Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

55798185 .. 55799999

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0389600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTTCGGGTTTTTGAAATCGCCTGCAAAGATTGCTAAGCAAAGCTCTGTAGACCCAGGATCTCTTGATTCAGAAACCCAATCTAATGAGGCTAAGATTACCCCAGCGAGACGAACTACTTCTGAACCCGTGCTCATCACCCCAGATTTTGGTAATGAGAAACCCGGTAAGCCTAGTACAAGAGGGACTTCTCCTGCTTCATACAAGAACGATTTTCATGACTCGGGAGGGCTAGAGAACCAGAGTGTGCAAGAGTTGGAGAAATATGCAGTATACAAGTCTGAGGAGACAACACAGAGTGTCAACAATTGCCTGAGGATTGCTGAGGACATCAAGGGGACTGCTACAACCACGCTTGACACGTTGCATCAGCAGGGTGATCAGATTACAAGGACACACATGGCGGCTGTCGATATGGATAAGGATTTGAGCAAGGGTGAGAAGCTTTTAAACGGACTTGGGGGCATTTTCTCAAAGCCTTGGAAGCCAAAGAAGACCAAGGAGCTTAAAGGCCCTGAATTGACAGCAGATTCAGCTACAACCAATAAACGTGCAAGTAAAGAGCAGAGGGAAAAGTTGGGTTTATCTCCTGCGCCCAAAGGAAGCCGGTCAGCTCCTCAGACACCCCTTCCTGAAGGATCAAGTGCCATTCAGCAAATCGAGGCTGAGAAGGCAAAGCAAGATGATGCTCTCTCAGATCTAAGTAATATTTTGGGGGATTTGAAGGGAATGGCTGTGGACATGGGAAGTGAACTCGAGAGGCAAAACAAAGCTATGGATCACCTCTCTGAGGATGTGGATGAGCTCAACTCTCGAATGAAAGGTGCCAATCAACGAACTCGACGCCTGCTAGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

286

Amino Acids

31.08

Weight (kDa)

