Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

956487 .. 957122

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG012500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTGAACATGGAGCACGATGCCTTGTCGCATAAGAGATCGAGCAAGTCATTGAATTCTGAATCATCTAACAGGAGCGGTGTTGAGGAGCAACCAAATACATTCTGGACACAGTGCCCCTTTTGTTGCGCAATGTCTGAATACCGCAGAGACATTCTGGATCGCTTGGTCAATTGTCAGATATGCCGTCAAGCATTTGGAGCTCATGAAATGAAGAAAGGCGATCAATCTCTCAGGAATAAATTTAGCGATACCCTGAAATCTGCCTTGAGTCCCGTTAAACCATGTAACTTCATCGATCTCTCTGCTGAAACCCTAAACTATTACGATAGTGATGAAGAGGTTAGGATTCTTAGGTTCAAACCGTCCAATATCCCTTTCAGGAAAAGCAAGCGAATAAAAACCTCAAACGAGGGTTCTTGTTCTACTTCCAAAGCCCCATCTTTTGTTTGTGAAATTTGTGTGGAGACCAAGCCGGCACACGAATCGTTTGGTATCAAAAATTGCAGCCATGTTTATTGTACCGATTGTGTGGTCAAATACGTGGACTCAAAGCTCCAAGAAAATATAACAAGCATTGGGTGCCTTGTACCCAGTGGCGGATCTAGAAATTTTGACCACATAGGGCAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

211

Amino Acids

23.77

Weight (kDa)

