Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

83691632 .. 83694228

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGACAAGCAAGAAAGCCAAAGTGGAGCACAAAGCTTCTGAGACTCATATTGAGATTGTGAACTATGAAGAGGATGCCCTTTTCTCCACAACAATTTCTCGTAAGGGCTCAGATGACGGCATATCAACTCCTCGAACTACCCCTGTTAACTTCATTTATGACAATGAAGAATTTGATGAGTCTAGGAAAAAGCGAAGAAAAATTCAAGATAAAAAATCTTCAAATTTCGATACTTCCAATTCTAAGGAACCGGAAACTTTTGTTTGTGAAATTTGTGTAGATGACAAGTCTGCCAGCGAGTCGTTTGGTGTCCAACATTGCAGCCATTCTTACTGTAGAGACTGCATAAAGAATTACGTGGCATCCAAGCTTCAAGAGAACATTACAAGCATTAATTGCCCTGTCCCTGATTGCAAAGGGTCACTAGACCCCGAGTATTGTCGTCCAATCCTGCCCTCTGAAGTGGTTGAGAGGTGGGAAAGCGCTCTACGTGAGACTATGATTGTTGGGTCTCAGAGATTTTACTGTCCCTTCAAGGATTGCTCGATAATGTTGATTGAGGATGAGACACAGGTTGTAGCAGAGTCGGAGTGCCCTAATTGTAAGAGAATGTTCTGTGCGCAGTGTAAGGTTCCTTGGCACACCGAGATTGAATGCGAAGAGTTTCAGAAGCTGAATGAGAATGAGCGGGAGAAGGAGGATGTCATGCTGAGGAACCTTGCTCGGAAGCGGCATTGGAGTAGGTGTCCAAAGTGTATGTTCTATGTGGAAAGAACGCATGGTTGCGATTCCATACGGTGCTGGTGCGGAACTTGTTTCTCCTACGGTACCGAACAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

280

Amino Acids

32.5

Weight (kDa)

5.54

Isoelectric Point (pI)

