Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

34006445 .. 34010586

Gene Structure 4142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1204400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGGAGGGGAAGGGTGCAGCTGAAGAGGATTGAGAACAAGATCAACAGGCAGGTGACCTTCTCAAAGAGAACGTCAGGGCTGCTGAAGAAAGCTCATGAGATTTCTGTACTTTGTGATGCTGAGGTTGCTTTGATTGTCTTCTCTACCAAAGGCAAGCTTTTTGAGTACTCCACTGATTCCTGCATGGAAAGGATCCTGGAAAGGTACGAAAGATACTCACATGCAGAGAGGCAGCTTCTTGCAAATGATAATGAATCCACTGGGAACTGGACTCTGGAACATGCAAAGCTCAAGGCTAGGGTGGAGGTTTTACAAAGAAATCAAAGTCATTATATGGGAGAAGATCTCCAAATCTTAAGTTTCCAAGAGCTTCAGAATTTAGAGCAACAGCTTGATTCTGCACTAAGGCGCATAAGGTCAAGAAAGAACCAAGTCATGTACGAATCGATTTCTGAGCTCCAGAAGAAGGATAAGGCATTGCAGGAGCAAAACAACTTGCTGGCAAAGAATGTAAAGGAGAAGGAGAAAGCAGTAACTTCACAGGCACAATTGGAGCATGCGCAGAAGCAGAGCTTGGACTCCTCCTCCACCCTTCTACCACAGGAATTGCAGTACTTGAATTTCAGATGGAGAGAAAATATATGGGAAAAACGAGGAATGAAGGATGATTGGAAGGTGGTGGGAGGGAGGAGAAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

235

Amino Acids

27.52

Weight (kDa)

9.6

Isoelectric Point (pI)