6.48

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccI	GTMKAC	2 cut(s)	51, 273
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	3 cut(s)	67, 646, 786
AcuI	CTGAAG	1 cut(s)	654
AcyI	GRCGYC	1 cut(s)	844
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	2 cut(s)	149, 790
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	16, 724
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	7 cut(s)	45, 445, 505, 536, 614, 773, 805
AluI	AGCT	7 cut(s)	45, 445, 505, 536, 614, 773, 805
Alw21I	GWGCWC	2 cut(s)	135, 807
Alw26I	GTCTC	2 cut(s)	103, 281
AlwI	GGATC	3 cut(s)	67, 646, 786
Ama87I	CYCGRG	2 cut(s)	223, 755
AoxI	GGCC	2 cut(s)	511, 853
Asp700I	GAANNNNTTC	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	1 cut(s)	512
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	4 cut(s)	130, 389, 449, 773
AvaI	CYCGRG	2 cut(s)	223, 755
AxyI	CCTNAGG	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	824
BanII	GRGCYC	1 cut(s)	807
BbsI	GAAGAC	1 cut(s)	500
Bbv12I	GWGCWC	2 cut(s)	135, 807
BbvCI	CCTCAGC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	103, 281
BfaI	CTAG	3 cut(s)	174, 233, 851
BfmI	CTRYAG	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	852
BglII	AGATCT	1 cut(s)	697
BisI	GCNGC	1 cut(s)	405
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	2 cut(s)	57, 165
BmeT110I	CYCGRG	2 cut(s)	223, 755
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	826
BmrFI	CCNGG	2 cut(s)	57, 165
BmsI	GCATC	2 cut(s)	376, 676
BpiI	GAAGAC	1 cut(s)	500
BplI	GAGNNNNNCTC	2 cut(s)	794, 826
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	844
BsaJI	CCNNGG	3 cut(s)	55, 479, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 790
Bse118I	RCCGGY	1 cut(s)	606
Bse1I	ACTGG	1 cut(s)	856
Bse21I	CCTNAGG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	3 cut(s)	55, 479, 498
BseGI	GGATG	2 cut(s)	799, 805
BseLI	CCNNNNNNNGG	2 cut(s)	149, 790
BseMII	CTCAG	7 cut(s)	273, 305, 315, 632, 657, 708, 780
BseNI	ACTGG	1 cut(s)	856
BseRI	GAGGAG	2 cut(s)	299, 606
BseYI	CCCAGC	1 cut(s)	103
BshFI	GGCC	2 cut(s)	513, 855
BshNI	GGYRCC	1 cut(s)	824
BsiHKAI	GWGCWC	2 cut(s)	135, 807
BsiHKCI	CYCGRG	2 cut(s)	223, 755
BsiSI	CCGG	2 cut(s)	165, 607
BslFI	GGGAC	2 cut(s)	199, 352
BslI	CCNNNNNNNGG	2 cut(s)	149, 790
BsmAI	GTCTC	2 cut(s)	103, 281
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	199, 352
BsnI	GGCC	2 cut(s)	513, 855
BsoBI	CYCGRG	2 cut(s)	223, 755
Bsp1286I	GDGCHC	2 cut(s)	135, 807
Bsp143I	GATC	5 cut(s)	59, 379, 638, 697, 778
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	2 cut(s)	513, 855
BspCNI	CTCAG	7 cut(s)	274, 306, 316, 631, 658, 707, 781
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	826
BspPI	GGATC	3 cut(s)	67, 646, 786
BspT107I	GGYRCC	1 cut(s)	824
BsrFI	RCCGGY	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	856
BssAI	RCCGGY	1 cut(s)	606
BssECI	CCNNGG	3 cut(s)	55, 479, 498
BssMI	GATC	5 cut(s)	59, 379, 638, 697, 778
BssNAI	GTATAC	1 cut(s)	274
BssNI	GRCGYC	1 cut(s)	844
BssT1I	CCWWGG	2 cut(s)	479, 498
Bst1107I	GTATAC	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	844
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	24, 848
BstENI	CCTNNNNNAGG	1 cut(s)	788
BstF5I	GGATG	2 cut(s)	799, 805
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	5 cut(s)	62, 382, 641, 700, 781
BstMAI	GTCTC	2 cut(s)	103, 281
BstMBI	GATC	5 cut(s)	59, 379, 638, 697, 778
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 484, 533, 671, 852
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	55, 163
BstSFI	CTRYAG	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	2 cut(s)	59, 697
BstYI	RGATCY	2 cut(s)	59, 697
BstZ17I	GTATAC	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	513, 855
BtsCI	GGATG	2 cut(s)	799, 805
Cac8I	GCNNGC	2 cut(s)	24, 848
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	1 cut(s)	595
Cfr10I	RCCGGY	1 cut(s)	606
Cfr13I	GGNCC	1 cut(s)	512
CseI	GACGC	1 cut(s)	852
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	3 cut(s)	218, 400, 742
CviQI	GTAC	1 cut(s)	177
DpnI	GATC	5 cut(s)	61, 381, 640, 699, 780
DpnII	GATC	5 cut(s)	59, 379, 638, 697, 778
DraI	TTTAAA	1 cut(s)	450