61.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	160 - 219	3.1e-10	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	621
Acc65I	GGTACC	1 cut(s)	827
AccB1I	GGYRCC	1 cut(s)	827
AccBSI	CCGCTC	1 cut(s)	688
AciI	CCGC	3 cut(s)	688, 730, 807
AcsI	RAATTY	5 cut(s)	170, 201, 223, 270, 837
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	1 cut(s)	829
AfeI	AGCGCT	1 cut(s)	484
AgsI	TTSAA	5 cut(s)	206, 222, 374, 535, 653
AluBI	AGCT	3 cut(s)	35, 370, 673
AluI	AGCT	3 cut(s)	35, 370, 673
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	5 cut(s)	35, 333, 488, 516, 560
AlwNI	CAGNNNCTG	1 cut(s)	673
Ama87I	CYCGRG	1 cut(s)	431
Aor51HI	AGCGCT	1 cut(s)	484
ApeKI	GCWGC	1 cut(s)	321
ApoI	RAATTY	5 cut(s)	170, 201, 223, 270, 837
AseI	ATTAAT	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	663
Asp718I	GGTACC	1 cut(s)	827
AspLEI	GCGC	2 cut(s)	485, 622
AvaI	CYCGRG	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	827
BanII	GRGCYC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	710
BbvI	GCAGC	1 cut(s)	333
BceAI	ACGGC	1 cut(s)	133
BcoDI	GTCTC	5 cut(s)	35, 333, 488, 516, 560
BfaI	CTAG	2 cut(s)	183, 425
BfmI	CTRYAG	1 cut(s)	334
BfoI	RGCGCY	1 cut(s)	486
BisI	GCNGC	2 cut(s)	322, 731
BlsI	GCNGC	2 cut(s)	323, 732
BmeT110I	CYCGRG	1 cut(s)	431
BmiI	GGNNCC	4 cut(s)	249, 633, 716, 829
BmsI	GCATC	2 cut(s)	64, 371
Bpu10I	CCTNAGC	1 cut(s)	710
BsaAI	YACGTR	2 cut(s)	358, 491
BsaI	GGTCTC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	635
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bse3DI	GCAATG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	635
BseGI	GGATG	4 cut(s)	79, 362, 568, 706
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	4 cut(s)	30, 123, 527, 701
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	596
BseXI	GCAGC	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	827
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	2 cut(s)	389, 513
BsmAI	GTCTC	5 cut(s)	35, 333, 488, 516, 560
BsmFI	GGGAC	2 cut(s)	389, 513
BsmI	GAATGC	1 cut(s)	659
Bso31I	GGTCTC	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	3 cut(s)	30, 110, 596
BspACI	CCGC	3 cut(s)	688, 730, 807
BspCNI	CTCAG	4 cut(s)	31, 122, 526, 702
BspLI	GGNNCC	4 cut(s)	249, 633, 716, 829
BspT107I	GGYRCC	1 cut(s)	827
BspTNI	GGTCTC	1 cut(s)	516
BsrBI	CCGCTC	1 cut(s)	688
BsrDI	GCAATG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	635
BssT1I	CCWWGG	1 cut(s)	635
Bst4CI	ACNGT	4 cut(s)	335, 527, 798, 827
Bst6I	CTCTTC	2 cut(s)	63, 654
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstBAI	YACGTR	2 cut(s)	358, 491
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	5 cut(s)	39, 109, 243, 513, 710
BstF5I	GGATG	4 cut(s)	79, 362, 568, 706
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	2 cut(s)	485, 622
BstMAI	GTCTC	5 cut(s)	35, 333, 488, 516, 560
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstSFI	CTRYAG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	596
BstV1I	GCAGC	1 cut(s)	333
BtsCI	GGATG	4 cut(s)	79, 362, 568, 706
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	1 cut(s)	629
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	673
CfoI	GCGC	2 cut(s)	485, 622
Csp6I	GTAC	1 cut(s)	828
CviAII	CATG	2 cut(s)	706, 779
CviJI	RGCY	6 cut(s)	17, 35, 108, 324, 370, 673
CviKI_1	RGCY	6 cut(s)	17, 35, 108, 324, 370, 673
CviQI	GTAC	1 cut(s)	828
DdeI	CTNAG	5 cut(s)	39, 109, 243, 513, 710
Eam1104I	CTCTTC	2 cut(s)	63, 654
EarI	CTCTTC	2 cut(s)	63, 654
Eco130I	CCWWGG	1 cut(s)	635
Eco24I	GRGCYC	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	516
Eco47III	AGCGCT	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	635
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	635
FaeI	CATG	2 cut(s)	709, 782
FaqI	GGGAC	2 cut(s)	389, 513
FatI	CATG	2 cut(s)	705, 778
FauI	CCCGC	1 cut(s)	681
Fnu4HI	GCNGC	2 cut(s)	322, 731
FokI	GGATG	4 cut(s)	86, 349, 575, 713
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	322, 731
FspBI	CTAG	2 cut(s)	183, 425
FspI	TGCGCA	1 cut(s)	621
GlaI	GCGC	2 cut(s)	484, 621
GluI	GCNGC	2 cut(s)	322, 731
HaeII	RGCGCY	1 cut(s)	486
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	2 cut(s)	485, 622
Hin1II	CATG	2 cut(s)	709, 782
Hin6I	GCGC	2 cut(s)	483, 620
HinP1I	GCGC	2 cut(s)	483, 620
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	2 cut(s)	33, 368
HinfI	GANTC	5 cut(s)	43, 179, 299, 584, 788
HpaI	GTTAAC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	61, 148
Hpy188I	TCNGA	7 cut(s)	40, 112, 460, 516, 589, 669, 726
Hpy188III	TCNNGA	2 cut(s)	206, 374
Hpy8I	GTNNAC	2 cut(s)	61, 148
HpyAV	CCTTC	2 cut(s)	541, 688
HpyCH4III	ACNGT	4 cut(s)	335, 527, 798, 827
HpyCH4IV	ACGT	2 cut(s)	357, 490
HpyCH4V	TGCA	3 cut(s)	321, 345, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	5 cut(s)	39, 109, 243, 513, 710
HpySE526I	ACGT	2 cut(s)	357, 490
Hsp92II	CATG	2 cut(s)	709, 782
HspAI	GCGC	2 cut(s)	483, 620
KpnI	GGTACC	1 cut(s)	831
KspAI	GTTAAC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	8 cut(s)	156, 264, 307, 414, 420, 464, 557, 787
Lsp1109I	GCAGC	1 cut(s)	333
LweI	GCATC	2 cut(s)	64, 371
MaeI	CTAG	2 cut(s)	183, 425
MaeII	ACGT	2 cut(s)	357, 490
MaeIII	GTNAC	1 cut(s)	420
MbiI	CCGCTC	1 cut(s)	688
MboII	GAAGA	5 cut(s)	80, 179, 207, 210, 671
MhlI	GDGCHC	3 cut(s)	30, 110, 596
MlyI	GAGTC	4 cut(s)	37, 188, 308, 593
MmeI	TCCRAC	2 cut(s)	337, 567
MnlI	CCTC	7 cut(s)	64, 141, 465, 466, 553, 691, 705
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	3 cut(s)	147, 393, 841
MspI	CCGG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	659
MwoI	GCNNNNNNNGC	1 cut(s)	396
NlaIII	CATG	2 cut(s)	709, 782
NlaIV	GGNNCC	4 cut(s)	249, 633, 716, 829
NmuCI	GTSAC	1 cut(s)	420
NsbI	TGCGCA	1 cut(s)	621
PctI	GAATGC	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	788
PkrI	GCNGC	2 cut(s)	323, 732
PleI	GAGTC	4 cut(s)	37, 187, 307, 592
PpsI	GAGTC	4 cut(s)	37, 187, 307, 592
Ppu21I	YACGTR	2 cut(s)	358, 491
PshBI	ATTAAT	1 cut(s)	393
PspN4I	GGNNCC	4 cut(s)	249, 633, 716, 829
PstNI	CAGNNNCTG	1 cut(s)	673
RsaI	GTAC	1 cut(s)	829
RsaNI	GTAC	1 cut(s)	828
SaqAI	TTAA	3 cut(s)	147, 393, 841
SatI	GCNGC	2 cut(s)	322, 731
SchI	GAGTC	4 cut(s)	37, 188, 308, 593
SduI	GDGCHC	3 cut(s)	30, 110, 596
SfaNI	GCATC	2 cut(s)	64, 371
SfcI	CTRYAG	1 cut(s)	334
SsiI	CCGC	3 cut(s)	688, 730, 807
SspMI	CTAG	2 cut(s)	183, 425
StyI	CCWWGG	1 cut(s)	635
TaaI	ACNGT	4 cut(s)	335, 527, 798, 827
TaiI	ACGT	2 cut(s)	360, 493
TaqI	TCGA	3 cut(s)	133, 228, 545
TauI	GCSGC	1 cut(s)	733
TfiI	GAWTC	1 cut(s)	788
Tru1I	TTAA	3 cut(s)	147, 393, 841
Tru9I	TTAA	3 cut(s)	147, 393, 841
TscAI	CASTG	1 cut(s)	629
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	3 cut(s)	81, 142, 180
TspRI	CASTG	1 cut(s)	629
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	5 cut(s)	170, 201, 223, 270, 837
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	2 cut(s)	183, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.