Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Reverse (-)

64526652 .. 64532341

Gene Structure 5690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005041

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGGGAGGGGAAGGGTTCAGTTGAAGCGGATAGAGAACAAGATCAATAGGCAGGTAACTTTCTCGAAGAGAAGGTCTGGGCTGCTCAAGAAGGCGCATGAGATTTCTGTACTCTGCGATGCTGAGGTCGCTTTGATAGTCTTCTCCACCAAAGGCAAGCTCTTCGAGTACTCGACCGATTCTTGCATGGAAAGAATCCTGGAAAGGTATGAAAGATACTCATACGCAGAGCGGCAGCTTCTTGGAAATAATCACGATCACGACCACGATCAAGATCAATCAAATGGAAACTGGACTCTAGAACATGCAAAGCTCAAAGCTAGGGTGGAGGTTTTACAGAGAAATCAAAGTCATTTTATGGGGGAAGACCTACAATCCTTAAGTTTGAAAGAGCTTCAGAATTTGGAGCAGCAACTTGATTCTGCTCTGAAGCACATAAGGTCTAGAAAGAACCAACTTATGCACGAATCCATTTCAGTGCTCCAGAAGAAGGATAAGGTGTTGCAGGAGCAAAATAATTTGCTGACAAAAAAGGAGAAGGAGAAGGAGAAAGCAGTAGCCAGCAGTGCCCCACCAGCACAGGCACAATGGGAGCAGCTGCAGAGGCACAGCTTGGACTCCTCCTCCAGCAGTGCCTTTCTACCTCAGGCTTTGCAGTCCTTGAATTTCAGAGGCTCATCTGGAGACTATGATCATGATGAAGAAACCCCACCTCCACATCCGCCTCAACATCTAGCTGCCGCTGCTGCCAACAGTAATACGCTTCTGCCGCCTTGGATGCTCCGCCACCTTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

267

Amino Acids

30.53

Weight (kDa)

8.43

Isoelectric Point (pI)

