Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

721507 .. 722663

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG010200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGGGACAGACCTCCAATCCTTAAGTATGAAAGATCTTCAGAATTTGGAGCAGCAACTTGATTCTGCTCTGAAGCACATGAGGTCTAGAAAGAATCAACTTATGTACGAATCCATTCAGTGCTTCAGAAGAAGGTGGAAGCTGTTGTTTTTGCCAATTCTTTTGTTAGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

58

Amino Acids

6.99

Weight (kDa)

9.86

Isoelectric Point (pI)

83.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	1 - 47	2.6e-15	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	43
AcuI	CTGAAG	3 cut(s)	23, 92, 109
AfaI	GTAC	1 cut(s)	107
AflII	CTTAAG	1 cut(s)	22
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	22
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	22
BssMI	GATC	1 cut(s)	34
BstAFI	CTTAAG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	1 cut(s)	142
CviKI_1	RGCY	1 cut(s)	142
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eco57I	CTGAAG	3 cut(s)	23, 92, 109
FaeI	CATG	1 cut(s)	82
FaiI	YATR	3 cut(s)	29, 80, 104
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	87
FspEI	CC	9 cut(s)	26, 29, 32, 34, 67, 118, 121, 127, 168
GluI	GCNGC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	82
HinfI	GANTC	3 cut(s)	62, 94, 110
Hpy188I	TCNGA	3 cut(s)	42, 72, 128
Hpy188III	TCNNGA	1 cut(s)	87
HpyAV	CCTTC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	87
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	2 cut(s)	29, 141
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	2 cut(s)	43, 156
MnlI	CCTC	2 cut(s)	23, 75
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	22
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	3 cut(s)	62, 94, 110
PkrI	GCNGC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	34
SetI	ASST	4 cut(s)	15, 86, 137, 144
SgeI	CNNG	3 cut(s)	71, 91, 99
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	43, 156
SspMI	CTAG	1 cut(s)	87
TasI	AATT	2 cut(s)	43, 156
TfiI	GAWTC	3 cut(s)	62, 94, 110
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	22
XapI	RAATTY	1 cut(s)	43
XbaI	TCTAGA	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.