Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

9043317 .. 9044698

Gene Structure 1382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47119

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCTGATCGATGATGGGGAGGAGGTGGTGAGGGAGTCGCAGTGCCCGCATTGTGGGAGAATGTTTTGTGCTCAGTGCAAGGTTGCTTGGCATGTTGGGATGGATTGCGGCGAGTTTCAGAAGCTGAGTGTGGATGAGAGAGGGAATGAAGATGTTATGTTGAGGAACCTGGCCCAGAGCCAGAACTGGAGGAGGTGTCCCAGCTGCATGTTCTATGTTGAAAAGTCTGTTGGTTGCTCCTACATGAAATGCAGGTCTGGATATGCATTCTGTTACAATTGTGGACTACAAGCTGTCAGTCATACCTGTCAAAGCTGTCATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

108

Amino Acids

12.34

Weight (kDa)

6.85

Isoelectric Point (pI)

62.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	12 - 36	8.9e-07	IBR domain, a half RING-finger domain
IBR	PF01485	53 - 106	1.6e-06	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	243
AciI	CCGC	2 cut(s)	47, 108
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	168
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
AluBI	AGCT	4 cut(s)	124, 204, 293, 315
AluI	AGCT	4 cut(s)	124, 204, 293, 315
Alw21I	GWGCWC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	2 cut(s)	8, 94
BciT130I	CCWGG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	243
BisI	GCNGC	2 cut(s)	109, 205
BlsI	GCNGC	2 cut(s)	110, 206
Bme1390I	CCNGG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	208
Bsa29I	ATCGAT	1 cut(s)	9
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 181, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	170
BseCI	ATCGAT	1 cut(s)	9
BseGI	GGATG	2 cut(s)	105, 139
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	86, 116
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	2 cut(s)	35, 205
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	191
BseYI	CCCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	173
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	47, 73
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	47, 108
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	2 cut(s)	85, 117
BspDI	ATCGAT	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	167
BspMI	ACCTGC	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	72, 125
BstF5I	GGATG	2 cut(s)	105, 139
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	2 cut(s)	95, 211
BstSCI	CCNGG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	191
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	173
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	105, 139
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 80
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	47
CaiI	CAGNNNCTG	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	172
ClaI	ATCGAT	1 cut(s)	9
CviAII	CATG	3 cut(s)	92, 208, 244
CviJI	RGCY	6 cut(s)	124, 173, 180, 204, 293, 315
CviKI_1	RGCY	6 cut(s)	124, 173, 180, 204, 293, 315
DdeI	CTNAG	2 cut(s)	72, 125
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	268
FaeI	CATG	3 cut(s)	95, 211, 247
FaiI	YATR	8 cut(s)	93, 158, 209, 216, 245, 264, 303, 321
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	3 cut(s)	91, 207, 243
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	109, 205
FokI	GGATG	2 cut(s)	112, 146
Fsp4HI	GCNGC	2 cut(s)	109, 205
GluI	GCNGC	2 cut(s)	109, 205
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	173
Hin1II	CATG	3 cut(s)	95, 211, 247
HinfI	GANTC	1 cut(s)	35
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	258
Hpy8I	GTNNAC	1 cut(s)	284
HpyCH4V	TGCA	4 cut(s)	78, 207, 252, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	2 cut(s)	72, 125
Hsp92II	CATG	3 cut(s)	95, 211, 247
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	9 cut(s)	155, 172, 182, 188, 194, 214, 238, 243, 319
Lsp1109I	GCAGC	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	161
MfeI	CAATTG	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	47, 73
MluCI	AATT	1 cut(s)	277
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	7 cut(s)	13, 16, 24, 134, 156, 183, 186
Mph1103I	ATGCAT	1 cut(s)	268
MspA1I	CMGCKG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	3 cut(s)	95, 211, 247
NlaIV	GGNNCC	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	2 cut(s)	95, 211
PctI	GAATGC	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	110, 206
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	204
SatI	GCNGC	2 cut(s)	109, 205
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	2 cut(s)	47, 73
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	2 cut(s)	47, 108
StyD4I	CCNGG	1 cut(s)	168
TaqI	TCGA	1 cut(s)	9
TasI	AATT	1 cut(s)	277
TauI	GCSGC	1 cut(s)	111
TscAI	CASTG	2 cut(s)	47, 80
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	2 cut(s)	162, 260
TspRI	CASTG	2 cut(s)	47, 80
XceI	RCATGY	2 cut(s)	95, 211
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.