Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

689105 .. 691836

Gene Structure 2732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG009700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGCTGGCTTTTCTATAGAGCATGGTGGTAGTAGTGACAATCATTTTATGGGGAAAGACCTCCAATCCTTAAGTATGAAAGATCTTCAGAATTTGAAGCAGCAACTTGATTCTGCTCTGAAGCACATGAGGTCTAGAAAGAATCAACTTATGTACCCATTCAGTGCTTCAGAAGAAGGACGTCACTTTTTCTTTTTGATTTTGGACTTTGCATGTAAACTTTACACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

76

Amino Acids

8.77

Weight (kDa)

7.94

Isoelectric Point (pI)

63.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	12 - 52	1e-13	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	3 cut(s)	71, 140, 153
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	1 cut(s)	155
AflII	CTTAAG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	91
BaeI	ACNNNNGTAYC	2 cut(s)	137, 170
BbvI	GCAGC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	70
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BsaAI	YACGTR	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	82
BspTI	CTTAAG	1 cut(s)	70
BssMI	GATC	1 cut(s)	82
BssNI	GRCGYC	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	181
BstAFI	CTTAAG	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	3 cut(s)	23, 127, 213
CviJI	RGCY	2 cut(s)	5, 9
CviKI_1	RGCY	2 cut(s)	5, 9
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
Eco57I	CTGAAG	3 cut(s)	71, 140, 153
FaeI	CATG	3 cut(s)	26, 130, 216
FaiI	YATR	7 cut(s)	17, 24, 50, 77, 128, 152, 214
FatI	CATG	3 cut(s)	22, 126, 212
Fnu4HI	GCNGC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	3 cut(s)	26, 130, 216
HinfI	GANTC	2 cut(s)	110, 142
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	90, 120, 172
Hpy188III	TCNNGA	1 cut(s)	135
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	170
HpyCH4IV	ACGT	2 cut(s)	181, 227
HpyCH4V	TGCA	1 cut(s)	212
HpySE526I	ACGT	2 cut(s)	181, 227
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	3 cut(s)	26, 130, 216
Kzo9I	GATC	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	2 cut(s)	181, 227
MaeIII	GTNAC	2 cut(s)	35, 182
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	2 cut(s)	77, 185
MflI	RGATCY	1 cut(s)	82
MluCI	AATT	1 cut(s)	91
MnlI	CCTC	2 cut(s)	71, 123
MseI	TTAA	1 cut(s)	71
MspCI	CTTAAG	1 cut(s)	70
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	3 cut(s)	26, 130, 216
NmuCI	GTSAC	2 cut(s)	35, 182
NspI	RCATGY	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	110, 142
PkrI	GCNGC	1 cut(s)	102
Ppu21I	YACGTR	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	82
SetI	ASST	4 cut(s)	63, 134, 184, 230
SfcI	CTRYAG	1 cut(s)	15
SgeI	CNNG	6 cut(s)	18, 35, 119, 139, 147, 225
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	1 cut(s)	91
SspMI	CTAG	1 cut(s)	135
TaiI	ACGT	2 cut(s)	184, 230
TasI	AATT	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	110, 142
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	2 cut(s)	35, 182
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	2 cut(s)	35, 182
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	169
Vha464I	CTTAAG	1 cut(s)	70
XapI	RAATTY	1 cut(s)	91
XbaI	TCTAGA	1 cut(s)	134
XceI	RCATGY	1 cut(s)	216
XspI	CTAG	1 cut(s)	135
ZraI	GACGTC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.