Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8416243.1

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 792

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8416243.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

atgccaagtgaaaggacattgggaatcccgactctggaacatgcaaagctcaaagctagggtggaggttttgcagagaaatcaatgtcaatttatggggaaagacatccaatccttaagtatgaaagatcttcagaatttggagcagcaacttgattctgctgtgaagcacgtgaggtctagaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

62

Amino Acids

7.16

Weight (kDa)

9.74

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	116
AcvI	CACGTG	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflII	CTTAAG	1 cut(s)	115
AluBI	AGCT	2 cut(s)	49, 56
AluI	AGCT	2 cut(s)	49, 56
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	157
BfaI	CTAG	2 cut(s)	57, 180
BfrI	CTTAAG	1 cut(s)	115
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
BsaAI	YACGTR	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	127
BspTI	CTTAAG	1 cut(s)	115
BssMI	GATC	1 cut(s)	127
BstAFI	CTTAAG	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	105
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	2 cut(s)	49, 56
CviKI_1	RGCY	2 cut(s)	49, 56
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	116
Eco72I	CACGTG	1 cut(s)	172
FaeI	CATG	1 cut(s)	44
FaiI	YATR	3 cut(s)	42, 95, 122
FatI	CATG	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	2 cut(s)	57, 180
GluI	GCNGC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	44
HinfI	GANTC	3 cut(s)	24, 31, 155
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	3 cut(s)	28, 35, 180
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	44, 73
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	1 cut(s)	20
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	2 cut(s)	57, 180
MaeII	ACGT	1 cut(s)	171
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	2 cut(s)	89, 136
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	2 cut(s)	58, 168
MseI	TTAA	1 cut(s)	116
MspCI	CTTAAG	1 cut(s)	115
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	44
NspI	RCATGY	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	24, 155
PkrI	GCNGC	1 cut(s)	147
PleI	GAGTC	1 cut(s)	25
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	25
SetI	ASST	5 cut(s)	51, 58, 69, 174, 179
SgeI	CNNG	7 cut(s)	18, 40, 47, 53, 69, 164, 182
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	2 cut(s)	89, 136
SspMI	CTAG	2 cut(s)	57, 180
TaiI	ACGT	1 cut(s)	174
TasI	AATT	2 cut(s)	89, 136
TfiI	GAWTC	2 cut(s)	24, 155
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TseI	GCWGC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	137
Vha464I	CTTAAG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	136
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	1 cut(s)	44
XspI	CTAG	2 cut(s)	57, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.