Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

22107662 .. 22111686

Gene Structure 4025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGGAGGGGAAGGGTGCAGCTGAAGAGGATTGAGAACAAGGTCAACAGGCAGGTGACCTTCTCAAAGAGAAGGTCAGGGCTGCTGAAGAAAGCTCATGAGATTTCTGTGCTTTGTGATGCTGAGGTTGCTTTGATTATCTTCTCTACCAAAGGCAAGCTTTTTGAGTACTCCACTGATTCCTGCATGGAAAGGATCCTGGAAAGGTACGAAAGATACTCACATGCAGAGAGGCAGCTTCTTGCAAATGATAATGAATCCACTGGTAGCTGGACTCTGGAACATGCAAAGCTCAAGGCTAGGTTGGAGGTTTTGCAAAGAAATCATAGGTATACCAAGTTCAATCATTATATGGGAGAAGATCTCCAAATCTTAAGTCTCCAAGAGCTACAGAATTTAGAGCAACAGCTTGATTCTGCACTAAAGCGCATAAGGTCAAGAAAGAACCAAGTCATGTACGAATCGATTTCTGAGCTCCAGAAGAAGGATAAGGCATTGCAGGAGCAAAACAACTTGCTGGCAAAGAATGTAAAGGAGAAGGAGAAAGCAGTAGCTCCACAGGCACAATTGGATCATGCGCAGAAGCAGAGCTTGGACTTCTCCTCCACCCTTCTACCACAGGCATTGCAGTCCCTGAATTTCAGCAGGTCCAATTACCACCAGGCCATTAGATCAAGTGATGGAATATCAGGAGTTAATCAGCAGGATGGAGATGAAACCGCGATTCCACATAGACCTCACACGCTGCTGCCCCCTTGGATGCTCCGCCACCTTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

261

Amino Acids

30.14

Weight (kDa)

