Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

16629361 .. 16632684

Gene Structure 3324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G208500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGGAGGGGAAGGGTGCAGCTGAAGAGGATTGAAAACAAGATCAACAGGCAGGTGACCTTCTCAAAGAGAAGGTCTGGGTTGCTGAAGAAAGCCCAAGAGATTTCTGTGCTTTGTGATGCTGAGGTTGCTTTGATTGTCTTCTCCACCAAAGGCAAGCTCTTTGAGTACTCCACTGACTCCTGCATGGAAAGGATCCTGGAAAGGTACGAAAGATACTCATATTCAGAGAAGCAGCTTCTTGCAAATGATCATGAATCAACTGGAAGCTGGACTCTGGAACATGCGAAGCTCAAGGCTAGGGTGGAGGTTTTACAAAGAAATTGCAGTCATTTTATGGGGGAAGATCTCCAATCTTTAAGTCTGAAAGAGCTTCAGAATTTGGAGCAACAGCTTGATTCTGCACTGAAGCACATAAGGTCAAGAAAGAACCAGGTTATGTACGAATCGATTTCAGAGCTGCAAAAGAAGGATAAGGCATTGCAGGAGCAAAACAACTTGCTGGCAAAGAAGGTAAAGGAGAAGGAGAAAGCACTAGCTCCACAGGCAGAGTCATGGGAGCAGCAAGTGCAGAACCAGGGCTTGGACTGCTCCTCCACCCTTCTACCAGAGGCATTGCAGTCCTTGAATTTCGGCAGCGGTTCAAATTACCAGGGAATTAGAAATGATGGATCCGGTGGAGATCATGAGGATGAAAATGAGACCCCGACAGCAAATCGACCTAATACTCTCCTTCCCCCATGGATGCTCCGCCACCTTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

256

Amino Acids

29.22

Weight (kDa)

