Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

8284856 .. 8286873

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016620

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGAAGCAAGAAAGCGAAGAAAACCAAACTGGAGGAGAAAGTGTCTCAATCGCACTTTGAGATTGTGAACATTGAAGACGATGACCTTTGCTTCACACCAAAACGCTCGAGCAAGTTCAATTCTATCTCAGTCGATGAGAACAGAAACCTTCAATCAATCAAGGAATCTATTAAGGCCTCTCTTCTTAAGTCCACAGGTAATTTCATCGACCTTTCTGATGAAACTCATTCGGAAGATGACGAAGAGCTTAGAGTTCTTAGGTTTCAACCCCCGTACACTGCATTCGGAAAGCGAAAGAAACCCTTTAGTAGTCCTTCTGTATCCGAAGTTGGGGAATCTTCCAATTCCAATTCCAAAAAAGACCCATCATTTTTATGTGAAATTTGCTCCGAGCCAAAGTCTAGGAGTGAGTCATTTGGCATAAAAGACTGTAGTCATTCATATTGTACTGAGTGCATCATCAAATACGTGGCATCCAAGCTTCAAGACAATGTTACATTCATTAAGTGCCCTGTTCCTGATTGCAAAGGGTTACTGGAGCCGGAGTATTGCCGTCCGATTCTGCCCCCTGAGGTGTTTGAGAGGTGGGGAAGTGCATTGTGTGAGGCGGTGATTCTCGGGTCTGAGAAGTTTTACTGCCCCTTTAAGGATTGCTCCGGAATGTTGATTGATGATGGAAAAGAGGTTGTACGGGAATCGGAGTGCCCTAATTGTTGGAGAATGTTCTGTGTGCAATGTAAGGCTCCTTGGCATGCTGGGATTGACTGCGCAGAGTTTCAGAAGTTGAATAAGGATGAGAGGGAAAAAGAAGATATTATGTTGAGAAAACTTGCACAGAACAAAGAGTGGAAGAGATGTCCCAAGTGTAGGTTCTATGTGGAAAAATCAGAAGGCTGCATGTTCATGAAGTGTAGTCTTAGTTGGGACCCCATGCTCAAGTACATGACTGTCCTCAAAGACTCCTCTGACTTTTGTAGCTTCTTGTCTCTAAATCTGCTCAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

337

Amino Acids

38.57

Weight (kDa)

6.87

Isoelectric Point (pI)

