Rmu_sc0005612.1_g000011

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005612.1
Physical Location & Seq
Reverse (-)
43856 .. 46041
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005612.1_g000011.1.cds

Sequence Viewer

Length: 993 bp
atgacaagcaagaaagccaaagtggagcacaaagcttctgagactcatattgagattgtgaactatgaagaggatgcccttttctccacaacaatttcttttaagggctcagatgacggcatatcaactcctcgaaccactcctgttaacttcatttatgacaatgaagaatttgatgagtctaggaaaaagcgaagaaaaactcaagataaaaaatcttcaaatttcgatacttccaattctaaggaaccggaaacttttgtttgtgaaatttgtgttgatgacaagtctgccagcgagtcgtttggcgtccaaaattgcagccattcttactgtagagactgcataaagaattacgtggcatccaagcttcaagagaacattacaagcattaattgccctgtccctgattgcaaagggtcactagaccccgagtattgtcgtccaatgctgccctctgaagtggttgagaggtgggaaagcgctctacgtgagactatgattgttgggtctcagagattttactgtcccttcaaggactgctcgataatgttgattgaggatgggacacaggttgtagcagagtcggagtgccctaattgtaagagaatgttctgtgcgcagtgtaaggttccttggcacaccgagattgaatgcgaagagtttcagaagctgaatgagaatgagcgggagaaggaggatatcatgctgaggaaccttgctcggaagcggcattggagtaggtgtccaaagtccttcaaatcccagaaaccaccgccgcccaccttgaagatctcaactccaggagtccagaaccggcggccccgccccaagaaccggcctgaaaatatccgaaccggccaccggaaatatctttatccttctgcccggttcgatactttcctccctatcaactgccaccaaaattcaccagcagctgcagcagcacctcaattcactgcagacaaaaaatcatcatcggaaccggcctag

Protein Analysis

330

Amino Acids

37.82

Weight (kDa)

8.05

Isoelectric Point (pI)