62.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	9.4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 178	4.7e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	232
AciI	CCGC	6 cut(s)	28, 232, 722, 741, 770, 784
AcsI	RAATTY	2 cut(s)	400, 664
AcuI	CTGAAG	2 cut(s)	380, 449
AfaI	GTAC	2 cut(s)	111, 170
AfiI	CCNNNNNNNGG	1 cut(s)	490
AflII	CTTAAG	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	25, 388, 664
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	8 cut(s)	160, 238, 313, 320, 394, 598, 612, 737
AluI	AGCT	8 cut(s)	160, 238, 313, 320, 394, 598, 612, 737
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	1 cut(s)	678
ApeKI	GCWGC	8 cut(s)	82, 235, 409, 595, 598, 737, 743, 746
ApoI	RAATTY	2 cut(s)	400, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	1 cut(s)	97
AxyI	CCTNAGG	1 cut(s)	645
BaeGI	GKGCMC	1 cut(s)	571
BbsI	GAAGAC	2 cut(s)	133, 372
Bbv12I	GWGCWC	1 cut(s)	483
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	8 cut(s)	69, 247, 421, 585, 607, 724, 730, 733
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	1 cut(s)	678
BfaI	CTAG	4 cut(s)	299, 321, 444, 734
BfmI	CTRYAG	1 cut(s)	599
BfrI	CTTAAG	1 cut(s)	379
BfuAI	ACCTGC	1 cut(s)	43
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	109, 768
BpiI	GAAGAC	2 cut(s)	133, 372
BpmI	CTGGAG	3 cut(s)	467, 610, 702
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	773
BsaXI	ACNNNNNCTCC	4 cut(s)	608, 638, 697, 727
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	296
Bse21I	CCTNAGG	1 cut(s)	645
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	773
BseGI	GGATG	2 cut(s)	718, 783
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMII	CTCAG	2 cut(s)	114, 659
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	610, 613
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	8 cut(s)	69, 247, 421, 585, 607, 724, 730, 733
Bsh1285I	CGRYCG	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	678
Bsp1286I	GDGCHC	2 cut(s)	483, 571
Bsp143I	GATC	5 cut(s)	42, 256, 268, 274, 691
BspACI	CCGC	6 cut(s)	28, 232, 722, 741, 770, 784
BspCNI	CTCAG	2 cut(s)	115, 658
BspHI	TCATGA	1 cut(s)	694
BspMAI	CTGCAG	1 cut(s)	603
BspMI	ACCTGC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	773
BssMI	GATC	5 cut(s)	42, 256, 268, 274, 691
BssT1I	CCWWGG	1 cut(s)	773
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	755
Bst6I	CTCTTC	2 cut(s)	62, 167
BstAFI	CTTAAG	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	158, 562
BstDEI	CTNAG	2 cut(s)	123, 645
BstF5I	GGATG	2 cut(s)	718, 783
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	5 cut(s)	45, 259, 271, 277, 694
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	5 cut(s)	42, 256, 268, 274, 691
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	8 cut(s)	128, 566, 575, 604, 743, 746, 769, 778
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	599
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	8 cut(s)	69, 247, 421, 585, 607, 724, 730, 733
BstV2I	GAAGAC	2 cut(s)	133, 372
Bsu36I	CCTNAGG	1 cut(s)	645
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	718, 783
BtsI	GCAGTG	2 cut(s)	571, 637
BtsIMutI	CAGTG	3 cut(s)	483, 571, 637
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	158, 562
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	110, 169
CviAII	CATG	4 cut(s)	98, 187, 305, 695
CviQI	GTAC	2 cut(s)	110, 169
DdeI	CTNAG	2 cut(s)	123, 645
DpnI	GATC	5 cut(s)	44, 258, 270, 276, 693
DpnII	GATC	5 cut(s)	42, 256, 268, 274, 691
Eam1104I	CTCTTC	2 cut(s)	62, 167
EarI	CTCTTC	2 cut(s)	62, 167
EciI	GGCGGA	2 cut(s)	711, 773
Eco130I	CCWWGG	1 cut(s)	773
Eco57I	CTGAAG	2 cut(s)	380, 449
Eco81I	CCTNAGG	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	773
ErhI	CCWWGG	1 cut(s)	773
FaeI	CATG	4 cut(s)	101, 190, 308, 698
FatI	CATG	4 cut(s)	97, 186, 304, 694
FbaI	TGATCA	1 cut(s)	691
FokI	GGATG	2 cut(s)	705, 790
FspBI	CTAG	4 cut(s)	299, 321, 444, 734
GlaI	GCGC	1 cut(s)	96
GsuI	CTGGAG	3 cut(s)	467, 610, 702
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	4 cut(s)	101, 190, 308, 698
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	6 cut(s)	179, 195, 295, 419, 467, 617
Hpy188I	TCNGA	3 cut(s)	399, 429, 671
HpyAV	CCTTC	6 cut(s)	6, 66, 85, 484, 532, 538
HpyCH4III	ACNGT	1 cut(s)	755
HpyCH4V	TGCA	6 cut(s)	186, 308, 463, 505, 601, 655
HpyF10VI	GCNNNNNNNGC	8 cut(s)	128, 566, 575, 604, 743, 746, 769, 778
HpyF3I	CTNAG	2 cut(s)	123, 645
Hsp92II	CATG	4 cut(s)	101, 190, 308, 698
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	5 cut(s)	42, 256, 268, 274, 691
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	5 cut(s)	406, 486, 508, 592, 786
Lsp1109I	GCAGC	8 cut(s)	69, 247, 421, 585, 607, 724, 730, 733
LweI	GCATC	2 cut(s)	109, 768
MaeI	CTAG	4 cut(s)	299, 321, 444, 734
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	5 cut(s)	44, 258, 270, 276, 693
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	5 cut(s)	42, 256, 268, 274, 691
MboII	GAAGA	6 cut(s)	79, 133, 154, 377, 499, 713
MhlI	GDGCHC	2 cut(s)	483, 571
MluCI	AATT	3 cut(s)	400, 517, 664
MlyI	GAGTC	2 cut(s)	289, 611
MnlI	CCTC	9 cut(s)	118, 322, 597, 631, 634, 654, 665, 723, 735
MseI	TTAA	2 cut(s)	380, 792
MslI	CAYNNNNRTG	2 cut(s)	476, 792
MspA1I	CMGCKG	2 cut(s)	598, 743
MspCI	CTTAAG	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	8 cut(s)	128, 566, 575, 604, 743, 746, 769, 778
NdeII	GATC	5 cut(s)	42, 256, 268, 274, 691
NlaIII	CATG	4 cut(s)	101, 190, 308, 698
NspI	RCATGY	1 cut(s)	308
PagI	TCATGA	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	167
PfeI	GAWTC	4 cut(s)	179, 195, 419, 467
PfoI	TCCNGGA	1 cut(s)	198
PleI	GAGTC	2 cut(s)	289, 611
PpsI	GAGTC	2 cut(s)	289, 611
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	603
PvuII	CAGCTG	1 cut(s)	598
RsaI	GTAC	2 cut(s)	111, 170
RsaNI	GTAC	2 cut(s)	110, 169
RseI	CAYNNNNRTG	2 cut(s)	476, 792
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	380, 792
Sau3AI	GATC	5 cut(s)	42, 256, 268, 274, 691
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	2 cut(s)	289, 611
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	483, 571
SfaNI	GCATC	2 cut(s)	109, 768
SfcI	CTRYAG	1 cut(s)	599
SmiMI	CAYNNNNRTG	2 cut(s)	476, 792
SmlI	CTYRAG	2 cut(s)	86, 379
SmoI	CTYRAG	2 cut(s)	86, 379
Sse9I	AATT	3 cut(s)	400, 517, 664
SsiI	CCGC	6 cut(s)	28, 232, 722, 741, 770, 784
SspMI	CTAG	4 cut(s)	299, 321, 444, 734
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	773
TaaI	ACNGT	1 cut(s)	755
TaqI	TCGA	3 cut(s)	65, 165, 173
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	3 cut(s)	400, 517, 664
TatI	WGTACW	2 cut(s)	109, 168
TauI	GCSGC	3 cut(s)	235, 743, 772
TfiI	GAWTC	4 cut(s)	179, 195, 419, 467
Tru1I	TTAA	2 cut(s)	380, 792
Tru9I	TTAA	2 cut(s)	380, 792
TscAI	CASTG	3 cut(s)	483, 571, 637
TseI	GCWGC	8 cut(s)	82, 235, 409, 595, 598, 737, 743, 746
TspDTI	ATGAA	2 cut(s)	225, 714
TspRI	CASTG	3 cut(s)	483, 571, 637
Vha464I	CTTAAG	1 cut(s)	379
XapI	RAATTY	2 cut(s)	400, 664
XbaI	TCTAGA	2 cut(s)	298, 443
XceI	RCATGY	1 cut(s)	308
XspI	CTAG	4 cut(s)	299, 321, 444, 734
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.