Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

4105552 .. 4110763

Gene Structure 5212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G004890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGGAGGGGAAGGGTTCAGTTGAAGCGGATAGAGAACAAGATCAATAGGCAGGTGACTTTCTCGAAGAGACGGTCTGGGCTGCTCAAGAAGGCGCATGAGATTTCTGTGCTCTGCGATGCTGAGGTCGCTTTGATAGTCTTCTCTACCAAAGGCAAGCTCTTCGAGTACTCGACTGATTCTTGCATGGAAAGAATCCTGGAAAGGTATGAAAGATACTCATACGCAGAGCGGCAGCTTCTTGGAAATAATCACGATCACGACCACGATCAAGATCAATCAAATGGAAACTGGACTCTAGAACATGCAAAGCTCAAAGCTAGGGTGGAGGTTTTACAGAGAAATCAAAGTCACTTTATGGGGGAAGACCTACAATCCTTAAGTTTGAAAGAGCTTCAGAATTTGGAGCAGCAACTTGATTCTGCTCTGAAGCACATAAGGTCTAGAAAGAACCAACTTATGTACGAATCCATTTCGGTGCTCCAGAAGAAGGATAAGGTGTTGCAGGAGCAAAATAATTTGCTGACAAAAAAGGAGAAGGAGAAGGAGAGAGCAGTAGCCGGCAGTGCCCCACAAGCACAGGAACAGGCACAATGGGAGCAGCTGCAGAGGCACAGCTTGGACTCCTCCTCCAGCAGTGCCTTTCTACCTCAGGCTTTGCAGTCCTTGAATTTCAGAGGCTCATCTGGAGACTATGATCATGATGAAGAAACCCCACCTCCACCTCCGCCTCAACATCTAGCTGCCGCTGCTGCCAACAGTAATACGCTCCTGCCGCCTTGGATGCTCCGCCACCTTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

268

Amino Acids

30.8

Weight (kDa)

7.83

Isoelectric Point (pI)