7.68

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	583
AciI	CCGC	2 cut(s)	639, 751
AclWI	GGATC	4 cut(s)	190, 203, 666, 679
AcsI	RAATTY	2 cut(s)	379, 628
AcuI	CTGAAG	4 cut(s)	44, 107, 359, 428
AfaI	GTAC	3 cut(s)	170, 209, 443
AfiI	CCNNNNNNNGG	1 cut(s)	583
AgsI	TTSAA	3 cut(s)	35, 628, 645
AjnI	CCWGG	4 cut(s)	198, 432, 576, 651
AjuI	GAANNNNNNNTTGG	2 cut(s)	566, 598
AluBI	AGCT	9 cut(s)	22, 160, 238, 270, 292, 373, 394, 460, 539
AluI	AGCT	9 cut(s)	22, 160, 238, 270, 292, 373, 394, 460, 539
Alw26I	GTCTC	1 cut(s)	695
AlwI	GGATC	4 cut(s)	190, 203, 666, 679
ApeKI	GCWGC	5 cut(s)	19, 235, 460, 562, 636
ApoI	RAATTY	2 cut(s)	379, 628
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AsuHPI	GGTGA	1 cut(s)	67
BamHI	GGATCC	2 cut(s)	195, 671
BbsI	GAAGAC	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	31, 247, 447, 574, 648
BccI	CCATC	1 cut(s)	662
BciT130I	CCWGG	4 cut(s)	200, 434, 578, 653
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	695
BfaI	CTAG	2 cut(s)	300, 536
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	5 cut(s)	20, 236, 461, 563, 637
BlsI	GCNGC	5 cut(s)	21, 237, 462, 564, 638
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	4 cut(s)	200, 434, 578, 653
BmiI	GGNNCC	2 cut(s)	197, 673
BmrFI	CCNGG	4 cut(s)	200, 434, 578, 653
BmsI	GCATC	2 cut(s)	109, 735
BpiI	GAAGAC	1 cut(s)	133
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	695
BsaJI	CCNNGG	3 cut(s)	577, 652, 740
BsaWI	WCCGGW	1 cut(s)	674
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	2 cut(s)	479, 614
BseBI	CCWGG	4 cut(s)	200, 434, 578, 653
BseCI	ATCGAT	1 cut(s)	449
BseDI	CCNNGG	3 cut(s)	577, 652, 740
BseGI	GGATG	2 cut(s)	697, 750
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMI	GCAATG	2 cut(s)	479, 614
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	583
BseXI	GCAGC	5 cut(s)	31, 247, 447, 574, 648
BsgI	GTGCAG	3 cut(s)	38, 387, 590
BshVI	ATCGAT	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	675
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmAI	GTCTC	1 cut(s)	695
Bso31I	GGTCTC	1 cut(s)	695
Bsp143I	GATC	6 cut(s)	42, 195, 250, 346, 671, 682
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	2 cut(s)	639, 751
BspCNI	CTCAG	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	449
BspHI	TCATGA	2 cut(s)	253, 685
BspLI	GGNNCC	2 cut(s)	197, 673
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	4 cut(s)	190, 203, 666, 679
BspTNI	GGTCTC	1 cut(s)	695
BsrDI	GCAATG	2 cut(s)	479, 614
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	3 cut(s)	577, 652, 740
BssMI	GATC	6 cut(s)	42, 195, 250, 346, 671, 682
BssT1I	CCWWGG	1 cut(s)	740
Bst2UI	CCWGG	4 cut(s)	200, 434, 578, 653
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	158, 504
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	740
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	697, 750
BstKTI	GATC	6 cut(s)	45, 198, 253, 349, 674, 685
BstMAI	GTCTC	1 cut(s)	695
BstMBI	GATC	6 cut(s)	42, 195, 250, 346, 671, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 545, 568, 588
BstNI	CCWGG	4 cut(s)	200, 434, 578, 653
BstNSI	RCATGY	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	4 cut(s)	198, 432, 576, 651
BstV1I	GCAGC	5 cut(s)	31, 247, 447, 574, 648
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	3 cut(s)	195, 346, 671
BstYI	RGATCY	3 cut(s)	195, 346, 671
Bsu15I	ATCGAT	1 cut(s)	449
BsuTUI	ATCGAT	1 cut(s)	449
BtgI	CCRYGG	1 cut(s)	740
BtsCI	GGATG	2 cut(s)	697, 750
BtsIMutI	CAGTG	2 cut(s)	174, 404
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	158, 504
CciI	TCATGA	2 cut(s)	253, 685
ClaI	ATCGAT	1 cut(s)	449
CsiI	ACCWGGT	1 cut(s)	432
Csp6I	GTAC	3 cut(s)	169, 208, 442
CviAII	CATG	6 cut(s)	187, 254, 284, 555, 686, 741
CviQI	GTAC	3 cut(s)	169, 208, 442
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	6 cut(s)	44, 197, 252, 348, 673, 684
DpnII	GATC	6 cut(s)	42, 195, 250, 346, 671, 682
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	740