58.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	207 - 257	9.2e-10	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	772
AccIII	TCCGGA	1 cut(s)	659
AciI	CCGC	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	384
AfaI	GTAC	4 cut(s)	278, 451, 693, 944
AfiI	CCNNNNNNNGG	3 cut(s)	333, 649, 870
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	6 cut(s)	77, 121, 155, 269, 488, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	857, 889
AluBI	AGCT	3 cut(s)	250, 484, 981
AluI	AGCT	3 cut(s)	250, 484, 981
Alw26I	GTCTC	2 cut(s)	51, 993
Ama87I	CYCGRG	2 cut(s)	109, 620
Aor13HI	TCCGGA	1 cut(s)	659
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	897
ApoI	RAATTY	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	1 cut(s)	928
AsuHPI	GGTGA	1 cut(s)	625
AvaI	CYCGRG	2 cut(s)	109, 620
AvaII	GGWCC	1 cut(s)	928
AxyI	CCTNAGG	1 cut(s)	573
BaeGI	GKGCMC	2 cut(s)	515, 710
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	884
BccI	CCATC	2 cut(s)	376, 671
BceAI	ACGGC	1 cut(s)	540
BciVI	GTATCC	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	51, 993
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	433
BfrI	CTTAAG	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	1 cut(s)	898
BlsI	GCNGC	1 cut(s)	899
Bme18I	GGWCC	1 cut(s)	928
BmeT110I	CYCGRG	2 cut(s)	109, 620
BmgT120I	GGNCC	1 cut(s)	928
BmiI	GGNNCC	4 cut(s)	543, 747, 929, 930
BmsI	GCATC	2 cut(s)	468, 485
BoxI	GACNNNNGTC	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	2 cut(s)	53, 560
BpuEI	CTTGAG	1 cut(s)	923
BsaAI	YACGTR	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	749
BsaWI	WCCGGW	1 cut(s)	659
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 533, 563
Bsc4I	CCNNNNNNNGG	3 cut(s)	333, 649, 870
Bse1I	ACTGG	2 cut(s)	36, 543
Bse21I	CCTNAGG	1 cut(s)	573
Bse3DI	GCAATG	1 cut(s)	743
BseAI	TCCGGA	1 cut(s)	659
BseDI	CCNNGG	1 cut(s)	749
BseGI	GGATG	2 cut(s)	476, 802
BseLI	CCNNNNNNNGG	3 cut(s)	333, 649, 870
BseMI	GCAATG	1 cut(s)	743
BseMII	CTCAG	4 cut(s)	144, 444, 564, 618
BseNI	ACTGG	2 cut(s)	36, 543
BseRI	GAGGAG	2 cut(s)	50, 955
BseSI	GKGCMC	2 cut(s)	515, 710
BseXI	GCAGC	1 cut(s)	884
BseYI	CCCAGC	1 cut(s)	758
BshFI	GGCC	1 cut(s)	179
BsiHKCI	CYCGRG	2 cut(s)	109, 620
BsiSI	CCGG	2 cut(s)	545, 660
BslFI	GGGAC	2 cut(s)	846, 941
BslI	CCNNNNNNNGG	3 cut(s)	333, 649, 870
BsmAI	GTCTC	2 cut(s)	51, 993
BsmFI	GGGAC	2 cut(s)	846, 941
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	179
BsoBI	CYCGRG	2 cut(s)	109, 620
Bsp1286I	GDGCHC	2 cut(s)	515, 710
Bsp13I	TCCGGA	1 cut(s)	659
BspACI	CCGC	1 cut(s)	611
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	4 cut(s)	143, 445, 565, 619
BspEI	TCCGGA	1 cut(s)	659
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	4 cut(s)	543, 747, 929, 930
BspQI	GCTCTTC	1 cut(s)	240
BspTI	CTTAAG	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	743
BsrI	ACTGG	2 cut(s)	36, 543
BssECI	CCNNGG	1 cut(s)	749
BssT1I	CCWWGG	1 cut(s)	749
Bst4CI	ACNGT	2 cut(s)	434, 952
Bst6I	CTCTTC	3 cut(s)	189, 240, 848
BstAFI	CTTAAG	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	756
BstDEI	CTNAG	7 cut(s)	130, 251, 260, 453, 573, 627, 920
BstF5I	GGATG	2 cut(s)	476, 802
BstHHI	GCGC	1 cut(s)	773
BstMAI	GTCTC	2 cut(s)	51, 993
BstNSI	RCATGY	2 cut(s)	758, 904
BstPAI	GACNNNNGTC	1 cut(s)	435
BstSFI	CTRYAG	1 cut(s)	433
BstSLI	GKGCMC	2 cut(s)	515, 710
BstV1I	GCAGC	1 cut(s)	884
BstV2I	GAAGAC	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	2 cut(s)	476, 802
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	756
CciI	TCATGA	1 cut(s)	906
CfoI	GCGC	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	928
Csp6I	GTAC	4 cut(s)	277, 450, 692, 943
CviAII	CATG	5 cut(s)	755, 901, 907, 934, 946
CviJI	RGCY	8 cut(s)	179, 250, 397, 484, 544, 746, 897, 981
CviKI_1	RGCY	8 cut(s)	179, 250, 397, 484, 544, 746, 897, 981
CviQI	GTAC	4 cut(s)	277, 450, 692, 943
DdeI	CTNAG	7 cut(s)	130, 251, 260, 453, 573, 627, 920
Eam1104I	CTCTTC	3 cut(s)	189, 240, 848
EarI	CTCTTC	3 cut(s)	189, 240, 848
Eco130I	CCWWGG	1 cut(s)	749
Eco147I	AGGCCT	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	928
Eco81I	CCTNAGG	1 cut(s)	573
Eco88I	CYCGRG	2 cut(s)	109, 620
EcoO109I	RGGNCCY	1 cut(s)	928