61.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	9.5e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 178	4.5e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	232
AciI	CCGC	6 cut(s)	28, 232, 728, 747, 776, 790
AcsI	RAATTY	2 cut(s)	400, 670
AcuI	CTGAAG	2 cut(s)	380, 449
AfaI	GTAC	2 cut(s)	170, 464
AfiI	CCNNNNNNNGG	1 cut(s)	490
AflII	CTTAAG	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	25, 388, 670
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	8 cut(s)	160, 238, 313, 320, 394, 604, 618, 743
AluI	AGCT	8 cut(s)	160, 238, 313, 320, 394, 604, 618, 743
Alw21I	GWGCWC	2 cut(s)	114, 483
Alw26I	GTCTC	2 cut(s)	64, 684
ApeKI	GCWGC	8 cut(s)	82, 235, 409, 601, 604, 743, 749, 752
ApoI	RAATTY	2 cut(s)	400, 670
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	651
BaeGI	GKGCMC	1 cut(s)	571
BbsI	GAAGAC	2 cut(s)	133, 372
Bbv12I	GWGCWC	2 cut(s)	114, 483
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	8 cut(s)	69, 247, 421, 591, 613, 730, 736, 739
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	697
BcoDI	GTCTC	2 cut(s)	64, 684
BfaI	CTAG	4 cut(s)	299, 321, 444, 740
BfmI	CTRYAG	1 cut(s)	605
BfrI	CTTAAG	1 cut(s)	379
BfuAI	ACCTGC	1 cut(s)	43
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	109, 774
BpiI	GAAGAC	2 cut(s)	133, 372
BpmI	CTGGAG	3 cut(s)	467, 616, 708
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	779
BsaXI	ACNNNNNCTCC	4 cut(s)	614, 644, 703, 733
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	1 cut(s)	296
Bse21I	CCTNAGG	1 cut(s)	651
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	779
BseGI	GGATG	1 cut(s)	789
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMII	CTCAG	2 cut(s)	114, 665
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	616, 619
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	8 cut(s)	69, 247, 421, 591, 613, 730, 736, 739
BsiHKAI	GWGCWC	2 cut(s)	114, 483
BsiSI	CCGG	1 cut(s)	561
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	2 cut(s)	64, 684
BsmBI	CGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	3 cut(s)	114, 483, 571
Bsp143I	GATC	5 cut(s)	42, 256, 268, 274, 697
BspACI	CCGC	6 cut(s)	28, 232, 728, 747, 776, 790
BspCNI	CTCAG	2 cut(s)	115, 664
BspHI	TCATGA	1 cut(s)	700
BspMAI	CTGCAG	1 cut(s)	609
BspMI	ACCTGC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	232
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	1 cut(s)	779
BssMI	GATC	5 cut(s)	42, 256, 268, 274, 697
BssT1I	CCWWGG	1 cut(s)	779
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	75, 761
Bst6I	CTCTTC	2 cut(s)	62, 167
BstAFI	CTTAAG	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	158, 562
BstDEI	CTNAG	2 cut(s)	123, 651
BstF5I	GGATG	1 cut(s)	789
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	5 cut(s)	45, 259, 271, 277, 700
BstMAI	GTCTC	2 cut(s)	64, 684
BstMBI	GATC	5 cut(s)	42, 256, 268, 274, 697
BstMWI	GCNNNNNNNGC	8 cut(s)	128, 566, 575, 610, 749, 752, 775, 784
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	605
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	8 cut(s)	69, 247, 421, 591, 613, 730, 736, 739
BstV2I	GAAGAC	2 cut(s)	133, 372
Bsu36I	CCTNAGG	1 cut(s)	651
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	789
BtsI	GCAGTG	2 cut(s)	571, 643
BtsIMutI	CAGTG	2 cut(s)	571, 643
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	158, 562
CciI	TCATGA	1 cut(s)	700
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	169, 463
CviAII	CATG	4 cut(s)	98, 187, 305, 701
CviQI	GTAC	2 cut(s)	169, 463
DdeI	CTNAG	2 cut(s)	123, 651
DpnI	GATC	5 cut(s)	44, 258, 270, 276, 699
DpnII	GATC	5 cut(s)	42, 256, 268, 274, 697
Eam1104I	CTCTTC	2 cut(s)	62, 167
EarI	CTCTTC	2 cut(s)	62, 167
EciI	GGCGGA	2 cut(s)	717, 779
Eco130I	CCWWGG	1 cut(s)	779
Eco57I	CTGAAG	2 cut(s)	380, 449
