Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

4607245 .. 4614075

Gene Structure 6831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTGGTCGGGCCCATCATTATCTGATACAAATCCACCAATAAACGATTGTCACAGAAGCTCTGGCCAATGGCAAGTCGACAACGTTTTGACGAAACCACTCCGGTTTTGGAAATCCCACCATCTCCGCCCATGGAGCATGGAAAGAATCCTGGAAAGGTATGAAAGATACTCATACGCAGAGCGGCAGCTTCTTGGAAATAATCACGATAACGACCACGATCAAGATCAATCAAATGGAAACTGGACTCTAGAACATGCAAAGCTCAAAGCTAGGGTGGAGGTTTTACAGAGAAATCAAAGTCACTTTATGGGGGAAGACCTACAATCCTTAAGTTTGAAAGAGCTTCAGAATTTGGAGCAGCAACTTGATTCTGCTCTGAAGCACATAAGGTCTAGAAAGAACCAACTTATGTACGAATCCATTTCGGTGCTCCAGAAGAAGGATAAGGTGTTGCAGGAGCAAAATAATTTGCTGACAAAAAAGGTCAAGGAGAAGGAGAAGGAGAGAGAAGTAGCCGGCAGTGCCCCACAAGCACAGGCACAGGCACAATGGGAGCAGATGCAGAGGCACAGCTTGGACTCCTCCTCCAGCAGTGCCTTTCTACCTCAGGCTTTGCAGTCCTTGAATTTCAGAGGCTCATCTGGAGACTATGATCATGATGAAGAAACCCCACCTCCACCTCCGCCTCAACATCTAGCTGCCGCTGCTGCCAACAGTAATACGCTCCTGCCGCCTTGGATGCTCCGCCACCTTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

254

Amino Acids

29.37

Weight (kDa)

