Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

949726 .. 950278

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG012400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAGAAACTTGCTTACAAGAAGCACTGGAGAAAGTGCCCAACGTGTGGGATCTATGTGGAAAGATCAGGAGGCTGCACAACAATACCATGCAGGTGCGGGACTTATTTTGACTTCCATTGTGGACGACTCGGTTGTCCTTTCTGTGGAAAACGCAGAAAGAATACCATGGGCTACTGCGTATTCATGAAGGAATACAGAAGGATTCAGCGGGACCGGGGGGAACCCTATAGTCAAGCTACTGCTAAACTTGCTACTGAGAAATGGAGATCCATGTCTCGTTCTGAAAAAAAGCCCTATGAGAACCCAGAGATGAAACCGACTAGAATCATCCGGGTGCGATCGAAGATGTCGAGTAAAGAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

122

Amino Acids

14.37

Weight (kDa)

9.87

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	84
AasI	GACNNNNNNGTC	1 cut(s)	135
Acc36I	ACCTGC	1 cut(s)	84
AccB7I	CCANNNNNTGG	1 cut(s)	47
AciI	CCGC	2 cut(s)	99, 211
AclWI	GGATC	2 cut(s)	59, 264
AfiI	CCNNNNNNNGG	2 cut(s)	47, 146
AflIII	ACRYGT	1 cut(s)	44
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	2 cut(s)	59, 264
ApeKI	GCWGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	2 cut(s)	218, 335
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	62
BcnI	CCSGG	2 cut(s)	218, 335
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	229
BfuAI	ACCTGC	1 cut(s)	84
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme1390I	CCNGG	2 cut(s)	218, 335
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	215, 225
BmrFI	CCNGG	2 cut(s)	218, 335
BpmI	CTGGAG	1 cut(s)	49
BpuMI	CCSGG	2 cut(s)	218, 335
BsaJI	CCNNGG	2 cut(s)	168, 217
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 146
Bse1I	ACTGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	168, 217
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	47, 146
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	61
Bsh1285I	CGRYCG	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	344
BsiSI	CCGG	2 cut(s)	217, 334
BslFI	GGGAC	2 cut(s)	115, 227
BslI	CCNNNNNNNGG	2 cut(s)	47, 146
BsmAI	GTCTC	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	115, 227
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	51, 65, 269, 341
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	2 cut(s)	99, 211
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	215, 225
BspMI	ACCTGC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	59, 264
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	168, 217
BssMI	GATC	4 cut(s)	51, 65, 269, 341
BssT1I	CCWWGG	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	4 cut(s)	54, 68, 272, 344
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	4 cut(s)	51, 65, 269, 341
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	216, 333
BstSFI	CTRYAG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	51, 269
BstYI	RGATCY	2 cut(s)	51, 269
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	25
BveI	ACCTGC	1 cut(s)	84
CciI	TCATGA	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	214
CviAII	CATG	4 cut(s)	90, 169, 187, 274
CviJI	RGCY	5 cut(s)	75, 174, 239, 295, 366
CviKI_1	RGCY	5 cut(s)	75, 174, 239, 295, 366
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	4 cut(s)	53, 67, 271, 343
DpnII	GATC	4 cut(s)	51, 65, 269, 341
DrdI	GACNNNNNNGTC	1 cut(s)	135
DseDI	GACNNNNNNGTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	4 cut(s)	93, 172, 190, 277
FaiI	YATR	7 cut(s)	57, 91, 170, 188, 231, 275, 300
FaqI	GGGAC	2 cut(s)	115, 227
FatI	CATG	4 cut(s)	89, 168, 186, 273
FauI	CCCGC	2 cut(s)	92, 204
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	49
HapII	CCGG	2 cut(s)	217, 334
Hin1II	CATG	4 cut(s)	93, 172, 190, 277
HinfI	GANTC	3 cut(s)	129, 205, 327
HpaII	CCGG	2 cut(s)	217, 334
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	69, 187
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	184, 195, 356
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	78, 93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	4 cut(s)	93, 172, 190, 277
Kzo9I	GATC	4 cut(s)	51, 65, 269, 341
LpnPI	CCDG	6 cut(s)	13, 54, 79, 230, 321, 347
Lsp1109I	GCAGC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	44
MalI	GATC	4 cut(s)	53, 67, 271, 343
MboI	GATC	4 cut(s)	51, 65, 269, 341
MboII	GAAGA	1 cut(s)	358
MflI	RGATCY	2 cut(s)	51, 269
MhlI	GDGCHC	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	123
MnlI	CCTC	1 cut(s)	65
MslI	CAYNNNNRTG	2 cut(s)	94, 335
MspA1I	CMGCKG	1 cut(s)	211
MspI	CCGG	2 cut(s)	217, 334
MspR9I	CCNGG	2 cut(s)	218, 335
MwoI	GCNNNNNNNGC	1 cut(s)	251
NciI	CCSGG	2 cut(s)	218, 335
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	4 cut(s)	51, 65, 269, 341
NlaIII	CATG	4 cut(s)	93, 172, 190, 277
NlaIV	GGNNCC	2 cut(s)	215, 225
PagI	TCATGA	1 cut(s)	186
PaqCI	CACCTGC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	205, 327
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	77
Ple19I	CGATCG	1 cut(s)	344
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	215, 225
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	51, 269
PvuI	CGATCG	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	94, 335
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	4 cut(s)	51, 65, 269, 341
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	218, 335
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	3 cut(s)	47, 98, 241
SfcI	CTRYAG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	2 cut(s)	94, 335
SsiI	CCGC	2 cut(s)	99, 211
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	216, 333
StyI	CCWWGG	1 cut(s)	168
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	2 cut(s)	344, 353
TfiI	GAWTC	2 cut(s)	205, 327
TscAI	CASTG	1 cut(s)	32
TseI	GCWGC	1 cut(s)	75
TspDTI	ATGAA	3 cut(s)	175, 203, 329
TspRI	CASTG	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	214
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.