DraIII	CACNNNGTG	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	805
Eco130I	CCWWGG	2 cut(s)	479, 498
Eco24I	GRGCYC	1 cut(s)	807
Eco53kI	GAGCTC	1 cut(s)	805
Eco57I	CTGAAG	1 cut(s)	654
Eco81I	CCTNAGG	1 cut(s)	314
Eco88I	CYCGRG	2 cut(s)	223, 755
EcoICRI	GAGCTC	1 cut(s)	805
EcoNI	CCTNNNNNAGG	1 cut(s)	788
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	479, 498
EcoT38I	GRGCYC	1 cut(s)	807
ErhI	CCWWGG	2 cut(s)	479, 498
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	3 cut(s)	221, 403, 745
FaiI	YATR	8 cut(s)	202, 219, 267, 274, 401, 416, 743, 776
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	2 cut(s)	199, 352
FatI	CATG	3 cut(s)	217, 399, 741
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	2 cut(s)	51, 273
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	2 cut(s)	806, 812
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	3 cut(s)	174, 233, 851
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	1 cut(s)	405
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	513, 855
HapII	CCGG	2 cut(s)	165, 607
HgaI	GACGC	1 cut(s)	852
HhaI	GCGC	1 cut(s)	595
Hin1I	GRCGYC	1 cut(s)	844
Hin1II	CATG	3 cut(s)	221, 403, 745
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	3 cut(s)	68, 221, 530
HpaII	CCGG	2 cut(s)	165, 607
HphI	GGTGA	4 cut(s)	130, 389, 449, 773
Hpy166II	GTNNAC	5 cut(s)	52, 274, 304, 739, 752
Hpy188I	TCNGA	7 cut(s)	73, 124, 283, 384, 621, 697, 790
Hpy188III	TCNNGA	6 cut(s)	65, 218, 225, 632, 757, 813
Hpy8I	GTNNAC	5 cut(s)	52, 274, 304, 739, 752
Hpy99I	CGWCG	1 cut(s)	846
HpyAV	CCTTC	4 cut(s)	629, 638, 664, 718
HpyCH4IV	ACGT	2 cut(s)	362, 550
HpyCH4V	TGCA	5 cut(s)	26, 250, 269, 367, 554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 484, 533, 671, 852
HpySE526I	ACGT	2 cut(s)	362, 550
Hsp92I	GRCGYC	1 cut(s)	844
Hsp92II	CATG	3 cut(s)	221, 403, 745
HspAI	GCGC	1 cut(s)	593
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	59, 379, 638, 697, 778
LmnI	GCTCC	2 cut(s)	502, 619
LweI	GCATC	2 cut(s)	376, 676
MaeI	CTAG	3 cut(s)	174, 233, 851
MaeII	ACGT	2 cut(s)	362, 550
MalI	GATC	5 cut(s)	61, 381, 640, 699, 780
MboI	GATC	5 cut(s)	59, 379, 638, 697, 778
MboII	GAAGA	1 cut(s)	505
MfeI	CAATTG	1 cut(s)	307
MflI	RGATCY	2 cut(s)	59, 697
MhlI	GDGCHC	2 cut(s)	135, 807
MluCI	AATT	2 cut(s)	307, 518
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	237
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	2 cut(s)	449, 507
MspI	CCGG	2 cut(s)	165, 607
MspR9I	CCNGG	2 cut(s)	57, 165
MunI	CAATTG	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	5 cut(s)	32, 484, 533, 671, 852
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	5 cut(s)	59, 379, 638, 697, 778
NlaIII	CATG	3 cut(s)	221, 403, 745
NlaIV	GGNNCC	1 cut(s)	826
PaeR7I	CTCGAG	1 cut(s)	755
PagI	TCATGA	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	68, 530
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	807
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	1 cut(s)	512
PsuI	RGATCY	2 cut(s)	59, 697
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	807
SaqAI	TTAA	2 cut(s)	449, 507
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	5 cut(s)	59, 379, 638, 697, 778
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	57, 165
SduI	GDGCHC	2 cut(s)	135, 807
SfaNI	GCATC	2 cut(s)	376, 676
SfcI	CTRYAG	1 cut(s)	48
Sfr274I	CTCGAG	1 cut(s)	755
SlaI	CTCGAG	1 cut(s)	755
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	2 cut(s)	307, 518
SsiI	CCGC	1 cut(s)	404
SspI	AATATT	1 cut(s)	709
SspMI	CTAG	3 cut(s)	174, 233, 851
SstI	GAGCTC	1 cut(s)	807
StyD4I	CCNGG	2 cut(s)	55, 163
StyI	CCWWGG	2 cut(s)	479, 498
TaiI	ACGT	2 cut(s)	365, 553
TaqI	TCGA	5 cut(s)	411, 660, 756, 814, 841
TasI	AATT	2 cut(s)	307, 518
TatI	WGTACW	1 cut(s)	176
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	68, 530
Tru1I	TTAA	2 cut(s)	449, 507
Tru9I	TTAA	2 cut(s)	449, 507
TspDTI	ATGAA	3 cut(s)	189, 206, 833
TspGWI	ACGGA	1 cut(s)	468
Van91I	CCANNNNNTGG	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	788
XhoI	CTCGAG	1 cut(s)	755
XmiI	GTMKAC	2 cut(s)	51, 273
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	3 cut(s)	174, 233, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.