Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

4437199 .. 4444220

Gene Structure 7022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGGAGGGGAAGGGTTCAGTTGAAGCGGATAGAGAACAAGATCAATAGGCAGGTGACTTTCTCGAAGAGAAGGTCTGGGCTGCTCAAGAAGGCGCATGAGATTTCTGTGCTCTGCGATGCTGAGGTCGCTTTGATAGTCTTCTCTACCAAAGGCAAGCTCTTCGAGTACTCGACTGATTCTTGCATGGAAAGAATCCTGGAAAGGTATGAAAGATACTCATACGCAGAGCGGCAGCTTCTTGGAAATAATCACGATAACGACCACGATCAAGATCAATCAAATGGAAACTGGACTCTAGAACATGCAAAGCTCAAAGCTAGGGTGGAGGTTTTACAGAGAAATCAAAGTCACTTTATGGGGGAAGACCTACAATCCTTAAGTTTGAAAGAGCTTCAGAATTTGGAGCAGCAACTTGATTCTGCTCTGAAGCACATAAGGTCTAGAAAGAACCAACTTATGTACGAATCCATTTCGGTGCTCCAGAAGAAGGATAAGGTGTTGCAGGAGCAAAATAATTTGCTGACAAAAAAGGTCAAGGAGAAGGAGAAGGAGAGAGAAGTAGCCGGCAGTGCCCCACAAGCACAGGCACAGGCACAATGGGAGCAGATGCAGAGGCACAGCTTGGACTCCTCCTCCAGCAGTGCCTTTCTACCTCAGGCTTTGCAGTCCTTGAATTTCAGAGGCTCATCTGGAGACTATGATCATGATGAAGAAACCCCACCTCCACCTCCGCCTCAACATCTAGCTGCCGCTGCTGCCAACAGTAATACGCTCCTGCCGCCTTGGATGCTCCGCCACCTTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

270

Amino Acids

31.03

Weight (kDa)