Eco81I	CCTNAGG	1 cut(s)	651
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	779
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	4 cut(s)	101, 190, 308, 704
FatI	CATG	4 cut(s)	97, 186, 304, 700
FbaI	TGATCA	1 cut(s)	697
FokI	GGATG	1 cut(s)	796
FspBI	CTAG	4 cut(s)	299, 321, 444, 740
GlaI	GCGC	1 cut(s)	96
GsuI	CTGGAG	3 cut(s)	467, 616, 708
HapII	CCGG	1 cut(s)	561
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	4 cut(s)	101, 190, 308, 704
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	6 cut(s)	179, 195, 295, 419, 467, 623
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	399, 429, 677
HpyAV	CCTTC	5 cut(s)	6, 85, 484, 532, 538
HpyCH4III	ACNGT	2 cut(s)	75, 761
HpyCH4V	TGCA	5 cut(s)	186, 308, 505, 607, 661
HpyF10VI	GCNNNNNNNGC	8 cut(s)	128, 566, 575, 610, 749, 752, 775, 784
HpyF3I	CTNAG	2 cut(s)	123, 651
Hsp92II	CATG	4 cut(s)	101, 190, 308, 704
HspAI	GCGC	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	560
KroNI	GCCGGC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	5 cut(s)	42, 256, 268, 274, 697
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	6 cut(s)	406, 486, 508, 598, 774, 792
Lsp1109I	GCAGC	8 cut(s)	69, 247, 421, 591, 613, 730, 736, 739
LweI	GCATC	2 cut(s)	109, 774
MaeI	CTAG	4 cut(s)	299, 321, 444, 740
MaeIII	GTNAC	2 cut(s)	55, 350
MalI	GATC	5 cut(s)	44, 258, 270, 276, 699
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	5 cut(s)	42, 256, 268, 274, 697
MboII	GAAGA	6 cut(s)	79, 133, 154, 377, 499, 719
MhlI	GDGCHC	3 cut(s)	114, 483, 571
MluCI	AATT	3 cut(s)	400, 517, 670
MlyI	GAGTC	2 cut(s)	289, 617
MroNI	GCCGGC	1 cut(s)	560
MseI	TTAA	2 cut(s)	380, 798
MslI	CAYNNNNRTG	2 cut(s)	476, 798
MspA1I	CMGCKG	2 cut(s)	604, 749
MspCI	CTTAAG	1 cut(s)	379
MspI	CCGG	1 cut(s)	561
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	8 cut(s)	128, 566, 575, 610, 749, 752, 775, 784
NaeI	GCCGGC	1 cut(s)	562
NdeII	GATC	5 cut(s)	42, 256, 268, 274, 697
NgoMIV	GCCGGC	1 cut(s)	560
NlaIII	CATG	4 cut(s)	101, 190, 308, 704
NmuCI	GTSAC	2 cut(s)	55, 350
NspI	RCATGY	1 cut(s)	308
PagI	TCATGA	1 cut(s)	700
PaqCI	CACCTGC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	167
PdiI	GCCGGC	1 cut(s)	562
PfeI	GAWTC	4 cut(s)	179, 195, 419, 467
PfoI	TCCNGGA	1 cut(s)	198
PleI	GAGTC	2 cut(s)	289, 617
PpsI	GAGTC	2 cut(s)	289, 617
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	609
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	2 cut(s)	170, 464
RsaNI	GTAC	2 cut(s)	169, 463
RseI	CAYNNNNRTG	2 cut(s)	476, 798
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	380, 798
Sau3AI	GATC	5 cut(s)	42, 256, 268, 274, 697
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	2 cut(s)	289, 617
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	3 cut(s)	114, 483, 571
SfaNI	GCATC	2 cut(s)	109, 774
SfcI	CTRYAG	1 cut(s)	605
SmiMI	CAYNNNNRTG	2 cut(s)	476, 798
SmlI	CTYRAG	2 cut(s)	86, 379
SmoI	CTYRAG	2 cut(s)	86, 379
Sse9I	AATT	3 cut(s)	400, 517, 670
SsiI	CCGC	6 cut(s)	28, 232, 728, 747, 776, 790
SspMI	CTAG	4 cut(s)	299, 321, 444, 740
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	779
TaaI	ACNGT	2 cut(s)	75, 761
TaqI	TCGA	3 cut(s)	65, 165, 173
TasI	AATT	3 cut(s)	400, 517, 670
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	3 cut(s)	235, 749, 778
TfiI	GAWTC	4 cut(s)	179, 195, 419, 467
Tru1I	TTAA	2 cut(s)	380, 798
Tru9I	TTAA	2 cut(s)	380, 798
TscAI	CASTG	2 cut(s)	571, 643
TseFI	GTSAC	2 cut(s)	55, 350
TseI	GCWGC	8 cut(s)	82, 235, 409, 601, 604, 743, 749, 752
Tsp45I	GTSAC	2 cut(s)	55, 350
TspDTI	ATGAA	2 cut(s)	225, 720
TspRI	CASTG	2 cut(s)	571, 643
Vha464I	CTTAAG	1 cut(s)	379
XapI	RAATTY	2 cut(s)	400, 670
XbaI	TCTAGA	2 cut(s)	298, 443
XceI	RCATGY	1 cut(s)	308
XspI	CTAG	4 cut(s)	299, 321, 444, 740
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.