EcoT14I	CCWWGG	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	5 cut(s)	758, 904, 910, 937, 949
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	2 cut(s)	846, 941
FatI	CATG	5 cut(s)	754, 900, 906, 933, 945
Fnu4HI	GCNGC	1 cut(s)	898
FokI	GGATG	2 cut(s)	463, 809
Fsp4HI	GCNGC	1 cut(s)	898
FspBI	CTAG	1 cut(s)	405
FspI	TGCGCA	1 cut(s)	772
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	1 cut(s)	898
GsaI	CCCAGC	1 cut(s)	762
GsuI	CTGGAG	2 cut(s)	53, 560
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	2 cut(s)	545, 660
HhaI	GCGC	1 cut(s)	773
Hin1II	CATG	5 cut(s)	758, 904, 910, 937, 949
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	7 cut(s)	167, 338, 413, 562, 616, 698, 962
HpaII	CCGG	2 cut(s)	545, 660
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	3 cut(s)	70, 195, 279
Hpy188III	TCNNGA	4 cut(s)	488, 521, 660, 907
Hpy8I	GTNNAC	3 cut(s)	70, 195, 279
HpyAV	CCTTC	3 cut(s)	161, 327, 887
HpyCH4III	ACNGT	2 cut(s)	434, 952
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	7 cut(s)	284, 459, 528, 599, 736, 836, 900
HpyF3I	CTNAG	7 cut(s)	130, 251, 260, 453, 573, 627, 920
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	5 cut(s)	758, 904, 910, 937, 949
HspAI	GCGC	1 cut(s)	771
KflI	GGGWCCC	1 cut(s)	928
Kpn2I	TCCGGA	1 cut(s)	659
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	4 cut(s)	395, 541, 662, 751
LpnPI	CCDG	9 cut(s)	17, 183, 524, 528, 534, 558, 585, 673, 744
Lsp1109I	GCAGC	1 cut(s)	884
LweI	GCATC	2 cut(s)	468, 485
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	2 cut(s)	496, 534
MboII	GAAGA	8 cut(s)	31, 89, 176, 248, 257, 333, 824, 865
MhlI	GDGCHC	2 cut(s)	515, 710
MluCI	AATT	6 cut(s)	121, 202, 346, 352, 384, 712
MlyI	GAGTC	2 cut(s)	422, 956
MmeI	TCCRAC	1 cut(s)	698
MnlI	CCTC	9 cut(s)	28, 190, 568, 579, 601, 679, 795, 965, 976
MroI	TCCGGA	1 cut(s)	659
MseI	TTAA	4 cut(s)	174, 189, 507, 648
MslI	CAYNNNNRTG	2 cut(s)	376, 905
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	2 cut(s)	545, 660
Mva1269I	GAATGC	1 cut(s)	284
NlaIII	CATG	5 cut(s)	758, 904, 910, 937, 949
NlaIV	GGNNCC	4 cut(s)	543, 747, 929, 930
NsbI	TGCGCA	1 cut(s)	772
NspI	RCATGY	2 cut(s)	758, 904
PaeI	GCATGC	1 cut(s)	758
PaeR7I	CTCGAG	1 cut(s)	109
PagI	TCATGA	1 cut(s)	906
PceI	AGGCCT	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	240
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	5 cut(s)	167, 338, 562, 616, 698
PkrI	GCNGC	1 cut(s)	899
PleI	GAGTC	2 cut(s)	421, 956
PpsI	GAGTC	2 cut(s)	421, 956
Ppu21I	YACGTR	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	928
PshAI	GACNNNNGTC	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	928
PspFI	CCCAGC	1 cut(s)	758
PspN4I	GGNNCC	4 cut(s)	543, 747, 929, 930
PspPI	GGNCC	1 cut(s)	928
PspPPI	RGGWCCY	1 cut(s)	928
PspXI	VCTCGAGB	1 cut(s)	109
RsaI	GTAC	4 cut(s)	278, 451, 693, 944
RsaNI	GTAC	4 cut(s)	277, 450, 692, 943
RseI	CAYNNNNRTG	2 cut(s)	376, 905
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	174, 189, 507, 648
SatI	GCNGC	1 cut(s)	898
Sau96I	GGNCC	1 cut(s)	928
SchI	GAGTC	2 cut(s)	422, 956
SduI	GDGCHC	2 cut(s)	515, 710
SfaNI	GCATC	2 cut(s)	468, 485
SfcI	CTRYAG	1 cut(s)	433
Sfr274I	CTCGAG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	928
SlaI	CTCGAG	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	376, 905
SmlI	CTYRAG	3 cut(s)	109, 188, 938
SmoI	CTYRAG	3 cut(s)	109, 188, 938
SphI	GCATGC	1 cut(s)	758
Sse9I	AATT	6 cut(s)	121, 202, 346, 352, 384, 712
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	1 cut(s)	611
SspMI	CTAG	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	2 cut(s)	434, 952
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	3 cut(s)	110, 135, 210
TasI	AATT	6 cut(s)	121, 202, 346, 352, 384, 712
TatI	WGTACW	2 cut(s)	449, 942
TfiI	GAWTC	5 cut(s)	167, 338, 562, 616, 698
Tru1I	TTAA	4 cut(s)	174, 189, 507, 648
Tru9I	TTAA	4 cut(s)	174, 189, 507, 648
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	1 cut(s)	897
TspDTI	ATGAA	6 cut(s)	196, 237, 432, 493, 895, 923
TspRI	CASTG	1 cut(s)	286
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	928
XapI	RAATTY	1 cut(s)	384
XceI	RCATGY	2 cut(s)	758, 904
XhoI	CTCGAG	1 cut(s)	109
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.