Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

2019854 .. 2020556

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG028500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTGATCAACGATGGGCCAGAGGTAGTGAGGGAATCAGAGTGCCTTAATTGTAAAAGATTGTTTTTTGCGCAGTGTAGGATTCCTTGGCACGCCGGGATTACTTGTGCCGAGTTTAAGAGGCTGAATAAGGATGCTATCATTACGGAAAAACTTGCTTACAAGAAGCACTGGAGAAGGTGCCCAAGGTGTGGGATCTACGTAGAAAGATCAGGAGGCTGCGCAACAATGAAATGCTGGTGCGAGACTTATTTCAACTTCCATTGTGGACGAATGGGTTGTCCTTTTTGTGGAAAACATAGACAGAAAAATTATACTATACGAAGAAGCTCATTCATGAAGGAGTACAGAAGGATTCAGCGGGACCGAGGGGAACCCTATAATCTAGCTACTGCTAAACTCGCTATTGAGAAATGGAGATCCATGTCTCGTTCTGAAAAAAAGCCCTATGCGAACCCAGAGATGGAACCGACTGAAATTTACCCGGTGCGATCGAAGATGGCGAGTAAAGAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

172

Amino Acids

20.32

Weight (kDa)

9.57

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	72, 223
AccB1I	GGYRCC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	191
AciI	CCGC	1 cut(s)	361
AclWI	GGATC	2 cut(s)	203, 414
AcsI	RAATTY	1 cut(s)	477
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	3 cut(s)	191, 290, 463
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	2 cut(s)	330, 389
AluI	AGCT	2 cut(s)	330, 389
Alw26I	GTCTC	2 cut(s)	239, 432
AlwI	GGATC	2 cut(s)	203, 414
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	477
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
AspLEI	GCGC	2 cut(s)	73, 224
AspS9I	GGNCC	2 cut(s)	17, 364
AsuC2I	CCSGG	2 cut(s)	97, 485
AvaII	GGWCC	1 cut(s)	364
BaeGI	GKGCMC	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	3 cut(s)	8, 457, 493
BclI	TGATCA	1 cut(s)	6
BcnI	CCSGG	2 cut(s)	97, 485
BcoDI	GTCTC	2 cut(s)	239, 432
BfaI	CTAG	1 cut(s)	386
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	97, 485
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	2 cut(s)	17, 364
BmiI	GGNNCC	4 cut(s)	182, 365, 375, 468
BmrFI	CCNGG	2 cut(s)	97, 485
BmsI	GCATC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	193
BpuMI	CCSGG	2 cut(s)	97, 485
BsaAI	YACGTR	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	86, 185, 367
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 290, 463
Bse1I	ACTGG	1 cut(s)	176
BseDI	CCNNGG	3 cut(s)	86, 185, 367
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	3 cut(s)	191, 290, 463
BseNI	ACTGG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	206
Bsh1285I	CGRYCG	1 cut(s)	494
BshFI	GGCC	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	494
BsiSI	CCGG	2 cut(s)	96, 485
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	3 cut(s)	191, 290, 463
BsmAI	GTCTC	2 cut(s)	239, 432
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	5 cut(s)	6, 195, 209, 419, 491
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	4 cut(s)	182, 365, 375, 468
BspPI	GGATC	2 cut(s)	203, 414
BspT107I	GGYRCC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	86, 185, 367
BssMI	GATC	5 cut(s)	6, 195, 209, 419, 491
BssT1I	CCWWGG	2 cut(s)	86, 185
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	139
BstHHI	GCGC	2 cut(s)	73, 224
BstKTI	GATC	5 cut(s)	9, 198, 212, 422, 494
BstMAI	GTCTC	2 cut(s)	239, 432
BstMBI	GATC	5 cut(s)	6, 195, 209, 419, 491
BstMCI	CGRYCG	1 cut(s)	494
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	95, 483
BstSLI	GKGCMC	1 cut(s)	185
BstSNI	TACGTA	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	2 cut(s)	195, 419
BstYI	RGATCY	2 cut(s)	195, 419
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 169
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	2 cut(s)	73, 224
Cfr13I	GGNCC	2 cut(s)	17, 364
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	2 cut(s)	337, 424
