Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

8645332 .. 8646157

Gene Structure 826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG106200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAAGGTGAAGCTTCCAATTCGAAGAAGGATCCAGTTTGTGAGATTTGTGTAGAGGACAAGTCTGCAAACGAGTTGTTTGGGATTCAAAATTGCTGCCATTCTTATTGCACGGTCTGTGTGGTCAATTACGTGGTTTCCAAGCTTCAAGAGAACATTACAGGCATTAGCTGTCCTGTTCCTGATTGCAGAGGATCGCTAGAGCCAGAGCACTGTCAATCAATTCTCCCCTCAGAAGTGTTCGATAGGTGGTTATGTGCATTGTGTGAAGCTTTGGTTCTTGAGTCTGAAAAGTTTTACTGTCCTTTTAAGGATTGCTCAGCGATGTTAATTGATGATGGGAAAGAGGTTGTGAGAGAATCGGAGTGCCCGAATTGTAGGAGATTGTTCTGTGCGCAGTGTAAGGTTTCTTGGCATGCCGGGTTTGACTGCGCAGAGTTTCAGAACTTGAATAAAGATGAGAGGGAAAATGAAGATATTTTGTTGAGGAACCTCGCTGACAAGAAAAAATGGAGGAGGTGTACAAATTGCCAGTACTATGTTGAAAAATCTGATGGTTGCTCTTACATGAAATGCAGATGTGGATATGCCTTCTGTTACAACTGTGGCGTAACAGCTCCCTTAGCTTCCCATACCGCTCAATGTCCAAGCTGTAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

220

Amino Acids

24.9

Weight (kDa)

