Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

707702 .. 709686

Gene Structure 1985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG010800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCAAAGCTCAAAGCTAGGATGGAGTCATTTTATGGGGAAAGGCCTCCAATCCTTAAGTATGAAAGATCTTCAGAATTTGGAACAGCAACTTGATTTTGCTCTGAAGCACATGAGGTCTAGAAAGGTAATGCTGCTAGAGCATCACCACGCCTCAATTTCAAGCCCCACAAATGAGAAAAATGTAGCAGACTATGAAGAAATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

69

Amino Acids

7.98

Weight (kDa)

6.97

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	10 - 49	1.4e-11	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	2 cut(s)	56, 125
AflII	CTTAAG	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	162
AluBI	AGCT	2 cut(s)	9, 16
AluI	AGCT	2 cut(s)	9, 16
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	1 cut(s)	15
BfaI	CTAG	3 cut(s)	17, 120, 137
BfrI	CTTAAG	1 cut(s)	55
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
BmsI	GCATC	1 cut(s)	151
BseGI	GGATG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	120
BshFI	GGCC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	45
BspTI	CTTAAG	1 cut(s)	55
BssMI	GATC	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	26
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	26
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	4 cut(s)	9, 16, 45, 165
CviKI_1	RGCY	4 cut(s)	9, 16, 45, 165
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eco147I	AGGCCT	1 cut(s)	45
Eco57I	CTGAAG	2 cut(s)	56, 125
FaeI	CATG	1 cut(s)	115
FaiI	YATR	4 cut(s)	35, 62, 113, 195
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	3 cut(s)	17, 120, 137
GluI	GCNGC	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	115
HinfI	GANTC	1 cut(s)	25
HphI	GGTGA	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	75, 105
Hpy188III	TCNNGA	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
Hsp92II	CATG	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	67
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	3 cut(s)	17, 120, 137
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	2 cut(s)	62, 209
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	2 cut(s)	76, 156
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	56, 108, 163
MseI	TTAA	1 cut(s)	56
MspCI	CTTAAG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	34
SetI	ASST	4 cut(s)	11, 18, 119, 129
SfaNI	GCATC	1 cut(s)	151
SgeI	CNNG	7 cut(s)	29, 104, 124, 132, 149, 161, 174
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	2 cut(s)	76, 156
SseBI	AGGCCT	1 cut(s)	45
SspMI	CTAG	3 cut(s)	17, 120, 137
StuI	AGGCCT	1 cut(s)	45
TasI	AATT	2 cut(s)	76, 156
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	77, 210
Vha464I	CTTAAG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	76
XbaI	TCTAGA	1 cut(s)	119
XspI	CTAG	3 cut(s)	17, 120, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.