CviJI	RGCY	6 cut(s)	19, 124, 219, 330, 389, 445
CviKI_1	RGCY	6 cut(s)	19, 124, 219, 330, 389, 445
CviQI	GTAC	1 cut(s)	346
DpnI	GATC	5 cut(s)	8, 197, 211, 421, 493
DpnII	GATC	5 cut(s)	6, 195, 209, 419, 491
Eco105I	TACGTA	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	86, 185
Eco47I	GGWCC	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	86, 185
ErhI	CCWWGG	2 cut(s)	86, 185
FaeI	CATG	2 cut(s)	340, 427
FaiI	YATR	7 cut(s)	300, 315, 320, 338, 381, 425, 450
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	2 cut(s)	336, 423
FauI	CCCGC	1 cut(s)	354
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	220
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	1 cut(s)	386
FspI	TGCGCA	2 cut(s)	72, 223
GlaI	GCGC	2 cut(s)	72, 223
GluI	GCNGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	2 cut(s)	96, 485
HhaI	GCGC	2 cut(s)	73, 224
Hin1II	CATG	2 cut(s)	340, 427
Hin6I	GCGC	2 cut(s)	71, 222
HinP1I	GCGC	2 cut(s)	71, 222
HinfI	GANTC	3 cut(s)	35, 82, 355
HpaII	CCGG	2 cut(s)	96, 485
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	2 cut(s)	40, 436
Hpy188III	TCNNGA	2 cut(s)	213, 337
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	4 cut(s)	171, 334, 345, 506
HpyCH4IV	ACGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	340, 427
HspAI	GCGC	2 cut(s)	71, 222
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	5 cut(s)	6, 195, 209, 419, 491
LpnPI	CCDG	7 cut(s)	33, 109, 157, 198, 223, 471, 498
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	201
MalI	GATC	5 cut(s)	8, 197, 211, 421, 493
MboI	GATC	5 cut(s)	6, 195, 209, 419, 491
MboII	GAAGA	2 cut(s)	336, 508
MflI	RGATCY	2 cut(s)	195, 419
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	3 cut(s)	49, 310, 477
MnlI	CCTC	5 cut(s)	16, 24, 114, 209, 362
MseI	TTAA	2 cut(s)	48, 117
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	2 cut(s)	96, 485
MspR9I	CCNGG	2 cut(s)	97, 485
MwoI	GCNNNNNNNGC	1 cut(s)	401
NciI	CCSGG	2 cut(s)	97, 485
NdeII	GATC	5 cut(s)	6, 195, 209, 419, 491
NlaIII	CATG	2 cut(s)	340, 427
NlaIV	GGNNCC	4 cut(s)	182, 365, 375, 468
NmeAIII	GCCGAG	1 cut(s)	136
NsbI	TGCGCA	2 cut(s)	72, 223
PagI	TCATGA	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PfeI	GAWTC	3 cut(s)	35, 82, 355
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	221
Ple19I	CGATCG	1 cut(s)	494
Ppu21I	YACGTR	1 cut(s)	202
PspN4I	GGNNCC	4 cut(s)	182, 365, 375, 468
PspPI	GGNCC	2 cut(s)	17, 364
PsuI	RGATCY	2 cut(s)	195, 419
PvuI	CGATCG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	2 cut(s)	48, 117
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	5 cut(s)	6, 195, 209, 419, 491
Sau96I	GGNCC	2 cut(s)	17, 364
ScrFI	CCNGG	2 cut(s)	97, 485
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	6 cut(s)	27, 182, 191, 204, 332, 391
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	364
SnaBI	TACGTA	1 cut(s)	202
Sse9I	AATT	3 cut(s)	49, 310, 477
SsiI	CCGC	1 cut(s)	361
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	95, 483
StyI	CCWWGG	2 cut(s)	86, 185
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	494
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	3 cut(s)	49, 310, 477
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	3 cut(s)	35, 82, 355
Tru1I	TTAA	2 cut(s)	48, 117
Tru9I	TTAA	2 cut(s)	48, 117
TscAI	CASTG	2 cut(s)	80, 176
TseI	GCWGC	1 cut(s)	219
TspDTI	ATGAA	3 cut(s)	245, 325, 353
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	2 cut(s)	80, 176
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	364
XapI	RAATTY	1 cut(s)	477
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.