Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

3967455 .. 3973377

Gene Structure 5923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG059300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAAAGAATCCTGGAAAGGTATGAAAGATACTCATACGCAGAGCGGCAGCTTCTTGGAAATAATCACGATCACGACCACGATCAAGATCAATCAAATGGAAACTGGACTCTAGAACATGCAAAGCTCAAAGCTAGGGTGGAGGTTTTACAGAGAAATCAAAGTCATTTTATGGGGGAAGACCTACAATCCTTAAGTTTGAAAGAGCTTCAGAATTTGGAGCAGCAACTTGATTCTGCTCTGAAGCACATAAGGTCTAGAAAGAACCAACTTATGTACGAATCCATTTCGGTGCTCCAGAAGAAGGATAAGGTGTTGCAGGAGAAAAATAATTTGCTGACAAAAAAGGTCAAGGAGAAGGAGAAGGAGAGAGCAGTAGCCGGCAGTGCCCCACAAGCACAGGCACAGGCACAATGGGAGCAGCTGCAGAGGCACAGCTTGGACTCCTCCTCCAGCAGTGCCTTTCTACCTCAGGCTTTGCAGTCCTTGAATTTCAGAGGCTCATCTGGAGACTATGATCATGATGAAGAAACCCCACCTCCACCTCCGCCTCAACATCTAGCTGCCGCTGCTGCCAACAGTAATACGCTCCTGCCGCCTTGGATGCTCCGCCACCTTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

208

Amino Acids

23.93

Weight (kDa)

