCNGG	3 cut(s)	200, 319, 578
BmsI	GCATC	2 cut(s)	109, 822
BpiI	GAAGAC	2 cut(s)	133, 369
BpmI	CTGGAG	2 cut(s)	464, 768
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	433
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	318, 576, 827
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 583
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	2 cut(s)	293, 696
Bse21I	CCTNAGG	1 cut(s)	711
Bse3DI	GCAATG	1 cut(s)	716
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	3 cut(s)	200, 319, 578
BseDI	CCNNGG	3 cut(s)	318, 576, 827
BseGI	GGATG	2 cut(s)	769, 837
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	487, 583
BseMI	GCAATG	1 cut(s)	716
BseMII	CTCAG	3 cut(s)	114, 662, 725
BseNI	ACTGG	2 cut(s)	293, 696
BseRI	GAGGAG	2 cut(s)	679, 733
BseSI	GKGCMC	1 cut(s)	703
BseXI	GCAGC	3 cut(s)	69, 271, 418
BsiHKAI	GWGCWC	2 cut(s)	114, 568
BsiSI	CCGG	1 cut(s)	558
BslFI	GGGAC	2 cut(s)	559, 612
BslI	CCNNNNNNNGG	2 cut(s)	487, 583
BsmFI	GGGAC	2 cut(s)	559, 612
Bsp1286I	GDGCHC	3 cut(s)	114, 568, 703
Bsp143I	GATC	5 cut(s)	42, 135, 265, 271, 757
BspACI	CCGC	5 cut(s)	782, 798, 801, 824, 838
BspCNI	CTCAG	3 cut(s)	115, 661, 724
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	742
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	273, 279
BspTI	CTTAAG	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	716
BsrFI	RCCGGY	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	293, 696
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	3 cut(s)	318, 576, 827
BssMI	GATC	5 cut(s)	42, 135, 265, 271, 757
BssT1I	CCWWGG	1 cut(s)	827
Bst2UI	CCWGG	3 cut(s)	200, 319, 578
Bst4CI	ACNGT	2 cut(s)	573, 809
Bst6I	CTCTTC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	433
BstC8I	GCNNGC	3 cut(s)	158, 559, 585
BstDEI	CTNAG	3 cut(s)	123, 648, 711
BstF5I	GGATG	2 cut(s)	769, 837
BstHHI	GCGC	2 cut(s)	97, 583
BstKTI	GATC	5 cut(s)	45, 138, 268, 274, 760
BstMBI	GATC	5 cut(s)	42, 135, 265, 271, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 563, 823, 832
BstNI	CCWGG	3 cut(s)	200, 319, 578
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	198, 317, 576
BstSLI	GKGCMC	1 cut(s)	703
BstV1I	GCAGC	3 cut(s)	69, 271, 418
BstV2I	GAAGAC	2 cut(s)	133, 369
Bsu36I	CCTNAGG	1 cut(s)	711
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	769, 837
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	3 cut(s)	174, 568, 703
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	158, 559, 585
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	2 cut(s)	97, 583
Cfr10I	RCCGGY	1 cut(s)	557
Csp6I	GTAC	4 cut(s)	169, 460, 593, 617
CviAII	CATG	6 cut(s)	98, 187, 254, 302, 355, 727
CviQI	GTAC	4 cut(s)	169, 460, 593, 617
DdeI	CTNAG	3 cut(s)	123, 648, 711
DpnI	GATC	5 cut(s)	44, 137, 267, 273, 759
DpnII	GATC	5 cut(s)	42, 135, 265, 271, 757
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EciI	GGCGGA	3 cut(s)	771, 813, 827
Eco130I	CCWWGG	1 cut(s)	827
Eco57I	CTGAAG	2 cut(s)	377, 446
Eco81I	CCTNAGG	1 cut(s)	711
EcoRII	CCWGG	3 cut(s)	198, 317, 576
EcoT14I	CCWWGG	1 cut(s)	827
ErhI	CCWWGG	1 cut(s)	827
FaeI	CATG	6 cut(s)	101, 190, 257, 305, 358, 730
FaqI	GGGAC	2 cut(s)	559, 612
FatI	CATG	6 cut(s)	97, 186, 253, 301, 354, 726
FauNDI	CATATG	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	757
Fnu4HI	GCNGC	5 cut(s)	83, 260, 407, 798, 801
FokI	GGATG	2 cut(s)	776, 844
Fsp4HI	GCNGC	5 cut(s)	83, 260, 407, 798, 801
FspBI	CTAG	2 cut(s)	183, 441
GlaI	GCGC	2 cut(s)	96, 582
GluI	GCNGC	5 cut(s)	83, 260, 407, 798, 801
GsuI	CTGGAG	2 cut(s)	464, 768
HapII	CCGG	1 cut(s)	558
HhaI	GCGC	2 cut(s)	97, 583
Hin1II	CATG	6 cut(s)	101, 190, 257, 305, 358, 730