9.41

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc16I	TGCGCA	1 cut(s)	579
Acc36I	ACCTGC	2 cut(s)	43, 636
AccI	GTMKAC	1 cut(s)	332
AccII	CGCG	1 cut(s)	722
AciI	CCGC	2 cut(s)	720, 766
AclWI	GGATC	3 cut(s)	190, 203, 579
AcsI	RAATTY	2 cut(s)	394, 637
AcuI	CTGAAG	2 cut(s)	44, 107
AfaI	GTAC	3 cut(s)	170, 209, 458
AfiI	CCNNNNNNNGG	1 cut(s)	484
AflII	CTTAAG	1 cut(s)	373
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	198, 660
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	3 cut(s)	190, 203, 579
AlwNI	CAGNNNCTG	1 cut(s)	634
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	5 cut(s)	19, 82, 235, 745, 748
ApoI	RAATTY	2 cut(s)	394, 637
ArsI	GACNNNNNNTTYG	4 cut(s)	59, 91, 361, 393
AspLEI	GCGC	2 cut(s)	429, 580
AspS9I	GGNCC	1 cut(s)	648
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	648
BamHI	GGATCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	477
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	31, 69, 247, 732, 735
BccI	CCATC	2 cut(s)	674, 701
BciT130I	CCWGG	2 cut(s)	200, 662
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	389
BfrI	CTTAAG	1 cut(s)	373
BfuAI	ACCTGC	2 cut(s)	43, 636
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	5 cut(s)	20, 83, 236, 746, 749
BlsI	GCNGC	5 cut(s)	21, 84, 237, 747, 750
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	200, 662
Bme18I	GGWCC	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	648
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	2 cut(s)	200, 662
BmsI	GCATC	2 cut(s)	109, 750
BplI	GAGNNNNNCTC	2 cut(s)	348, 380
BpmI	CTGGAG	1 cut(s)	461
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	755
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	2 cut(s)	494, 623
BseBI	CCWGG	2 cut(s)	200, 662
BseCI	ATCGAT	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	755
BseGI	GGATG	2 cut(s)	712, 765
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMI	GCAATG	2 cut(s)	494, 623
BseMII	CTCAG	2 cut(s)	114, 462
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	592
BseXI	GCAGC	5 cut(s)	31, 69, 247, 732, 735
BsgI	GTGCAG	2 cut(s)	38, 402
Bsh1236I	CGCG	1 cut(s)	722
BshFI	GGCC	1 cut(s)	665
BshVI	ATCGAT	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	616
BsnI	GGCC	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	195, 361, 571, 671
BspACI	CCGC	2 cut(s)	720, 766
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	2 cut(s)	115, 463
BspDI	ATCGAT	1 cut(s)	464
BspFNI	CGCG	1 cut(s)	722
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	197
BspMI	ACCTGC	2 cut(s)	43, 636
BspPI	GGATC	3 cut(s)	190, 203, 579
BspTI	CTTAAG	1 cut(s)	373
BsrDI	GCAATG	2 cut(s)	494, 623
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	755
BssMI	GATC	4 cut(s)	195, 361, 571, 671
BssNAI	GTATAC	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	755
Bst1107I	GTATAC	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	200, 662
Bst6I	CTCTTC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	158, 519
BstDEI	CTNAG	2 cut(s)	123, 471
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	712, 765
BstFNI	CGCG	1 cut(s)	722
BstHHI	GCGC	2 cut(s)	429, 580
BstKTI	GATC	4 cut(s)	198, 364, 574, 674
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	4 cut(s)	195, 361, 571, 671
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 560
BstNI	CCWGG	2 cut(s)	200, 662
BstNSI	RCATGY	2 cut(s)	227, 287
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	2 cut(s)	198, 660
BstSFI	CTRYAG	1 cut(s)	389
BstUI	CGCG	1 cut(s)	722
BstV1I	GCAGC	5 cut(s)	31, 69, 247, 732, 735
BstX2I	RGATCY	2 cut(s)	195, 361
BstYI	RGATCY	2 cut(s)	195, 361
BstZ17I	GTATAC	1 cut(s)	333
Bsu15I	ATCGAT	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	665
BsuTUI	ATCGAT	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	712, 765
BtsIMutI	CAGTG	2 cut(s)	174, 261
BveI	ACCTGC	2 cut(s)	43, 636
Cac8I	GCNNGC	2 cut(s)	158, 519
CaiI	CAGNNNCTG	1 cut(s)	634
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	2 cut(s)	429, 580
Cfr13I	GGNCC	1 cut(s)	648
ClaI	ATCGAT	1 cut(s)	464
Csp6I	GTAC	3 cut(s)	169, 208, 457
CspCI	CAANNNNNGTGG	2 cut(s)	606, 641
CviAII	CATG	6 cut(s)	98, 187, 224, 284, 454, 575
CviQI	GTAC	3 cut(s)	169, 208, 457
DdeI	CTNAG	2 cut(s)	123, 471
DpnI	GATC	4 cut(s)	197, 363, 573, 673
DpnII	GATC	4 cut(s)	195, 361, 571, 671
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	755
Ecl136II	GAGCTC	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	755
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	475