6.46

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	75 - 163	8.2e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	6 cut(s)	127, 184, 686, 705, 734, 748
AclI	AACGTT	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	352, 628
AcuI	CTGAAG	2 cut(s)	332, 401
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	442
AflII	CTTAAG	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	340, 628
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	7 cut(s)	60, 190, 265, 272, 346, 576, 701
AluI	AGCT	7 cut(s)	60, 190, 265, 272, 346, 576, 701
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	1 cut(s)	642
AoxI	GGCC	2 cut(s)	10, 64
ApaI	GGGCCC	1 cut(s)	14
ApeKI	GCWGC	5 cut(s)	187, 361, 701, 707, 710
ApoI	RAATTY	2 cut(s)	352, 628
AspS9I	GGNCC	2 cut(s)	10, 11
AxyI	CCTNAGG	1 cut(s)	609
BaeGI	GKGCMC	2 cut(s)	14, 529
BalI	TGGCCA	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	5 cut(s)	199, 373, 688, 694, 697
BccI	CCATC	2 cut(s)	22, 129
BciT130I	CCWGG	1 cut(s)	152
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	1 cut(s)	642
BfaI	CTAG	4 cut(s)	251, 273, 396, 698
BfrI	CTTAAG	1 cut(s)	331
BisI	GCNGC	8 cut(s)	185, 188, 362, 702, 705, 708, 711, 734
BlsI	GCNGC	8 cut(s)	186, 189, 363, 703, 706, 709, 712, 735
Bme1390I	CCNGG	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	10, 11
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	2 cut(s)	552, 732
BpiI	GAAGAC	1 cut(s)	324
BpmI	CTGGAG	3 cut(s)	419, 574, 666
BsaBI	GATNNNNATC	2 cut(s)	30, 225
BsaJI	CCNNGG	2 cut(s)	131, 737
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	4 cut(s)	572, 602, 661, 691
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	248
Bse21I	CCTNAGG	1 cut(s)	609
Bse8I	GATNNNNATC	2 cut(s)	30, 225
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	131, 737
BseGI	GGATG	1 cut(s)	747
BseJI	GATNNNNATC	2 cut(s)	30, 225
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	2 cut(s)	574, 577
BseSI	GKGCMC	2 cut(s)	14, 529
BseXI	GCAGC	5 cut(s)	199, 373, 688, 694, 697
BshFI	GGCC	2 cut(s)	12, 66
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	2 cut(s)	103, 519
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	642
BsnI	GGCC	2 cut(s)	12, 66
Bsp120I	GGGCCC	1 cut(s)	10
Bsp1286I	GDGCHC	3 cut(s)	14, 435, 529
Bsp143I	GATC	3 cut(s)	220, 226, 655
Bsp19I	CCATGG	1 cut(s)	131
BspACI	CCGC	6 cut(s)	127, 184, 686, 705, 734, 748
BspANI	GGCC	2 cut(s)	12, 66
BspCNI	CTCAG	1 cut(s)	622
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	331
BsrBI	CCGCTC	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	131, 737
BssMI	GATC	3 cut(s)	220, 226, 655
BssT1I	CCWWGG	2 cut(s)	131, 737
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	719
BstAFI	CTTAAG	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	1 cut(s)	609
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	747
BstKTI	GATC	3 cut(s)	223, 229, 658
BstMAI	GTCTC	1 cut(s)	642
BstMBI	GATC	3 cut(s)	220, 226, 655
BstMWI	GCNNNNNNNGC	7 cut(s)	135, 524, 533, 707, 710, 733, 742
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	150
BstSLI	GKGCMC	2 cut(s)	14, 529
BstV1I	GCAGC	5 cut(s)	199, 373, 688, 694, 697
BstV2I	GAAGAC	1 cut(s)	324
Bsu36I	CCTNAGG	1 cut(s)	609
BsuRI	GGCC	2 cut(s)	12, 66
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	747
BtsI	GCAGTG	2 cut(s)	529, 601
BtsIMutI	CAGTG	2 cut(s)	529, 601
Cac8I	GCNNGC	1 cut(s)	520
CciI	TCATGA	1 cut(s)	658
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	2 cut(s)	10, 11
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	4 cut(s)	132, 139, 257, 659
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	3 cut(s)	222, 228, 657
DpnII	GATC	3 cut(s)	220, 226, 655
EaeI	YGGCCR	1 cut(s)	64
EciI	GGCGGA	3 cut(s)	116, 675, 737
Eco130I	CCWWGG	2 cut(s)	131, 737
Eco24I	GRGCYC	1 cut(s)	14
Eco57I	CTGAAG	2 cut(s)	332, 401
Eco81I	CCTNAGG	1 cut(s)	609
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	131, 737
EcoT38I	GRGCYC	1 cut(s)	14
ErhI	CCWWGG	2 cut(s)	131, 737
FaeI	CATG	4 cut(s)	135, 142, 260, 662
FatI	CATG	4 cut(s)	131, 138, 256, 658
FbaI	TGATCA	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	8 cut(s)	185, 188, 362, 702, 705, 708, 711, 734