59.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	8.7e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 172	6.2e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc16I	TGCGCA	1 cut(s)	564
Acc36I	ACCTGC	1 cut(s)	43
AclWI	GGATC	2 cut(s)	190, 203
AcsI	RAATTY	2 cut(s)	379, 622
AcuI	CTGAAG	3 cut(s)	44, 107, 359
AfaI	GTAC	5 cut(s)	111, 170, 209, 443, 617
AfiI	CCNNNNNNNGG	1 cut(s)	469
AflII	CTTAAG	1 cut(s)	358
AgsI	TTSAA	1 cut(s)	622
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	9 cut(s)	22, 95, 160, 238, 292, 373, 394, 460, 576
AluI	AGCT	9 cut(s)	22, 95, 160, 238, 292, 373, 394, 460, 576
Alw21I	GWGCWC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	190, 203
ApeKI	GCWGC	3 cut(s)	19, 82, 235
ApoI	RAATTY	2 cut(s)	379, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	2 cut(s)	414, 565
AsuHPI	GGTGA	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	462
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	31, 69, 247
BccI	CCATC	1 cut(s)	624
BciT130I	CCWGG	1 cut(s)	200
BfaI	CTAG	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	3 cut(s)	20, 83, 236
BlsI	GCNGC	3 cut(s)	21, 84, 237
BmcAI	AGTACT	2 cut(s)	170, 617
Bme1390I	CCNGG	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	200
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	333, 365
BpmI	CTGGAG	1 cut(s)	446
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	449
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	268, 275
Bse3DI	GCAATG	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	200
BseCI	ATCGAT	1 cut(s)	449
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMI	GCAATG	1 cut(s)	479
BseMII	CTCAG	2 cut(s)	114, 447
BseNI	ACTGG	2 cut(s)	268, 275
BseRI	GAGGAG	2 cut(s)	574, 577
BseXI	GCAGC	3 cut(s)	31, 69, 247
BsgI	GTGCAG	2 cut(s)	38, 387
BshVI	ATCGAT	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	3 cut(s)	42, 195, 346
BspCNI	CTCAG	2 cut(s)	115, 448
BspDI	ATCGAT	1 cut(s)	449
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	197
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	190, 203
BspTI	CTTAAG	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	479
BsrI	ACTGG	2 cut(s)	268, 275
BssMI	GATC	3 cut(s)	42, 195, 346
Bst2UI	CCWGG	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	358
BstC8I	GCNNGC	3 cut(s)	158, 504, 561
BstDEI	CTNAG	3 cut(s)	123, 407, 456
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	673
BstHHI	GCGC	2 cut(s)	414, 565
BstKTI	GATC	3 cut(s)	45, 198, 349
BstMBI	GATC	3 cut(s)	42, 195, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	3 cut(s)	227, 287, 563
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	31, 69, 247
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	2 cut(s)	195, 346
BstYI	RGATCY	2 cut(s)	195, 346
Bsu15I	ATCGAT	1 cut(s)	449
BsuTUI	ATCGAT	1 cut(s)	449
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	174, 261
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	158, 504, 561
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	2 cut(s)	414, 565
ClaI	ATCGAT	1 cut(s)	449
Csp6I	GTAC	5 cut(s)	110, 169, 208, 442, 616
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	6 cut(s)	98, 187, 224, 284, 439, 560
CviQI	GTAC	5 cut(s)	110, 169, 208, 442, 616
DdeI	CTNAG	3 cut(s)	123, 407, 456
DpnI	GATC	3 cut(s)	44, 197, 348
DpnII	GATC	3 cut(s)	42, 195, 346
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	3 cut(s)	44, 107, 359
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	460
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	462
FaeI	CATG	6 cut(s)	101, 190, 227, 287, 442, 563
FalI	AAGNNNNNCTT	4 cut(s)	144, 176, 560, 592
FatI	CATG	6 cut(s)	97, 186, 223, 283, 438, 559
Fnu4HI	GCNGC	3 cut(s)	20, 83, 236
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	3 cut(s)	20, 83, 236
FspBI	CTAG	1 cut(s)	300
FspI	TGCGCA	1 cut(s)	564
GlaI	GCGC	2 cut(s)	413, 564
GluI	GCNGC	3 cut(s)	20, 83, 236
GsuI	CTGGAG	1 cut(s)	446
HhaI	GCGC	2 cut(s)	414, 565
Hin1II	CATG	6 cut(s)	101, 190, 227, 287, 442, 563
Hin6I	GCGC	2 cut(s)	412, 563
HinP1I	GCGC	2 cut(s)	412, 563
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	6 cut(s)	179, 257, 274, 398, 446, 581
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	378, 457, 629
Hpy188III	TCNNGA	4 cut(s)	98, 278, 423, 463
HpyAV	CCTTC	7 cut(s)	6, 70, 463, 517, 605, 658, 670
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	8 cut(s)	19, 186, 227, 245, 287, 404, 484, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	3 cut(s)	123, 407, 456
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	6 cut(s)	101, 190, 227, 287, 442, 563
HspAI	GCGC	2 cut(s)	412, 563
Kzo9I	GATC	3 cut(s)	42, 195, 346
LmnI	GCTCC	3 cut(s)	465, 487, 556
Lsp1109I	GCAGC	3 cut(s)	31, 69, 247
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	55, 535
MalI	GATC	3 cut(s)	44, 197, 348
MboI	GATC	3 cut(s)	42, 195, 346
MboII	GAAGA	5 cut(s)	37, 100, 133, 356, 478
MfeI	CAATTG	1 cut(s)	551
MflI	RGATCY	2 cut(s)	195, 346
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	4 cut(s)	379, 551, 608, 622
MlyI	GAGTC	2 cut(s)	268, 575
MnlI	CCTC	9 cut(s)	21, 118, 225, 301, 595, 598, 650, 680, 684
MseI	TTAA	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	22
MspCI	CTTAAG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	3 cut(s)	42, 195, 346
NlaIII	CATG	6 cut(s)	101, 190, 227, 287, 442, 563
NlaIV	GGNNCC	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	55
NsbI	TGCGCA	1 cut(s)	564
NspI	RCATGY	3 cut(s)	227, 287, 563
PaeI	GCATGC	1 cut(s)	563
PagI	TCATGA	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	4 cut(s)	179, 257, 398, 446
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	21, 84, 237
PleI	GAGTC	2 cut(s)	268, 575
PpsI	GAGTC	2 cut(s)	268, 575
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	195, 346
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	5 cut(s)	111, 170, 209, 443, 617
RsaNI	GTAC	5 cut(s)	110, 169, 208, 442, 616
SacI	GAGCTC	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	3 cut(s)	20, 83, 236
Sau3AI	GATC	3 cut(s)	42, 195, 346
ScaI	AGTACT	2 cut(s)	170, 617
SchI	GAGTC	2 cut(s)	268, 575
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	293, 358
SmoI	CTYRAG	2 cut(s)	293, 358
SphI	GCATGC	1 cut(s)	563
Sse9I	AATT	4 cut(s)	379, 551, 608, 622
SspMI	CTAG	1 cut(s)	300
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	198
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	449
TasI	AATT	4 cut(s)	379, 551, 608, 622
TatI	WGTACW	3 cut(s)	109, 168, 615
TfiI	GAWTC	4 cut(s)	179, 257, 398, 446
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	2 cut(s)	181, 268
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	19, 82, 235
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	270, 677
TspRI	CASTG	2 cut(s)	181, 268
Vha464I	CTTAAG	1 cut(s)	358
XapI	RAATTY	2 cut(s)	379, 622
XceI	RCATGY	3 cut(s)	227, 287, 563
XspI	CTAG	1 cut(s)	300
ZrmI	AGTACT	2 cut(s)	170, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.