Eco57I	CTGAAG	2 cut(s)	44, 107
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	475
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	198, 660
EcoT14I	CCWWGG	1 cut(s)	755
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	755
FaeI	CATG	6 cut(s)	101, 190, 227, 287, 457, 578
FalI	AAGNNNNNCTT	4 cut(s)	144, 176, 575, 607
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	6 cut(s)	97, 186, 223, 283, 453, 574
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	5 cut(s)	20, 83, 236, 746, 749
FokI	GGATG	2 cut(s)	719, 772
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	5 cut(s)	20, 83, 236, 746, 749
FspBI	CTAG	1 cut(s)	300
FspI	TGCGCA	1 cut(s)	579
GlaI	GCGC	2 cut(s)	428, 579
GluI	GCNGC	5 cut(s)	20, 83, 236, 746, 749
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	665
HhaI	GCGC	2 cut(s)	429, 580
Hin1II	CATG	6 cut(s)	101, 190, 227, 287, 457, 578
Hin6I	GCGC	2 cut(s)	427, 578
HinP1I	GCGC	2 cut(s)	427, 578
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	6 cut(s)	179, 257, 274, 413, 461, 724
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	46, 333
Hpy188I	TCNGA	1 cut(s)	472
Hpy188III	TCNNGA	5 cut(s)	98, 278, 438, 478, 690
Hpy8I	GTNNAC	2 cut(s)	46, 333
HpyAV	CCTTC	6 cut(s)	6, 66, 70, 478, 532, 620
HpyCH4V	TGCA	9 cut(s)	19, 186, 227, 245, 287, 316, 419, 499, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 560
HpyF3I	CTNAG	2 cut(s)	123, 471
Hsp92II	CATG	6 cut(s)	101, 190, 227, 287, 457, 578
HspAI	GCGC	2 cut(s)	427, 578
Kzo9I	GATC	4 cut(s)	195, 361, 571, 671
LmnI	GCTCC	4 cut(s)	480, 502, 559, 768
Lsp1109I	GCAGC	5 cut(s)	31, 69, 247, 732, 735
LweI	GCATC	2 cut(s)	109, 750
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	197, 363, 573, 673
MboI	GATC	4 cut(s)	195, 361, 571, 671
MboII	GAAGA	5 cut(s)	37, 100, 133, 371, 493
MfeI	CAATTG	1 cut(s)	566
MflI	RGATCY	2 cut(s)	195, 361
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	4 cut(s)	394, 566, 637, 652
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	6 cut(s)	21, 118, 225, 301, 613, 747
MseI	TTAA	3 cut(s)	374, 696, 774
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	22
MspCI	CTTAAG	1 cut(s)	373
MspR9I	CCNGG	2 cut(s)	200, 662
MunI	CAATTG	1 cut(s)	566
MvaI	CCWGG	2 cut(s)	200, 662
MvnI	CGCG	1 cut(s)	722
MwoI	GCNNNNNNNGC	2 cut(s)	128, 560
NdeII	GATC	4 cut(s)	195, 361, 571, 671
NlaIII	CATG	6 cut(s)	101, 190, 227, 287, 457, 578
NlaIV	GGNNCC	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	55
NsbI	TGCGCA	1 cut(s)	579
NspI	RCATGY	2 cut(s)	227, 287
PagI	TCATGA	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	5 cut(s)	179, 257, 413, 461, 724
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	5 cut(s)	21, 84, 237, 747, 750
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	477
Psp6I	CCWGG	2 cut(s)	198, 660
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	2 cut(s)	198, 660
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	648
PsrI	GAACNNNNNNTAC	2 cut(s)	323, 355
PstNI	CAGNNNCTG	1 cut(s)	634
PsuI	RGATCY	2 cut(s)	195, 361
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	3 cut(s)	170, 209, 458
RsaNI	GTAC	3 cut(s)	169, 208, 457
RseI	CAYNNNNRTG	1 cut(s)	774
SacI	GAGCTC	1 cut(s)	477
SaqAI	TTAA	3 cut(s)	374, 696, 774
SatI	GCNGC	5 cut(s)	20, 83, 236, 746, 749
Sau3AI	GATC	4 cut(s)	195, 361, 571, 671
Sau96I	GGNCC	1 cut(s)	648
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	200, 662
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	2 cut(s)	109, 750
SfcI	CTRYAG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	2 cut(s)	293, 373
SmoI	CTYRAG	2 cut(s)	293, 373
Sse9I	AATT	4 cut(s)	394, 566, 637, 652
SsiI	CCGC	2 cut(s)	720, 766
SspMI	CTAG	1 cut(s)	300
SstI	GAGCTC	1 cut(s)	477
StyD4I	CCNGG	2 cut(s)	198, 660
StyI	CCWWGG	1 cut(s)	755
TaqI	TCGA	1 cut(s)	464
TasI	AATT	4 cut(s)	394, 566, 637, 652
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	5 cut(s)	179, 257, 413, 461, 724
Tru1I	TTAA	3 cut(s)	374, 696, 774
Tru9I	TTAA	3 cut(s)	374, 696, 774
TscAI	CASTG	2 cut(s)	181, 268
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	5 cut(s)	19, 82, 235, 745, 748
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	270, 729
TspRI	CASTG	2 cut(s)	181, 268
Vha464I	CTTAAG	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	648
XapI	RAATTY	2 cut(s)	394, 637
XceI	RCATGY	2 cut(s)	227, 287
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	1 cut(s)	300
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.