61.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 621
AccBSI CCGCTC 1 cut(s) 688
AciI CCGC 6 cut(s) 688, 730, 776, 779, 820, 826
AcoI YGGCCR 1 cut(s) 859
AcsI RAATTY 4 cut(s) 170, 223, 270, 925
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 309
AfeI AGCGCT 1 cut(s) 484
AfiI CCNNNNNNNGG 2 cut(s) 837, 864
AgsI TTSAA 6 cut(s) 222, 374, 535, 653, 760, 790
AjnI CCWGG 1 cut(s) 802
AluBI AGCT 4 cut(s) 35, 370, 673, 938
AluI AGCT 4 cut(s) 35, 370, 673, 938
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 4 cut(s) 35, 333, 488, 516
AlwNI CAGNNNCTG 2 cut(s) 673, 938
Ama87I CYCGRG 1 cut(s) 431
Aor51HI AGCGCT 1 cut(s) 484
AoxI GGCC 4 cut(s) 821, 839, 859, 987
ApeKI GCWGC 6 cut(s) 321, 451, 935, 938, 941, 944
ApoI RAATTY 4 cut(s) 170, 223, 270, 925
AseI ATTAAT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 663
AspLEI GCGC 2 cut(s) 485, 622
AspS9I GGNCC 1 cut(s) 822
AsuC2I CCSGG 1 cut(s) 889
AsuHPI GGTGA 1 cut(s) 921
AvaI CYCGRG 1 cut(s) 431
BaeGI GKGCMC 1 cut(s) 596
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 710
BbvI GCAGC 6 cut(s) 333, 438, 925, 947, 953, 956
BccI CCATC 1 cut(s) 557
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 804
BcnI CCSGG 1 cut(s) 889
BcoDI GTCTC 4 cut(s) 35, 333, 488, 516
BfaI CTAG 3 cut(s) 183, 425, 991
BfmI CTRYAG 3 cut(s) 334, 939, 960
BfoI RGCGCY 1 cut(s) 486
BglII AGATCT 1 cut(s) 792
BisI GCNGC 9 cut(s) 322, 452, 731, 779, 821, 936, 939, 942, 945
BlsI GCNGC 9 cut(s) 323, 453, 732, 780, 822, 937, 940, 943, 946
Bme1390I CCNGG 2 cut(s) 804, 889
BmeT110I CYCGRG 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 822
BmiI GGNNCC 5 cut(s) 249, 633, 716, 824, 984
BmrFI CCNGG 2 cut(s) 804, 889
BmsI GCATC 2 cut(s) 64, 371
BpmI CTGGAG 1 cut(s) 786
Bpu10I CCTNAGC 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 889
BsaAI YACGTR 2 cut(s) 358, 491
BsaHI GRCGYC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 635
BsaWI WCCGGW 2 cut(s) 250, 864
BsaXI ACNNNNNCTCC 2 cut(s) 730, 760
Bsc4I CCNNNNNNNGG 2 cut(s) 837, 864
Bse118I RCCGGY 4 cut(s) 816, 837, 857, 985
BseBI CCWGG 1 cut(s) 804
BseDI CCNNGG 1 cut(s) 635
BseGI GGATG 3 cut(s) 79, 362, 568
BseLI CCNNNNNNNGG 2 cut(s) 837, 864
BseMII CTCAG 4 cut(s) 30, 123, 527, 701
BseRI GAGGAG 1 cut(s) 120
BseSI GKGCMC 1 cut(s) 596
BseXI GCAGC 6 cut(s) 333, 438, 925, 947, 953, 956
BshFI GGCC 4 cut(s) 823, 841, 861, 989
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 7 cut(s) 251, 817, 838, 858, 865, 889, 986
BslFI GGGAC 3 cut(s) 389, 513, 580
BslI CCNNNNNNNGG 2 cut(s) 837, 864
BsmAI GTCTC 4 cut(s) 35, 333, 488, 516
BsmFI GGGAC 3 cut(s) 389, 513, 580
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 4 cut(s) 823, 841, 861, 989
Bso31I GGTCTC 1 cut(s) 516
BsoBI CYCGRG 1 cut(s) 431
Bsp1286I GDGCHC 3 cut(s) 30, 110, 596
Bsp143I GATC 1 cut(s) 792
BspACI CCGC 6 cut(s) 688, 730, 776, 779, 820, 826
BspANI GGCC 4 cut(s) 823, 841, 861, 989
BspCNI CTCAG 4 cut(s) 31, 122, 526, 702
BspLI GGNNCC 5 cut(s) 249, 633, 716, 824, 984
BspMAI CTGCAG 2 cut(s) 943, 964
BspTNI GGTCTC 1 cut(s) 516
BsrBI CCGCTC 1 cut(s) 688
