Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005581.1

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Reverse (-)

35958 .. 38938

Gene Structure 2981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005581.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgcctggatgtgctcactgccagaggcatgcatcaccagttcgatggagtttgattctattaagcatcatagacatttctgcccctggattgcatcaacaggtaatggagcacctggatggaaacaagcacactcagctttacaatgtcaagaagggatcacaacttctggaccttcatagagtgagttcatatatacagaagagtatttctgttttcagggaaactggactttggaacatgcaaagctcaaagctagggtgggggttttacagagaaatcaaagtcattttattgggggaggacctcctatccttaagtatgaaagagcttcagaatttggacctgcaacttgattttgctctaaagcacataaggtctagaaaggtgcaaaatcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

133

Amino Acids

15.3

Weight (kDa)

9.43

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	354
AclWI	GGATC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	317
AflII	CTTAAG	1 cut(s)	316
AjnI	CCWGG	3 cut(s)	4, 85, 114
AluBI	AGCT	4 cut(s)	139, 249, 256, 331
AluI	AGCT	4 cut(s)	139, 249, 256, 331
Alw21I	GWGCWC	2 cut(s)	16, 114
AlwI	GGATC	1 cut(s)	166
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	3 cut(s)	172, 304, 343
AsuHPI	GGTGA	1 cut(s)	27
AvaII	GGWCC	3 cut(s)	172, 304, 343
Bbv12I	GWGCWC	2 cut(s)	16, 114
BccI	CCATC	2 cut(s)	39, 113
BciT130I	CCWGG	3 cut(s)	6, 87, 116
BfaI	CTAG	2 cut(s)	257, 381
BfrI	CTTAAG	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	354
Bme1390I	CCNGG	3 cut(s)	6, 87, 116
Bme18I	GGWCC	3 cut(s)	172, 304, 343
BmgT120I	GGNCC	3 cut(s)	172, 304, 343
BmrFI	CCNGG	3 cut(s)	6, 87, 116
BmsI	GCATC	3 cut(s)	41, 75, 103
BsaJI	CCNNGG	1 cut(s)	85
Bse1I	ACTGG	2 cut(s)	38, 232
BseBI	CCWGG	3 cut(s)	6, 87, 116
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	14, 124
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	38, 232
BsiHKAI	GWGCWC	2 cut(s)	16, 114
Bsp1286I	GDGCHC	2 cut(s)	16, 114
Bsp143I	GATC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	166
BspTI	CTTAAG	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	38, 232
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	158
Bst2UI	CCWGG	3 cut(s)	6, 87, 116
Bst6I	CTCTTC	1 cut(s)	197
BstAFI	CTTAAG	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	14, 124
BstKTI	GATC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	3 cut(s)	6, 87, 116
BstNSI	RCATGY	2 cut(s)	32, 244
BstSCI	CCNGG	3 cut(s)	4, 85, 114
BstXI	CCANNNNNNTGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	14, 124
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	16
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	3 cut(s)	172, 304, 343
CviAII	CATG	2 cut(s)	29, 241
CviJI	RGCY	4 cut(s)	139, 249, 256, 331
CviKI_1	RGCY	4 cut(s)	139, 249, 256, 331
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco47I	GGWCC	3 cut(s)	172, 304, 343
Eco57I	CTGAAG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	3 cut(s)	4, 85, 114
EcoT22I	ATGCAT	1 cut(s)	34
FaeI	CATG	2 cut(s)	32, 244
FaiI	YATR	9 cut(s)	30, 71, 180, 193, 195, 197, 242, 323, 374
FatI	CATG	2 cut(s)	28, 240
FokI	GGATG	2 cut(s)	21, 131
FspBI	CTAG	2 cut(s)	257, 381
Hin1II	CATG	2 cut(s)	32, 244
HinfI	GANTC	1 cut(s)	55
HphI	GGTGA	1 cut(s)	27
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	3 cut(s)	151, 170, 381
HpyAV	CCTTC	2 cut(s)	148, 185
HpyCH4V	TGCA	5 cut(s)	32, 94, 244, 349, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	32, 244
Kzo9I	GATC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	109
LweI	GCATC	3 cut(s)	41, 75, 103
MaeI	CTAG	2 cut(s)	257, 381
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	16, 114
MluCI	AATT	1 cut(s)	337
MnlI	CCTC	3 cut(s)	18, 295, 317
Mph1103I	ATGCAT	1 cut(s)	34
MseI	TTAA	2 cut(s)	62, 317
MslI	CAYNNNNRTG	1 cut(s)	117
MspCI	CTTAAG	1 cut(s)	316
MspR9I	CCNGG	3 cut(s)	6, 87, 116
MvaI	CCWGG	3 cut(s)	6, 87, 116
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	1 cut(s)	158
NlaIII	CATG	2 cut(s)	32, 244
NsiI	ATGCAT	1 cut(s)	34
NspI	RCATGY	2 cut(s)	32, 244
PaeI	GCATGC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	3 cut(s)	4, 85, 114
PspGI	CCWGG	3 cut(s)	4, 85, 114
PspPI	GGNCC	3 cut(s)	172, 304, 343
PspPPI	RGGWCCY	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	62, 317
Sau3AI	GATC	1 cut(s)	158
Sau96I	GGNCC	3 cut(s)	172, 304, 343
ScrFI	CCNGG	3 cut(s)	6, 87, 116
SduI	GDGCHC	2 cut(s)	16, 114
SfaNI	GCATC	3 cut(s)	41, 75, 103
SinI	GGWCC	3 cut(s)	172, 304, 343
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	257, 381
StyD4I	CCNGG	3 cut(s)	4, 85, 114
TaqI	TCGA	1 cut(s)	43
TasI	AATT	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	62, 317
Tru9I	TTAA	2 cut(s)	62, 317
TscAI	CASTG	1 cut(s)	23
TspDTI	ATGAA	3 cut(s)	167, 180, 338
TspRI	CASTG	1 cut(s)	23
Vha464I	CTTAAG	1 cut(s)	316
VpaK11BI	GGWCC	3 cut(s)	172, 304, 343
XapI	RAATTY	1 cut(s)	337
XbaI	TCTAGA	1 cut(s)	380
XceI	RCATGY	2 cut(s)	32, 244
XspI	CTAG	2 cut(s)	257, 381
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.