6.37

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	29 - 117	8.7e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	46
AciI	CCGC	5 cut(s)	46, 548, 567, 596, 610
AcsI	RAATTY	2 cut(s)	214, 490
AcuI	CTGAAG	2 cut(s)	194, 263
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflII	CTTAAG	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	202, 490
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	7 cut(s)	52, 127, 134, 208, 424, 438, 563
AluI	AGCT	7 cut(s)	52, 127, 134, 208, 424, 438, 563
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	504
ApeKI	GCWGC	7 cut(s)	49, 223, 421, 424, 563, 569, 572
ApoI	RAATTY	2 cut(s)	214, 490
AxyI	CCTNAGG	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	7 cut(s)	61, 235, 411, 433, 550, 556, 559
BciT130I	CCWGG	1 cut(s)	14
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	504
BfaI	CTAG	4 cut(s)	113, 135, 258, 560
BfmI	CTRYAG	1 cut(s)	425
BfrI	CTTAAG	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	3 cut(s)	281, 436, 528
BsaBI	GATNNNNATC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	599
BsaXI	ACNNNNNCTCC	4 cut(s)	434, 464, 523, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	110
Bse21I	CCTNAGG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	599
BseGI	GGATG	1 cut(s)	609
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	2 cut(s)	436, 439
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	7 cut(s)	61, 235, 411, 433, 550, 556, 559
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	504
Bsp1286I	GDGCHC	2 cut(s)	297, 391
Bsp143I	GATC	4 cut(s)	70, 82, 88, 517
BspACI	CCGC	5 cut(s)	46, 548, 567, 596, 610
BspCNI	CTCAG	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	520
BspMAI	CTGCAG	1 cut(s)	429
BspTI	CTTAAG	1 cut(s)	193
BsrBI	CCGCTC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	599
BssMI	GATC	4 cut(s)	70, 82, 88, 517
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	581
BstAFI	CTTAAG	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	609
BstKTI	GATC	4 cut(s)	73, 85, 91, 520
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	4 cut(s)	70, 82, 88, 517
BstMWI	GCNNNNNNNGC	7 cut(s)	386, 395, 430, 569, 572, 595, 604
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	425
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	7 cut(s)	61, 235, 411, 433, 550, 556, 559
BstV2I	GAAGAC	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	609
BtsI	GCAGTG	2 cut(s)	391, 463
BtsIMutI	CAGTG	2 cut(s)	391, 463
Cac8I	GCNNGC	1 cut(s)	382
CciI	TCATGA	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	2 cut(s)	119, 521
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	4 cut(s)	72, 84, 90, 519
DpnII	GATC	4 cut(s)	70, 82, 88, 517
EciI	GGCGGA	2 cut(s)	537, 599
Eco130I	CCWWGG	1 cut(s)	599
Eco57I	CTGAAG	2 cut(s)	194, 263
Eco81I	CCTNAGG	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	2 cut(s)	122, 524
FaiI	YATR	8 cut(s)	24, 37, 120, 173, 251, 275, 516, 522
FatI	CATG	2 cut(s)	118, 520
FbaI	TGATCA	1 cut(s)	517
FokI	GGATG	1 cut(s)	616
FspBI	CTAG	4 cut(s)	113, 135, 258, 560
GsuI	CTGGAG	3 cut(s)	281, 436, 528
HapII	CCGG	1 cut(s)	381
Hin1II	CATG	2 cut(s)	122, 524
HinfI	GANTC	5 cut(s)	9, 109, 233, 281, 443
HpaII	CCGG	1 cut(s)	381
Hpy188I	TCNGA	3 cut(s)	213, 243, 497
Hpy188III	TCNNGA	8 cut(s)	68, 74, 86, 113, 258, 298, 507, 521
HpyAV	CCTTC	3 cut(s)	298, 352, 358
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4V	TGCA	4 cut(s)	122, 319, 427, 481
HpyF10VI	GCNNNNNNNGC	7 cut(s)	386, 395, 430, 569, 572, 595, 604
HpyF3I	CTNAG	1 cut(s)	471
Hsp92II	CATG	2 cut(s)	122, 524
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	4 cut(s)	70, 82, 88, 517
LmnI	GCTCC	5 cut(s)	220, 300, 418, 594, 612
Lsp1109I	GCAGC	7 cut(s)	61, 235, 411, 433, 550, 556, 559
LweI	GCATC	1 cut(s)	594
MaeI	CTAG	4 cut(s)	113, 135, 258, 560
MalI	GATC	4 cut(s)	72, 84, 90, 519
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	4 cut(s)	70, 82, 88, 517
MboII	GAAGA	3 cut(s)	191, 313, 539
MhlI	GDGCHC	2 cut(s)	297, 391
MluCI	AATT	3 cut(s)	214, 331, 490
MlyI	GAGTC	2 cut(s)	103, 437
MnlI	CCTC	9 cut(s)	136, 423, 457, 460, 480, 491, 549, 555, 561
MroNI	GCCGGC	1 cut(s)	380
MseI	TTAA	2 cut(s)	194, 618
MslI	CAYNNNNRTG	2 cut(s)	290, 618
MspA1I	CMGCKG	2 cut(s)	424, 569
MspCI	CTTAAG	1 cut(s)	193
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	7 cut(s)	386, 395, 430, 569, 572, 595, 604
NaeI	GCCGGC	1 cut(s)	382
NdeII	GATC	4 cut(s)	70, 82, 88, 517
NgoMIV	GCCGGC	1 cut(s)	380
NlaIII	CATG	2 cut(s)	122, 524
NspI	RCATGY	1 cut(s)	122
PagI	TCATGA	1 cut(s)	520
PdiI	GCCGGC	1 cut(s)	382
PfeI	GAWTC	3 cut(s)	9, 233, 281
PfoI	TCCNGGA	1 cut(s)	12
PleI	GAGTC	2 cut(s)	103, 437
PpsI	GAGTC	2 cut(s)	103, 437
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	429
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	290, 618
SaqAI	TTAA	2 cut(s)	194, 618
Sau3AI	GATC	4 cut(s)	70, 82, 88, 517
SchI	GAGTC	2 cut(s)	103, 437
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	297, 391
SfaNI	GCATC	1 cut(s)	594
SfcI	CTRYAG	1 cut(s)	425
SmiMI	CAYNNNNRTG	2 cut(s)	290, 618
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	3 cut(s)	214, 331, 490
SsiI	CCGC	5 cut(s)	46, 548, 567, 596, 610
SspMI	CTAG	4 cut(s)	113, 135, 258, 560
StyD4I	CCNGG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	1 cut(s)	581
TasI	AATT	3 cut(s)	214, 331, 490
TauI	GCSGC	3 cut(s)	49, 569, 598
TfiI	GAWTC	3 cut(s)	9, 233, 281
Tru1I	TTAA	2 cut(s)	194, 618
Tru9I	TTAA	2 cut(s)	194, 618
TscAI	CASTG	2 cut(s)	391, 463
TseI	GCWGC	7 cut(s)	49, 223, 421, 424, 563, 569, 572
TspDTI	ATGAA	2 cut(s)	39, 540
TspRI	CASTG	2 cut(s)	391, 463
Vha464I	CTTAAG	1 cut(s)	193
XapI	RAATTY	2 cut(s)	214, 490
XbaI	TCTAGA	2 cut(s)	112, 257
XceI	RCATGY	1 cut(s)	122
XspI	CTAG	4 cut(s)	113, 135, 258, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.