FokI	GGATG	1 cut(s)	754
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	8 cut(s)	185, 188, 362, 702, 705, 708, 711, 734
FspBI	CTAG	4 cut(s)	251, 273, 396, 698
GluI	GCNGC	8 cut(s)	185, 188, 362, 702, 705, 708, 711, 734
GsuI	CTGGAG	3 cut(s)	419, 574, 666
HaeIII	GGCC	2 cut(s)	12, 66
HapII	CCGG	2 cut(s)	103, 519
Hin1II	CATG	4 cut(s)	135, 142, 260, 662
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	5 cut(s)	147, 247, 371, 419, 581
HpaII	CCGG	2 cut(s)	103, 519
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	4 cut(s)	25, 351, 381, 635
Hpy188III	TCNNGA	7 cut(s)	206, 224, 251, 396, 436, 645, 659
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	3 cut(s)	436, 490, 496
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	260, 457, 565, 619
HpyF10VI	GCNNNNNNNGC	7 cut(s)	135, 524, 533, 707, 710, 733, 742
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	135, 142, 260, 662
KroI	GCCGGC	1 cut(s)	518
KroNI	GCCGGC	1 cut(s)	520
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	3 cut(s)	220, 226, 655
LmnI	GCTCC	7 cut(s)	135, 358, 438, 460, 556, 732, 750
Lsp1109I	GCAGC	5 cut(s)	199, 373, 688, 694, 697
LweI	GCATC	2 cut(s)	552, 732
MaeI	CTAG	4 cut(s)	251, 273, 396, 698
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	50, 302
MalI	GATC	3 cut(s)	222, 228, 657
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	3 cut(s)	220, 226, 655
MboII	GAAGA	3 cut(s)	329, 451, 677
MhlI	GDGCHC	3 cut(s)	14, 435, 529
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	3 cut(s)	352, 469, 628
MluNI	TGGCCA	1 cut(s)	66
MlyI	GAGTC	2 cut(s)	241, 575
MnlI	CCTC	9 cut(s)	274, 561, 595, 598, 618, 629, 687, 693, 699
Mox20I	TGGCCA	1 cut(s)	66
MroNI	GCCGGC	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	2 cut(s)	332, 756
MslI	CAYNNNNRTG	2 cut(s)	428, 756
Msp20I	TGGCCA	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	707
MspCI	CTTAAG	1 cut(s)	331
MspI	CCGG	2 cut(s)	103, 519
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	7 cut(s)	135, 524, 533, 707, 710, 733, 742
NaeI	GCCGGC	1 cut(s)	520
NcoI	CCATGG	1 cut(s)	131
NdeII	GATC	3 cut(s)	220, 226, 655
NgoMIV	GCCGGC	1 cut(s)	518
NlaIII	CATG	4 cut(s)	135, 142, 260, 662
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	2 cut(s)	50, 302
NspI	RCATGY	1 cut(s)	260
PagI	TCATGA	1 cut(s)	658
PdiI	GCCGGC	1 cut(s)	520
PfeI	GAWTC	3 cut(s)	147, 371, 419
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	8 cut(s)	186, 189, 363, 703, 706, 709, 712, 735
PleI	GAGTC	2 cut(s)	241, 575
PpsI	GAGTC	2 cut(s)	241, 575
Psp1406I	AACGTT	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	12
PspOMI	GGGCCC	1 cut(s)	10
PspPI	GGNCC	2 cut(s)	10, 11
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	2 cut(s)	428, 756
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	332, 756
SatI	GCNGC	8 cut(s)	185, 188, 362, 702, 705, 708, 711, 734
Sau3AI	GATC	3 cut(s)	220, 226, 655
Sau96I	GGNCC	2 cut(s)	10, 11
SchI	GAGTC	2 cut(s)	241, 575
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	3 cut(s)	14, 435, 529
SfaNI	GCATC	2 cut(s)	552, 732
SmiMI	CAYNNNNRTG	2 cut(s)	428, 756
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	3 cut(s)	352, 469, 628
SsiI	CCGC	6 cut(s)	127, 184, 686, 705, 734, 748
SspMI	CTAG	4 cut(s)	251, 273, 396, 698
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	2 cut(s)	131, 737
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	78
TasI	AATT	3 cut(s)	352, 469, 628
TauI	GCSGC	3 cut(s)	187, 707, 736
TfiI	GAWTC	3 cut(s)	147, 371, 419
Tru1I	TTAA	2 cut(s)	332, 756
Tru9I	TTAA	2 cut(s)	332, 756
TscAI	CASTG	2 cut(s)	529, 601
TseFI	GTSAC	2 cut(s)	50, 302
TseI	GCWGC	5 cut(s)	187, 361, 701, 707, 710
Tsp45I	GTSAC	2 cut(s)	50, 302
TspDTI	ATGAA	2 cut(s)	177, 678
TspRI	CASTG	2 cut(s)	529, 601
Vha464I	CTTAAG	1 cut(s)	331
XapI	RAATTY	2 cut(s)	352, 628
XbaI	TCTAGA	2 cut(s)	250, 395
XceI	RCATGY	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	105
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	4 cut(s)	251, 273, 396, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.