5.23

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	88 - 144	2.4e-09	IBR domain, a half RING-finger domain
IBR	PF01485	159 - 206	3.8e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	396, 433
AccBSI	CCGCTC	1 cut(s)	638
AciI	CCGC	1 cut(s)	636
AclWI	GGATC	3 cut(s)	26, 39, 202
AfaI	GTAC	2 cut(s)	523, 536
AgsI	TTSAA	4 cut(s)	89, 149, 451, 545
AluBI	AGCT	7 cut(s)	14, 145, 171, 272, 617, 626, 651
AluI	AGCT	7 cut(s)	14, 145, 171, 272, 617, 626, 651
Alw21I	GWGCWC	1 cut(s)	213
AlwI	GGATC	3 cut(s)	26, 39, 202
ApeKI	GCWGC	1 cut(s)	96
AspLEI	GCGC	2 cut(s)	397, 434
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	2 cut(s)	332, 548
BcnI	CCSGG	1 cut(s)	421
BfaI	CTAG	1 cut(s)	200
BisI	GCNGC	1 cut(s)	97
BlpI	GCTNAGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	98
BmcAI	AGTACT	1 cut(s)	536
Bme1390I	CCNGG	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	33, 491
BmrFI	CCNGG	1 cut(s)	421
Bpu10I	CCTNAGC	1 cut(s)	622
Bpu1102I	GCTNAGC	1 cut(s)	319
Bpu14I	TTCGAA	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	421
BsaAI	YACGTR	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bse1I	ACTGG	2 cut(s)	35, 532
BseMII	CTCAG	2 cut(s)	246, 333
BseNI	ACTGG	2 cut(s)	35, 532
BseRI	GAGGAG	1 cut(s)	529
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	420
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	213, 371
Bsp1407I	TGTACA	1 cut(s)	521
Bsp143I	GATC	2 cut(s)	31, 194
Bsp1720I	GCTNAGC	1 cut(s)	319
BspACI	CCGC	1 cut(s)	636
BspCNI	CTCAG	2 cut(s)	245, 332
BspLI	GGNNCC	2 cut(s)	33, 491
BspPI	GGATC	3 cut(s)	26, 39, 202
BspT104I	TTCGAA	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	638
BsrGI	TGTACA	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	35, 532
BssMI	GATC	2 cut(s)	31, 194
Bst4CI	ACNGT	4 cut(s)	115, 215, 302, 605
BstAUI	TGTACA	1 cut(s)	521
BstBAI	YACGTR	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	3 cut(s)	232, 319, 622
BstHHI	GCGC	2 cut(s)	397, 434
BstKTI	GATC	2 cut(s)	34, 197
BstMBI	GATC	2 cut(s)	31, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	419
BstSLI	GKGCMC	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BtgZI	GCGATG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	211, 404
Cac8I	GCNNGC	1 cut(s)	417
CfoI	GCGC	2 cut(s)	397, 434
Csp6I	GTAC	2 cut(s)	522, 535
CviAII	CATG	2 cut(s)	416, 568
CviJI	RGCY	8 cut(s)	14, 145, 171, 205, 272, 617, 626, 651
CviKI_1	RGCY	8 cut(s)	14, 145, 171, 205, 272, 617, 626, 651
CviQI	GTAC	2 cut(s)	522, 535
DdeI	CTNAG	3 cut(s)	232, 319, 622
DpnI	GATC	2 cut(s)	33, 196
DpnII	GATC	2 cut(s)	31, 194
FaeI	CATG	2 cut(s)	419, 571
FaiI	YATR	6 cut(s)	256, 417, 540, 569, 588, 633
FatI	CATG	2 cut(s)	415, 567
Fnu4HI	GCNGC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	1 cut(s)	200
FspI	TGCGCA	2 cut(s)	396, 433
GlaI	GCGC	2 cut(s)	396, 433
GluI	GCNGC	1 cut(s)	97
HapII	CCGG	1 cut(s)	420
HhaI	GCGC	2 cut(s)	397, 434
Hin1II	CATG	2 cut(s)	419, 571
Hin6I	GCGC	2 cut(s)	395, 432
HinP1I	GCGC	2 cut(s)	395, 432
HindIII	AAGCTT	3 cut(s)	12, 143, 270
HinfI	GANTC	3 cut(s)	85, 284, 359
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	522
Hpy188I	TCNGA	5 cut(s)	235, 289, 364, 444, 553
Hpy188III	TCNNGA	3 cut(s)	149, 182, 281
Hpy8I	GTNNAC	1 cut(s)	522
HpyAV	CCTTC	2 cut(s)	22, 601
HpyCH4III	ACNGT	4 cut(s)	115, 215, 302, 605
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	5 cut(s)	68, 111, 189, 260, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	3 cut(s)	232, 319, 622
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	419, 571
HspAI	GCGC	2 cut(s)	395, 432
Kzo9I	GATC	2 cut(s)	31, 194
LmnI	GCTCC	1 cut(s)	622
LpnPI	CCDG	7 cut(s)	48, 147, 189, 195, 219, 433, 545
Lsp1109I	GCAGC	1 cut(s)	83
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	596, 610
MalI	GATC	2 cut(s)	33, 196
MbiI	CCGCTC	1 cut(s)	638
MboI	GATC	2 cut(s)	31, 194
MboII	GAAGA	2 cut(s)	37, 485
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	213, 371
MluCI	AATT	7 cut(s)	19, 91, 127, 222, 330, 373, 526
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	9 cut(s)	49, 185, 241, 340, 456, 480, 503, 507, 510
MseI	TTAA	2 cut(s)	309, 329
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	623
NciI	CCSGG	1 cut(s)	421
NdeII	GATC	2 cut(s)	31, 194
NlaIII	CATG	2 cut(s)	419, 571
NlaIV	GGNNCC	2 cut(s)	33, 491
NsbI	TGCGCA	2 cut(s)	396, 433
NspI	RCATGY	1 cut(s)	419
NspV	TTCGAA	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	85, 359
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Ppu21I	YACGTR	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	33, 491
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	2 cut(s)	523, 536
RsaNI	GTAC	2 cut(s)	522, 535
SaqAI	TTAA	2 cut(s)	309, 329
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	2 cut(s)	31, 194
ScaI	AGTACT	1 cut(s)	536
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	2 cut(s)	213, 371
SfuI	TTCGAA	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	7 cut(s)	19, 91, 127, 222, 330, 373, 526
SsiI	CCGC	1 cut(s)	636
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	4 cut(s)	115, 215, 302, 605
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	23, 243
TasI	AATT	7 cut(s)	19, 91, 127, 222, 330, 373, 526
TatI	WGTACW	2 cut(s)	521, 534
TfiI	GAWTC	2 cut(s)	85, 359
Tru1I	TTAA	2 cut(s)	309, 329
Tru9I	TTAA	2 cut(s)	309, 329
TscAI	CASTG	2 cut(s)	218, 404
TseI	GCWGC	1 cut(s)	96
TspDTI	ATGAA	2 cut(s)	486, 584
TspRI	CASTG	2 cut(s)	218, 404
XceI	RCATGY	1 cut(s)	419
XspI	CTAG	1 cut(s)	200
ZrmI	AGTACT	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.