8.42

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	9.7e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 179	9.2e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	232
AciI	CCGC	6 cut(s)	28, 232, 734, 753, 782, 796
AcsI	RAATTY	2 cut(s)	400, 676
AcuI	CTGAAG	2 cut(s)	380, 449
AfaI	GTAC	2 cut(s)	170, 464
AfiI	CCNNNNNNNGG	1 cut(s)	490
AflII	CTTAAG	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	25, 388, 676
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	7 cut(s)	160, 238, 313, 320, 394, 624, 749
AluI	AGCT	7 cut(s)	160, 238, 313, 320, 394, 624, 749
Alw21I	GWGCWC	2 cut(s)	114, 483
Alw26I	GTCTC	1 cut(s)	690
ApeKI	GCWGC	6 cut(s)	82, 235, 409, 749, 755, 758
ApoI	RAATTY	2 cut(s)	400, 676
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	657
BaeGI	GKGCMC	1 cut(s)	577
BbsI	GAAGAC	2 cut(s)	133, 372
Bbv12I	GWGCWC	2 cut(s)	114, 483
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	6 cut(s)	69, 247, 421, 736, 742, 745
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	703
BcoDI	GTCTC	1 cut(s)	690
BfaI	CTAG	4 cut(s)	299, 321, 444, 746
BfrI	CTTAAG	1 cut(s)	379
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	9 cut(s)	83, 233, 236, 410, 750, 753, 756, 759, 782
BlsI	GCNGC	9 cut(s)	84, 234, 237, 411, 751, 754, 757, 760, 783
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	3 cut(s)	109, 600, 780
BpiI	GAAGAC	2 cut(s)	133, 372
BpmI	CTGGAG	3 cut(s)	467, 622, 714
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	785
BsaXI	ACNNNNNCTCC	4 cut(s)	620, 650, 709, 739
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse118I	RCCGGY	1 cut(s)	566
Bse1I	ACTGG	1 cut(s)	296
Bse21I	CCTNAGG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	785
BseGI	GGATG	1 cut(s)	795
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMII	CTCAG	2 cut(s)	114, 671
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	622, 625
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	6 cut(s)	69, 247, 421, 736, 742, 745
BsiHKAI	GWGCWC	2 cut(s)	114, 483
BsiSI	CCGG	1 cut(s)	567
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	690
Bsp1286I	GDGCHC	3 cut(s)	114, 483, 577
Bsp143I	GATC	4 cut(s)	42, 268, 274, 703
BspACI	CCGC	6 cut(s)	28, 232, 734, 753, 782, 796
BspCNI	CTCAG	2 cut(s)	115, 670
BspHI	TCATGA	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	232
BsrFI	RCCGGY	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	1 cut(s)	785
BssMI	GATC	4 cut(s)	42, 268, 274, 703
BssT1I	CCWWGG	1 cut(s)	785
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	767
Bst6I	CTCTTC	2 cut(s)	62, 167
BstAFI	CTTAAG	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	158, 568
BstDEI	CTNAG	2 cut(s)	123, 657
BstF5I	GGATG	1 cut(s)	795
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	4 cut(s)	45, 271, 277, 706
BstMAI	GTCTC	1 cut(s)	690
BstMBI	GATC	4 cut(s)	42, 268, 274, 703
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 572, 581, 755, 758, 781, 790
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	577
BstV1I	GCAGC	6 cut(s)	69, 247, 421, 736, 742, 745
BstV2I	GAAGAC	2 cut(s)	133, 372
Bsu36I	CCTNAGG	1 cut(s)	657
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	795
BtsI	GCAGTG	2 cut(s)	577, 649
BtsIMutI	CAGTG	2 cut(s)	577, 649
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	158, 568
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	566
Csp6I	GTAC	2 cut(s)	169, 463
CviAII	CATG	4 cut(s)	98, 187, 305, 707
CviQI	GTAC	2 cut(s)	169, 463
DdeI	CTNAG	2 cut(s)	123, 657
DpnI	GATC	4 cut(s)	44, 270, 276, 705
DpnII	GATC	4 cut(s)	42, 268, 274, 703
Eam1104I	CTCTTC	2 cut(s)	62, 167
EarI	CTCTTC	2 cut(s)	62, 167
EciI	GGCGGA	2 cut(s)	723, 785
Eco130I	CCWWGG	1 cut(s)	785
Eco57I	CTGAAG	2 cut(s)	380, 449
Eco81I	CCTNAGG	1 cut(s)	657
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	785
ErhI	CCWWGG	1 cut(s)	785
FaeI	CATG	4 cut(s)	101, 190, 308, 710
FatI	CATG	4 cut(s)	97, 186, 304, 706