8.2

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	582
AccBSI	CCGCTC	1 cut(s)	78
AciI	CCGC	3 cut(s)	78, 145, 600
AclWI	GGATC	2 cut(s)	168, 610
AcsI	RAATTY	5 cut(s)	55, 242, 456, 610, 630
AfaI	GTAC	2 cut(s)	523, 591
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	2 cut(s)	55, 361
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	2 cut(s)	203, 556
AluI	AGCT	2 cut(s)	203, 556
Alw21I	GWGCWC	2 cut(s)	18, 205
Alw26I	GTCTC	2 cut(s)	144, 461
AlwI	GGATC	2 cut(s)	168, 610
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	5 cut(s)	55, 242, 456, 610, 630
AspLEI	GCGC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	2 cut(s)	18, 205
BbvI	GCAGC	1 cut(s)	519
BccI	CCATC	1 cut(s)	448
BceAI	ACGGC	1 cut(s)	171
BcgI	CGANNNNNNTGC	4 cut(s)	287, 321, 468, 502
BcoDI	GTCTC	2 cut(s)	144, 461
BfaI	CTAG	1 cut(s)	606
BisI	GCNGC	1 cut(s)	508
BlsI	GCNGC	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	584
BmrI	ACTGGG	1 cut(s)	588
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	289
Bsa29I	ATCGAT	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	544
BsaI	GGTCTC	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse118I	RCCGGY	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	519
BshNI	GGYRCC	1 cut(s)	582
BshVI	ATCGAT	1 cut(s)	297
BsiHKAI	GWGCWC	2 cut(s)	18, 205
BsiSI	CCGG	1 cut(s)	476
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	2 cut(s)	144, 461
BsmFI	GGGAC	1 cut(s)	258
Bso31I	GGTCTC	1 cut(s)	461
Bsp1286I	GDGCHC	3 cut(s)	18, 119, 205
Bsp143I	GATC	5 cut(s)	38, 160, 223, 298, 602
BspACI	CCGC	3 cut(s)	78, 145, 600
BspCNI	CTCAG	1 cut(s)	246
BspDI	ATCGAT	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	584
BspPI	GGATC	2 cut(s)	168, 610
BspT107I	GGYRCC	1 cut(s)	582
BspTNI	GGTCTC	1 cut(s)	461
BsrBI	CCGCTC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	594
BssAI	RCCGGY	1 cut(s)	475
BssMI	GATC	5 cut(s)	38, 160, 223, 298, 602
Bst4CI	ACNGT	2 cut(s)	114, 366
Bst6I	CTCTTC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	582
BstBAI	YACGTR	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	392, 477
BstDEI	CTNAG	2 cut(s)	233, 353
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	5 cut(s)	41, 163, 226, 301, 605
BstMAI	GTCTC	2 cut(s)	144, 461
BstMBI	GATC	5 cut(s)	38, 160, 223, 298, 602
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 582
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	519
BstX2I	RGATCY	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	602
Bsu15I	ATCGAT	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	297
BtsIMutI	CAGTG	2 cut(s)	119, 601
Cac8I	GCNNGC	2 cut(s)	392, 477
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	475
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	522, 590
CviAII	CATG	4 cut(s)	10, 206, 285, 512
CviJI	RGCY	5 cut(s)	203, 437, 475, 510, 556
CviKI_1	RGCY	5 cut(s)	203, 437, 475, 510, 556
CviQI	GTAC	2 cut(s)	522, 590
DdeI	CTNAG	2 cut(s)	233, 353
DpnI	GATC	5 cut(s)	40, 162, 225, 300, 604
DpnII	GATC	5 cut(s)	38, 160, 223, 298, 602
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	615
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	461
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	4 cut(s)	13, 209, 288, 515
FaiI	YATR	8 cut(s)	11, 33, 184, 207, 286, 513, 569, 623
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	4 cut(s)	9, 205, 284, 511
Fnu4HI	GCNGC	1 cut(s)	508
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	508
FspBI	CTAG	1 cut(s)	606
FspI	TGCGCA	1 cut(s)	130
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	508
HapII	CCGG	1 cut(s)	476
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	13, 209, 288, 515
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	5 cut(s)	62, 271, 349, 485, 548
HpaII	CCGG	1 cut(s)	476
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	7, 547
Hpy188I	TCNGA	3 cut(s)	61, 139, 180
Hpy188III	TCNNGA	6 cut(s)	106, 158, 206, 235, 382, 606
Hpy8I	GTNNAC	2 cut(s)	7, 547
HpyCH4III	ACNGT	2 cut(s)	114, 366
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 582
HpyF3I	CTNAG	2 cut(s)	233, 353
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	4 cut(s)	13, 209, 288, 515
HspAI	GCGC	1 cut(s)	129
KroI	GCCGGC	1 cut(s)	475
KroNI	GCCGGC	1 cut(s)	477
Kzo9I	GATC	5 cut(s)	38, 160, 223, 298, 602
LmnI	GCTCC	5 cut(s)	13, 75, 88, 200, 561
LpnPI	CCDG	8 cut(s)	58, 91, 143, 220, 269, 367, 489, 607
Lsp1109I	GCAGC	1 cut(s)	519
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	5 cut(s)	40, 162, 225, 300, 604
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	5 cut(s)	38, 160, 223, 298, 602
MboII	GAAGA	2 cut(s)	226, 350
MfeI	CAATTG	1 cut(s)	172
MflI	RGATCY	1 cut(s)	602
MhlI	GDGCHC	3 cut(s)	18, 119, 205
MluCI	AATT	7 cut(s)	55, 172, 242, 456, 502, 610, 630
MlyI	GAGTC	2 cut(s)	280, 542
MnlI	CCTC	4 cut(s)	79, 334, 406, 415
MroNI	GCCGGC	1 cut(s)	475
MseI	TTAA	2 cut(s)	279, 634
MspI	CCGG	1 cut(s)	476
MunI	CAATTG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	200, 582
NaeI	GCCGGC	1 cut(s)	477
NdeII	GATC	5 cut(s)	38, 160, 223, 298, 602
NgoMIV	GCCGGC	1 cut(s)	475
NlaIII	CATG	4 cut(s)	13, 209, 288, 515
NlaIV	GGNNCC	1 cut(s)	584
NsbI	TGCGCA	1 cut(s)	130
PagI	TCATGA	1 cut(s)	205
PdiI	GCCGGC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	62, 349, 485
PkrI	GCNGC	1 cut(s)	509
PleI	GAGTC	2 cut(s)	279, 542
PpsI	GAGTC	2 cut(s)	279, 542
Ppu21I	YACGTR	1 cut(s)	544
Psp124BI	GAGCTC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	602
RsaI	GTAC	2 cut(s)	523, 591
RsaNI	GTAC	2 cut(s)	522, 590
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	279, 634
SatI	GCNGC	1 cut(s)	508
Sau3AI	GATC	5 cut(s)	38, 160, 223, 298, 602
SchI	GAGTC	2 cut(s)	280, 542
SduI	GDGCHC	3 cut(s)	18, 119, 205
SetI	ASST	6 cut(s)	205, 345, 359, 407, 546, 558
SfaNI	GCATC	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
Sse9I	AATT	7 cut(s)	55, 172, 242, 456, 502, 610, 630
SsiI	CCGC	3 cut(s)	78, 145, 600
SspMI	CTAG	1 cut(s)	606
SstI	GAGCTC	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	114, 366
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	2 cut(s)	41, 297
TasI	AATT	7 cut(s)	55, 172, 242, 456, 502, 610, 630
TfiI	GAWTC	3 cut(s)	62, 349, 485
Tru1I	TTAA	2 cut(s)	279, 634
Tru9I	TTAA	2 cut(s)	279, 634
TscAI	CASTG	2 cut(s)	119, 601
TseI	GCWGC	1 cut(s)	507
TspDTI	ATGAA	4 cut(s)	222, 227, 283, 351
TspRI	CASTG	2 cut(s)	119, 601
XapI	RAATTY	5 cut(s)	55, 242, 456, 610, 630
XbaI	TCTAGA	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	102
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.