BsrFI RCCGGY 4 cut(s) 816, 837, 857, 985
BssAI RCCGGY 4 cut(s) 816, 837, 857, 985
BssECI CCNNGG 1 cut(s) 635
BssMI GATC 1 cut(s) 792
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 635
Bst2UI CCWGG 1 cut(s) 804
Bst4CI ACNGT 2 cut(s) 335, 527
Bst6I CTCTTC 2 cut(s) 63, 654
BstACI GRCGYC 1 cut(s) 309
BstAPI GCANNNNNTGC 1 cut(s) 396
BstBAI YACGTR 2 cut(s) 358, 491
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 5 cut(s) 39, 109, 243, 513, 710
BstF5I GGATG 3 cut(s) 79, 362, 568
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 2 cut(s) 485, 622
BstKTI GATC 1 cut(s) 795
BstMAI GTCTC 4 cut(s) 35, 333, 488, 516
BstMBI GATC 1 cut(s) 792
BstMWI GCNNNNNNNGC 3 cut(s) 396, 941, 944
BstNI CCWGG 1 cut(s) 804
BstSCI CCNGG 2 cut(s) 802, 887
BstSFI CTRYAG 3 cut(s) 334, 939, 960
BstSLI GKGCMC 1 cut(s) 596
BstV1I GCAGC 6 cut(s) 333, 438, 925, 947, 953, 956
BstX2I RGATCY 1 cut(s) 792
BstYI RGATCY 1 cut(s) 792
BsuRI GGCC 4 cut(s) 823, 841, 861, 989
BtsCI GGATG 3 cut(s) 79, 362, 568
BtsI GCAGTG 2 cut(s) 629, 957
BtsIMutI CAGTG 2 cut(s) 629, 957
Cac8I GCNNGC 1 cut(s) 295
CaiI CAGNNNCTG 2 cut(s) 673, 938
CfoI GCGC 2 cut(s) 485, 622
Cfr10I RCCGGY 4 cut(s) 816, 837, 857, 985
Cfr13I GGNCC 1 cut(s) 822
CseI GACGC 1 cut(s) 298
CviAII CATG 1 cut(s) 706
DdeI CTNAG 5 cut(s) 39, 109, 243, 513, 710
DpnI GATC 1 cut(s) 794
DpnII GATC 1 cut(s) 792
EaeI YGGCCR 1 cut(s) 859
Eam1104I CTCTTC 2 cut(s) 63, 654
EarI CTCTTC 2 cut(s) 63, 654
Eco130I CCWWGG 1 cut(s) 635
Eco24I GRGCYC 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 516
Eco32I GATATC 1 cut(s) 703
Eco47III AGCGCT 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 802
EcoRV GATATC 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 635
EcoT38I GRGCYC 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 635
FaeI CATG 1 cut(s) 709
FaiI YATR 7 cut(s) 48, 66, 122, 159, 347, 500, 707
FaqI GGGAC 3 cut(s) 389, 513, 580
FatI CATG 1 cut(s) 705
FauI CCCGC 2 cut(s) 681, 833
Fnu4HI GCNGC 9 cut(s) 322, 452, 731, 779, 821, 936, 939, 942, 945
FokI GGATG 3 cut(s) 86, 349, 575
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 9 cut(s) 322, 452, 731, 779, 821, 936, 939, 942, 945
FspBI CTAG 3 cut(s) 183, 425, 991
FspI TGCGCA 1 cut(s) 621
GlaI GCGC 2 cut(s) 484, 621
GluI GCNGC 9 cut(s) 322, 452, 731, 779, 821, 936, 939, 942, 945
GsuI CTGGAG 1 cut(s) 786
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 4 cut(s) 823, 841, 861, 989
HapII CCGG 7 cut(s) 251, 817, 838, 858, 865, 889, 986
HgaI GACGC 1 cut(s) 298
HhaI GCGC 2 cut(s) 485, 622
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 1 cut(s) 709
Hin6I GCGC 2 cut(s) 483, 620
HinP1I GCGC 2 cut(s) 483, 620
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HindIII AAGCTT 2 cut(s) 33, 368
HinfI GANTC 5 cut(s) 43, 179, 299, 584, 807
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 7 cut(s) 251, 817, 838, 858, 865, 889, 986
HphI GGTGA 1 cut(s) 921
Hpy166II GTNNAC 2 cut(s) 61, 148
Hpy188I TCNGA 9 cut(s) 40, 112, 460, 516, 589, 669, 726, 854, 982
Hpy188III TCNNGA 3 cut(s) 206, 374, 811
Hpy8I GTNNAC 2 cut(s) 61, 148
