Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

4444525 .. 4450502

Gene Structure 5978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG061300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGGAGGGGAAGGGTTCAGTTGAAGCGGATAGAGAACAAGATCAATAGGCAGGTGACTTTCTCGAAGAGAAGGTCTGGGCTGCTCAAGAAGGCGCATGAGATTTCTGTGCTCTGCGATGCTGAGGTCGCTTTGATAGTCTTCTCCACCAAAGGCAAGCTCTTCGAGTACTCGACTGATTCTTGCATGGAAAGAATCCTGGAAAGGTATGAAAGATACTCATACGCAGAGCGGCAGCTTCTTGGAAATAATCACGATCACGACCACGATCAAGATCAATCAAATGGAAACTGGACTCTAGAACATGCAAAGCTCAAAGCCAGGGTGGAGGTTTTACAGAGAAATCAAAGTCATTTTATGGGGGAAGACTTACAATCCTTAAGTTTGAAAGAGCTTCAGAATTTGGAGCAGCAACTTGATTCTGCTCTGAAGCACATAAGGTCTAGAAAGAACCAACTTATGTACGAATCCATTTCGGTGCTCCAGAAGAAGGATAAGGTGTTGCAGGAGCAAAATAATTTGCTGACAAAAAAGGTATATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

181

Amino Acids

21.29

Weight (kDa)

9.39

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.9e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 179	5.4e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	232
AciI	CCGC	2 cut(s)	28, 232
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	2 cut(s)	380, 449
AfaI	GTAC	2 cut(s)	170, 464
AfiI	CCNNNNNNNGG	1 cut(s)	490
AflII	CTTAAG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	25, 388
AjnI	CCWGG	2 cut(s)	198, 320
AluBI	AGCT	4 cut(s)	160, 238, 313, 394
AluI	AGCT	4 cut(s)	160, 238, 313, 394
Alw21I	GWGCWC	2 cut(s)	114, 483
ApeKI	GCWGC	3 cut(s)	82, 235, 409
ApoI	RAATTY	1 cut(s)	400
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	67
BbsI	GAAGAC	2 cut(s)	133, 372
Bbv12I	GWGCWC	2 cut(s)	114, 483
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	69, 247, 421
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	2 cut(s)	200, 322
BfaI	CTAG	2 cut(s)	299, 444
BfrI	CTTAAG	1 cut(s)	379
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	4 cut(s)	83, 233, 236, 410
BlsI	GCNGC	4 cut(s)	84, 234, 237, 411
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	200, 322
BmrFI	CCNGG	2 cut(s)	200, 322
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	2 cut(s)	133, 372
BpmI	CTGGAG	1 cut(s)	467
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	200, 322
BseDI	CCNNGG	1 cut(s)	321
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	296
BseXI	GCAGC	3 cut(s)	69, 247, 421
BsiHKAI	GWGCWC	2 cut(s)	114, 483
BslI	CCNNNNNNNGG	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	114, 483
Bsp143I	GATC	4 cut(s)	42, 256, 268, 274
BspACI	CCGC	2 cut(s)	28, 232
BspCNI	CTCAG	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	4 cut(s)	42, 256, 268, 274
Bst2UI	CCWGG	2 cut(s)	200, 322
Bst6I	CTCTTC	2 cut(s)	62, 167
BstAFI	CTTAAG	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	4 cut(s)	45, 259, 271, 277
BstMBI	GATC	4 cut(s)	42, 256, 268, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	2 cut(s)	200, 322
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	198, 320
BstV1I	GCAGC	3 cut(s)	69, 247, 421
BstV2I	GAAGAC	2 cut(s)	133, 372
BtgZI	GCGATG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	169, 463
CviAII	CATG	4 cut(s)	98, 187, 305, 543
CviJI	RGCY	6 cut(s)	82, 160, 238, 313, 320, 394
CviKI_1	RGCY	6 cut(s)	82, 160, 238, 313, 320, 394
CviQI	GTAC	2 cut(s)	169, 463
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	4 cut(s)	44, 258, 270, 276
DpnII	GATC	4 cut(s)	42, 256, 268, 274
Eam1104I	CTCTTC	2 cut(s)	62, 167
EarI	CTCTTC	2 cut(s)	62, 167
Eco57I	CTGAAG	2 cut(s)	380, 449
EcoRII	CCWGG	2 cut(s)	198, 320
FaeI	CATG	4 cut(s)	101, 190, 308, 546
FatI	CATG	4 cut(s)	97, 186, 304, 542
Fnu4HI	GCNGC	4 cut(s)	83, 233, 236, 410
Fsp4HI	GCNGC	4 cut(s)	83, 233, 236, 410
FspBI	CTAG	2 cut(s)	299, 444
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	4 cut(s)	83, 233, 236, 410
GsuI	CTGGAG	1 cut(s)	467
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	4 cut(s)	101, 190, 308, 546
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	5 cut(s)	179, 195, 295, 419, 467
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	399, 429
Hpy188III	TCNNGA	8 cut(s)	64, 88, 254, 260, 272, 299, 444, 484
HpyAV	CCTTC	4 cut(s)	6, 66, 85, 484
HpyCH4V	TGCA	3 cut(s)	186, 308, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	101, 190, 308, 546
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	4 cut(s)	42, 256, 268, 274
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	3 cut(s)	406, 486, 508
LpnPI	CCDG	9 cut(s)	38, 63, 185, 212, 277, 307, 334, 491, 497
Lsp1109I	GCAGC	3 cut(s)	69, 247, 421
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	299, 444
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	44, 258, 270, 276
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	4 cut(s)	42, 256, 268, 274
MboII	GAAGA	5 cut(s)	79, 133, 154, 377, 499
MhlI	GDGCHC	2 cut(s)	114, 483
MluCI	AATT	2 cut(s)	400, 517
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	2 cut(s)	118, 322
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	1 cut(s)	476
MspCI	CTTAAG	1 cut(s)	379
MspR9I	CCNGG	2 cut(s)	200, 322
MvaI	CCWGG	2 cut(s)	200, 322
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	4 cut(s)	42, 256, 268, 274
NlaIII	CATG	4 cut(s)	101, 190, 308, 546
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	308
PaqCI	CACCTGC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	167
PfeI	GAWTC	4 cut(s)	179, 195, 419, 467
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	4 cut(s)	84, 234, 237, 411
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	198, 320
PspGI	CCWGG	2 cut(s)	198, 320
RsaI	GTAC	2 cut(s)	170, 464
RsaNI	GTAC	2 cut(s)	169, 463
RseI	CAYNNNNRTG	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	4 cut(s)	83, 233, 236, 410
Sau3AI	GATC	4 cut(s)	42, 256, 268, 274
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	200, 322
SduI	GDGCHC	2 cut(s)	114, 483
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	2 cut(s)	86, 379
SmoI	CTYRAG	2 cut(s)	86, 379
Sse9I	AATT	2 cut(s)	400, 517
SsiI	CCGC	2 cut(s)	28, 232
SspMI	CTAG	2 cut(s)	299, 444
StyD4I	CCNGG	2 cut(s)	198, 320
TaqI	TCGA	3 cut(s)	65, 165, 173
TasI	AATT	2 cut(s)	400, 517
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	4 cut(s)	179, 195, 419, 467
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	82, 235, 409
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	225
Vha464I	CTTAAG	1 cut(s)	379
XapI	RAATTY	1 cut(s)	400
XbaI	TCTAGA	2 cut(s)	298, 443
XceI	RCATGY	1 cut(s)	308
XspI	CTAG	2 cut(s)	299, 444
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.