Hin6I	GCGC	2 cut(s)	95, 581
HinP1I	GCGC	2 cut(s)	95, 581
HinfI	GANTC	6 cut(s)	179, 195, 292, 416, 464, 686
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	396, 426, 737
Hpy188III	TCNNGA	8 cut(s)	88, 254, 269, 296, 441, 481, 747, 761
HpyAV	CCTTC	8 cut(s)	6, 66, 85, 481, 523, 535, 713, 830
HpyCH4III	ACNGT	2 cut(s)	573, 809
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	4 cut(s)	227, 305, 502, 670
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 563, 823, 832
HpyF3I	CTNAG	3 cut(s)	123, 648, 711
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	6 cut(s)	101, 190, 257, 305, 358, 730
HspAI	GCGC	2 cut(s)	95, 581
KroI	GCCGGC	1 cut(s)	557
KroNI	GCCGGC	1 cut(s)	559
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	5 cut(s)	42, 135, 265, 271, 757
LmnI	GCTCC	8 cut(s)	403, 483, 505, 571, 661, 746, 822, 840
Lsp1109I	GCAGC	3 cut(s)	69, 271, 418
LweI	GCATC	2 cut(s)	109, 822
MaeI	CTAG	2 cut(s)	183, 441
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	3 cut(s)	55, 651, 809
MalI	GATC	5 cut(s)	44, 137, 267, 273, 759
MboI	GATC	5 cut(s)	42, 135, 265, 271, 757
MboII	GAAGA	5 cut(s)	37, 133, 374, 496, 779
MhlI	GDGCHC	3 cut(s)	114, 568, 703
MluCI	AATT	3 cut(s)	397, 514, 730
MlyI	GAGTC	2 cut(s)	286, 680
MroNI	GCCGGC	1 cut(s)	557
MseI	TTAA	1 cut(s)	377
MslI	CAYNNNNRTG	1 cut(s)	846
MspCI	CTTAAG	1 cut(s)	376
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	3 cut(s)	200, 319, 578
MvaI	CCWGG	3 cut(s)	200, 319, 578
MwoI	GCNNNNNNNGC	4 cut(s)	128, 563, 823, 832
NaeI	GCCGGC	1 cut(s)	559
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	5 cut(s)	42, 135, 265, 271, 757
NgoMIV	GCCGGC	1 cut(s)	557
NlaIII	CATG	6 cut(s)	101, 190, 257, 305, 358, 730
NlaIV	GGNNCC	1 cut(s)	742
NmuCI	GTSAC	2 cut(s)	55, 651
NspI	RCATGY	1 cut(s)	305
PagI	TCATGA	1 cut(s)	253
PaqCI	CACCTGC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	559
PfeI	GAWTC	4 cut(s)	179, 195, 416, 464
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	5 cut(s)	84, 261, 408, 799, 802
PleI	GAGTC	2 cut(s)	286, 680
PpsI	GAGTC	2 cut(s)	286, 680
Ppu21I	YACGTR	1 cut(s)	433
Psp6I	CCWGG	3 cut(s)	198, 317, 576
PspGI	CCWGG	3 cut(s)	198, 317, 576
PspN4I	GGNNCC	1 cut(s)	742
RsaI	GTAC	4 cut(s)	170, 461, 594, 618
RsaNI	GTAC	4 cut(s)	169, 460, 593, 617
RseI	CAYNNNNRTG	1 cut(s)	846
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	5 cut(s)	83, 260, 407, 798, 801
Sau3AI	GATC	5 cut(s)	42, 135, 265, 271, 757
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	2 cut(s)	286, 680
ScrFI	CCNGG	3 cut(s)	200, 319, 578
SduI	GDGCHC	3 cut(s)	114, 568, 703
SfaNI	GCATC	2 cut(s)	109, 822
SmiMI	CAYNNNNRTG	1 cut(s)	846
SmlI	CTYRAG	2 cut(s)	86, 376
SmoI	CTYRAG	2 cut(s)	86, 376
Sse9I	AATT	3 cut(s)	397, 514, 730
SsiI	CCGC	5 cut(s)	782, 798, 801, 824, 838
SspMI	CTAG	2 cut(s)	183, 441
StyD4I	CCNGG	3 cut(s)	198, 317, 576
StyI	CCWWGG	1 cut(s)	827
TaaI	ACNGT	2 cut(s)	573, 809
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	1 cut(s)	684
TasI	AATT	3 cut(s)	397, 514, 730
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	2 cut(s)	800, 803
TfiI	GAWTC	4 cut(s)	179, 195, 416, 464
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TscAI	CASTG	3 cut(s)	181, 568, 703
TseFI	GTSAC	2 cut(s)	55, 651
TseI	GCWGC	3 cut(s)	82, 259, 406
Tsp45I	GTSAC	2 cut(s)	55, 651
TspDTI	ATGAA	5 cut(s)	210, 343, 398, 743, 780
TspRI	CASTG	3 cut(s)	181, 568, 703
Vha464I	CTTAAG	1 cut(s)	376
XapI	RAATTY	2 cut(s)	397, 730
XbaI	TCTAGA	1 cut(s)	440
XceI	RCATGY	1 cut(s)	305
XspI	CTAG	2 cut(s)	183, 441
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.