Eco130I	CCWWGG	1 cut(s)	740
Eco31I	GGTCTC	1 cut(s)	695
Eco57I	CTGAAG	4 cut(s)	44, 107, 359, 428
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	4 cut(s)	198, 432, 576, 651
EcoT14I	CCWWGG	1 cut(s)	740
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	6 cut(s)	190, 257, 287, 558, 689, 744
FatI	CATG	6 cut(s)	186, 253, 283, 554, 685, 740
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	5 cut(s)	20, 236, 461, 563, 637
FokI	GGATG	2 cut(s)	704, 757
Fsp4HI	GCNGC	5 cut(s)	20, 236, 461, 563, 637
FspBI	CTAG	2 cut(s)	300, 536
GluI	GCNGC	5 cut(s)	20, 236, 461, 563, 637
HapII	CCGG	1 cut(s)	675
Hin1II	CATG	6 cut(s)	190, 257, 287, 558, 689, 744
HinfI	GANTC	6 cut(s)	179, 257, 274, 398, 446, 551
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	4 cut(s)	229, 366, 378, 457
Hpy188III	TCNNGA	4 cut(s)	254, 278, 423, 686
HpyAV	CCTTC	8 cut(s)	6, 66, 70, 463, 505, 517, 611, 743
HpyCH4V	TGCA	9 cut(s)	19, 186, 245, 327, 404, 463, 484, 571, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 545, 568, 588
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	6 cut(s)	190, 257, 287, 558, 689, 744
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	6 cut(s)	42, 195, 250, 346, 671, 682
LmnI	GCTCC	6 cut(s)	385, 487, 544, 559, 596, 753
Lsp1109I	GCAGC	5 cut(s)	31, 247, 447, 574, 648
LweI	GCATC	2 cut(s)	109, 735
MabI	ACCWGGT	1 cut(s)	432
MaeI	CTAG	2 cut(s)	300, 536
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	6 cut(s)	44, 197, 252, 348, 673, 684
MboI	GATC	6 cut(s)	42, 195, 250, 346, 671, 682
MboII	GAAGA	4 cut(s)	37, 100, 133, 356
MflI	RGATCY	3 cut(s)	195, 346, 671
MluCI	AATT	5 cut(s)	322, 379, 628, 646, 657
MlyI	GAGTC	3 cut(s)	173, 268, 560
MnlI	CCTC	6 cut(s)	21, 118, 301, 604, 604, 682
MseI	TTAA	2 cut(s)	359, 759
MslI	CAYNNNNRTG	2 cut(s)	690, 759
MspA1I	CMGCKG	2 cut(s)	22, 639
MspI	CCGG	1 cut(s)	675
MspR9I	CCNGG	4 cut(s)	200, 434, 578, 653
MvaI	CCWGG	4 cut(s)	200, 434, 578, 653
MwoI	GCNNNNNNNGC	4 cut(s)	128, 545, 568, 588
NcoI	CCATGG	1 cut(s)	740
NdeII	GATC	6 cut(s)	42, 195, 250, 346, 671, 682
NlaIII	CATG	6 cut(s)	190, 257, 287, 558, 689, 744
NlaIV	GGNNCC	2 cut(s)	197, 673
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	287
PagI	TCATGA	2 cut(s)	253, 685
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	257, 398, 446
PflMI	CCANNNNNTGG	1 cut(s)	583
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	5 cut(s)	21, 237, 462, 564, 638
PleI	GAGTC	3 cut(s)	173, 268, 559
PpsI	GAGTC	3 cut(s)	173, 268, 559
Psp6I	CCWGG	4 cut(s)	198, 432, 576, 651
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	4 cut(s)	198, 432, 576, 651
PspN4I	GGNNCC	2 cut(s)	197, 673
PsuI	RGATCY	3 cut(s)	195, 346, 671
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	3 cut(s)	170, 209, 443
RsaNI	GTAC	3 cut(s)	169, 208, 442
RseI	CAYNNNNRTG	2 cut(s)	690, 759
SaqAI	TTAA	2 cut(s)	359, 759
SatI	GCNGC	5 cut(s)	20, 236, 461, 563, 637
Sau3AI	GATC	6 cut(s)	42, 195, 250, 346, 671, 682
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	3 cut(s)	173, 268, 560
ScrFI	CCNGG	4 cut(s)	200, 434, 578, 653
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	2 cut(s)	109, 735
SmiMI	CAYNNNNRTG	2 cut(s)	690, 759
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	5 cut(s)	322, 379, 628, 646, 657
SsiI	CCGC	2 cut(s)	639, 751
SspMI	CTAG	2 cut(s)	300, 536
StyD4I	CCNGG	4 cut(s)	198, 432, 576, 651
StyI	CCWWGG	1 cut(s)	740
TaqI	TCGA	2 cut(s)	449, 718
TasI	AATT	5 cut(s)	322, 379, 628, 646, 657
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	3 cut(s)	257, 398, 446
Tru1I	TTAA	2 cut(s)	359, 759
Tru9I	TTAA	2 cut(s)	359, 759
TscAI	CASTG	2 cut(s)	181, 411
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	5 cut(s)	19, 235, 460, 562, 636
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	270, 708
TspRI	CASTG	2 cut(s)	181, 411
Van91I	CCANNNNNTGG	1 cut(s)	583
XapI	RAATTY	2 cut(s)	379, 628
XceI	RCATGY	1 cut(s)	287
XspI	CTAG	2 cut(s)	300, 536
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.