FbaI	TGATCA	1 cut(s)	703
Fnu4HI	GCNGC	9 cut(s)	83, 233, 236, 410, 750, 753, 756, 759, 782
FokI	GGATG	1 cut(s)	802
Fsp4HI	GCNGC	9 cut(s)	83, 233, 236, 410, 750, 753, 756, 759, 782
FspBI	CTAG	4 cut(s)	299, 321, 444, 746
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	9 cut(s)	83, 233, 236, 410, 750, 753, 756, 759, 782
GsuI	CTGGAG	3 cut(s)	467, 622, 714
HapII	CCGG	1 cut(s)	567
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	4 cut(s)	101, 190, 308, 710
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	6 cut(s)	179, 195, 295, 419, 467, 629
HpaII	CCGG	1 cut(s)	567
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	399, 429, 683
Hpy188III	TCNNGA	9 cut(s)	64, 88, 254, 272, 299, 444, 484, 693, 707
HpyAV	CCTTC	6 cut(s)	6, 66, 85, 484, 538, 544
HpyCH4III	ACNGT	1 cut(s)	767
HpyCH4V	TGCA	5 cut(s)	186, 308, 505, 613, 667
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 572, 581, 755, 758, 781, 790
HpyF3I	CTNAG	2 cut(s)	123, 657
Hsp92II	CATG	4 cut(s)	101, 190, 308, 710
HspAI	GCGC	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	566
KroNI	GCCGGC	1 cut(s)	568
Ksp22I	TGATCA	1 cut(s)	703
Kzo9I	GATC	4 cut(s)	42, 268, 274, 703
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	6 cut(s)	406, 486, 508, 604, 780, 798
Lsp1109I	GCAGC	6 cut(s)	69, 247, 421, 736, 742, 745
LweI	GCATC	3 cut(s)	109, 600, 780
MaeI	CTAG	4 cut(s)	299, 321, 444, 746
MaeIII	GTNAC	2 cut(s)	55, 350
MalI	GATC	4 cut(s)	44, 270, 276, 705
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	4 cut(s)	42, 268, 274, 703
MboII	GAAGA	6 cut(s)	79, 133, 154, 377, 499, 725
MhlI	GDGCHC	3 cut(s)	114, 483, 577
MluCI	AATT	3 cut(s)	400, 517, 676
MlyI	GAGTC	2 cut(s)	289, 623
MroNI	GCCGGC	1 cut(s)	566
MseI	TTAA	2 cut(s)	380, 804
MslI	CAYNNNNRTG	2 cut(s)	476, 804
MspA1I	CMGCKG	1 cut(s)	755
MspCI	CTTAAG	1 cut(s)	379
MspI	CCGG	1 cut(s)	567
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	7 cut(s)	128, 572, 581, 755, 758, 781, 790
NaeI	GCCGGC	1 cut(s)	568
NdeII	GATC	4 cut(s)	42, 268, 274, 703
NgoMIV	GCCGGC	1 cut(s)	566
NlaIII	CATG	4 cut(s)	101, 190, 308, 710
NmuCI	GTSAC	2 cut(s)	55, 350
NspI	RCATGY	1 cut(s)	308
PagI	TCATGA	1 cut(s)	706
PaqCI	CACCTGC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	167
PdiI	GCCGGC	1 cut(s)	568
PfeI	GAWTC	4 cut(s)	179, 195, 419, 467
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	9 cut(s)	84, 234, 237, 411, 751, 754, 757, 760, 783
PleI	GAGTC	2 cut(s)	289, 623
PpsI	GAGTC	2 cut(s)	289, 623
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
RsaI	GTAC	2 cut(s)	170, 464
RsaNI	GTAC	2 cut(s)	169, 463
RseI	CAYNNNNRTG	2 cut(s)	476, 804
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	380, 804
SatI	GCNGC	9 cut(s)	83, 233, 236, 410, 750, 753, 756, 759, 782
Sau3AI	GATC	4 cut(s)	42, 268, 274, 703
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	2 cut(s)	289, 623
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	3 cut(s)	114, 483, 577
SfaNI	GCATC	3 cut(s)	109, 600, 780
SmiMI	CAYNNNNRTG	2 cut(s)	476, 804
SmlI	CTYRAG	2 cut(s)	86, 379
SmoI	CTYRAG	2 cut(s)	86, 379
Sse9I	AATT	3 cut(s)	400, 517, 676
SsiI	CCGC	6 cut(s)	28, 232, 734, 753, 782, 796
SspMI	CTAG	4 cut(s)	299, 321, 444, 746
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	785
TaaI	ACNGT	1 cut(s)	767
TaqI	TCGA	3 cut(s)	65, 165, 173
TasI	AATT	3 cut(s)	400, 517, 676
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	3 cut(s)	235, 755, 784
TfiI	GAWTC	4 cut(s)	179, 195, 419, 467
Tru1I	TTAA	2 cut(s)	380, 804
Tru9I	TTAA	2 cut(s)	380, 804
TscAI	CASTG	2 cut(s)	577, 649
TseFI	GTSAC	2 cut(s)	55, 350
TseI	GCWGC	6 cut(s)	82, 235, 409, 749, 755, 758
Tsp45I	GTSAC	2 cut(s)	55, 350
TspDTI	ATGAA	2 cut(s)	225, 726
TspRI	CASTG	2 cut(s)	577, 649
Vha464I	CTTAAG	1 cut(s)	379
XapI	RAATTY	2 cut(s)	400, 676
XbaI	TCTAGA	2 cut(s)	298, 443
XceI	RCATGY	1 cut(s)	308
XspI	CTAG	4 cut(s)	299, 321, 444, 746
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.