Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

959017 .. 959818

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG012600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCCAAGTACTTGGGAATCCTGACTCTGGAACATGCAAAGCTCAAAGCTAGGGTGGAGCTTTTACAGAGAAATCAATGTCATTTTATGGGGAAAGACCTCCAATCCTTAAGTATGAAAGATCTTCAGAATTTGGAGCAGCAACTTGATTCTGCTCTGAAGCACATGAGGTCTAGAAAGAATCAACTTATGTACGAATCCATTCAGTGCTTCAGAAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

74

Amino Acids

8.86

Weight (kDa)

9.93

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	10 - 73	1.8e-21	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	3 cut(s)	110, 179, 196
AfaI	GTAC	2 cut(s)	11, 194
AfiI	CCNNNNNNNGG	1 cut(s)	28
AflII	CTTAAG	1 cut(s)	109
AluBI	AGCT	3 cut(s)	43, 50, 61
AluI	AGCT	3 cut(s)	43, 50, 61
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	151
BfaI	CTAG	2 cut(s)	51, 174
BfrI	CTTAAG	1 cut(s)	109
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
BmcAI	AGTACT	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	151
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	28
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	5
BspTI	CTTAAG	1 cut(s)	109
BssMI	GATC	1 cut(s)	121
BstAFI	CTTAAG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	10, 193
CviAII	CATG	2 cut(s)	35, 166
CviJI	RGCY	4 cut(s)	5, 43, 50, 61
CviKI_1	RGCY	4 cut(s)	5, 43, 50, 61
CviQI	GTAC	2 cut(s)	10, 193
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	3
Eco57I	CTGAAG	3 cut(s)	110, 179, 196
FaeI	CATG	2 cut(s)	38, 169
FaiI	YATR	5 cut(s)	36, 89, 116, 167, 191
FatI	CATG	2 cut(s)	34, 165
Fnu4HI	GCNGC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	2 cut(s)	51, 174
GluI	GCNGC	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	38, 169
HinfI	GANTC	5 cut(s)	18, 25, 149, 181, 197
Hpy188I	TCNGA	3 cut(s)	129, 159, 215
Hpy188III	TCNNGA	3 cut(s)	22, 29, 174
HpyAV	CCTTC	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	38, 169
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	2 cut(s)	58, 136
LpnPI	CCDG	2 cut(s)	14, 35
Lsp1109I	GCAGC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	51, 174
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	130
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	2 cut(s)	110, 162
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	109
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	38, 169
NspI	RCATGY	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	4 cut(s)	18, 149, 181, 197
PkrI	GCNGC	1 cut(s)	141
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	2 cut(s)	11, 194
RsaNI	GTAC	2 cut(s)	10, 193
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	121
ScaI	AGTACT	1 cut(s)	11
SchI	GAGTC	1 cut(s)	19
SetI	ASST	6 cut(s)	45, 52, 63, 102, 173, 224
SgeI	CNNG	9 cut(s)	19, 25, 34, 41, 47, 63, 158, 178, 186
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	1 cut(s)	130
SspMI	CTAG	2 cut(s)	51, 174
TasI	AATT	1 cut(s)	130
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	4 cut(s)	18, 149, 181, 197
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	212
TseI	GCWGC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	212
Vha464I	CTTAAG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	130
XbaI	TCTAGA	1 cut(s)	173
XceI	RCATGY	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	2 cut(s)	51, 174
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.