HpyAV CCTTC 4 cut(s) 541, 688, 766, 891
HpyCH4III ACNGT 2 cut(s) 335, 527
HpyCH4IV ACGT 2 cut(s) 357, 490
HpyCH4V TGCA 5 cut(s) 321, 345, 414, 941, 962
HpyF10VI GCNNNNNNNGC 3 cut(s) 396, 941, 944
HpyF3I CTNAG 5 cut(s) 39, 109, 243, 513, 710
HpySE526I ACGT 2 cut(s) 357, 490
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 1 cut(s) 709
HspAI GCGC 2 cut(s) 483, 620
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 792
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 6 cut(s) 333, 438, 925, 947, 953, 956
LweI GCATC 2 cut(s) 64, 371
MaeI CTAG 3 cut(s) 183, 425, 991
MaeII ACGT 2 cut(s) 357, 490
MaeIII GTNAC 1 cut(s) 420
MalI GATC 1 cut(s) 794
MbiI CCGCTC 1 cut(s) 688
MboI GATC 1 cut(s) 792
MboII GAAGA 6 cut(s) 80, 179, 207, 210, 671, 802
MflI RGATCY 1 cut(s) 792
MhlI GDGCHC 3 cut(s) 30, 110, 596
MlyI GAGTC 5 cut(s) 37, 188, 308, 593, 816
MmeI TCCRAC 1 cut(s) 567
MnlI CCTC 9 cut(s) 64, 141, 465, 466, 553, 691, 705, 914, 960
MroXI GAANNNNTTC 1 cut(s) 663
MseI TTAA 3 cut(s) 102, 147, 393
MspA1I CMGCKG 1 cut(s) 938
MspI CCGG 7 cut(s) 251, 817, 838, 858, 865, 889, 986
MspR9I CCNGG 2 cut(s) 804, 889
Mva1269I GAATGC 1 cut(s) 659
MvaI CCWGG 1 cut(s) 804
MwoI GCNNNNNNNGC 3 cut(s) 396, 941, 944
NciI CCSGG 1 cut(s) 889
NdeII GATC 1 cut(s) 792
NlaIII CATG 1 cut(s) 709
NlaIV GGNNCC 5 cut(s) 249, 633, 716, 824, 984
NmuCI GTSAC 1 cut(s) 420
NsbI TGCGCA 1 cut(s) 621
PctI GAATGC 1 cut(s) 659
PdmI GAANNNNTTC 1 cut(s) 663
PfoI TCCNGGA 1 cut(s) 802
PkrI GCNGC 9 cut(s) 323, 453, 732, 780, 822, 937, 940, 943, 946
PleI GAGTC 5 cut(s) 37, 187, 307, 592, 815
PpsI GAGTC 5 cut(s) 37, 187, 307, 592, 815
Ppu21I YACGTR 2 cut(s) 358, 491
PshBI ATTAAT 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 802
PspGI CCWGG 1 cut(s) 802
PspN4I GGNNCC 5 cut(s) 249, 633, 716, 824, 984
PspPI GGNCC 1 cut(s) 822
PstI CTGCAG 2 cut(s) 943, 964
PstNI CAGNNNCTG 2 cut(s) 673, 938
PsuI RGATCY 1 cut(s) 792
PvuII CAGCTG 1 cut(s) 938
SaqAI TTAA 3 cut(s) 102, 147, 393
SatI GCNGC 9 cut(s) 322, 452, 731, 779, 821, 936, 939, 942, 945
Sau3AI GATC 1 cut(s) 792
Sau96I GGNCC 1 cut(s) 822
SchI GAGTC 5 cut(s) 37, 188, 308, 593, 816
ScrFI CCNGG 2 cut(s) 804, 889
SduI GDGCHC 3 cut(s) 30, 110, 596
SfaNI GCATC 2 cut(s) 64, 371
SfcI CTRYAG 3 cut(s) 334, 939, 960
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SsiI CCGC 6 cut(s) 688, 730, 776, 779, 820, 826
SspMI CTAG 3 cut(s) 183, 425, 991
StyD4I CCNGG 2 cut(s) 802, 887
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 2 cut(s) 335, 527
TaiI ACGT 2 cut(s) 360, 493
TaqI TCGA 4 cut(s) 133, 228, 545, 894
TauI GCSGC 3 cut(s) 733, 781, 823
Tru1I TTAA 3 cut(s) 102, 147, 393
Tru9I TTAA 3 cut(s) 102, 147, 393
TscAI CASTG 2 cut(s) 629, 964
TseFI GTSAC 1 cut(s) 420
TseI GCWGC 6 cut(s) 321, 451, 935, 938, 941, 944
Tsp45I GTSAC 1 cut(s) 420
TspDTI ATGAA 3 cut(s) 81, 142, 180
TspRI CASTG 2 cut(s) 629, 964
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 4 cut(s) 170, 223, 270, 925
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 3 cut(s) 183, 425, 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.