Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

8842078 .. 8843894

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG105500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGAAGCAAGAAAGCGAAGAAACCCAAACTGGAGGAGAAAGTGTCTCAATCGCACATTGAGATTGTGAACATTGAAGACGATGAGCTTTGCTTCACACCAAAACGCTCTAGCAAGTTCAATTCTATCTCAGTCGATGAGAACAGAAACCTTCAATCAATCAAGGAATCTATTAAGGGATTTAAGGCCTCTCTTCTTAAGTCCACAGGTAATTTCATCGACCTTTCTGATGAAACTCATTCGGAAGATGACGAAGAGCTTAGAATTCTTAGGTTTCAACCCCCAAACACTACATTCGGAAAGCGAAAGGAACCCTTTAGTAGTCCGTCTGTAACCGAAGTTGGGGAATCTTCTAATTCCAATTCCAAAAAAGACCCATCATTTTTATGTGAAATTTGCGCCGAGCCCAAGTCTAGGAGTGAGTCATTTGGCATAAAAGACTGTAGTCATTCATATTGTACTGAGTGCATGATCAAATACGTGGCATCCAAGCTTCAAGAAAATGTTACATTCATTAAGTGCCCTGTTCCTGATTGCAAAGGGTTACTGGAGCCGGAGTATTGCCGTCCGATTCTGCCCCCTGAGGTGTTTGAGAGGTGGGGAAGTGCATTGTGTGAGGCGGTGATTCTCGGGTCTGAGAAGTTTTACTGCCCCTTTAAGGATTGCTCCGGAATGTTGATTGATGATGGAAAAGAGGTTGTACGGGAATCGGAGTGCCCTAATTGTTGGAGAATGTTCTGTGCGCAATGTAAGGTTCCTTGGCATGCTGGGATTGACTGCGCAGAGTTTCAGAAGTTGAATAAGGATGAGAGGGAAAAAGAAGATATTATGTTGAGAAAACTTGCACAGAACAAAGAGTGGAAGAGATGTCCCAAGTGTAGGTTCTATGTGGAAAAATCAGAAGGCTGCATGTTCATGAAGTGTAGGTGCCAAACTACTTTCTGCTACAGATGCGAACACGTTTTAAAGAGAAACCATAACCACTATTGTCCCAATTGTAAAGGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

336

Amino Acids

38.82

Weight (kDa)

8.06

Isoelectric Point (pI)

63.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	210 - 260	2e-09	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	744, 781
AccB1I	GGYRCC	1 cut(s)	927
AccIII	TCCGGA	1 cut(s)	668
AciI	CCGC	1 cut(s)	620
AcsI	RAATTY	2 cut(s)	264, 393
AfaI	GTAC	2 cut(s)	460, 702
AfiI	CCNNNNNNNGG	4 cut(s)	342, 414, 658, 879
AflII	CTTAAG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	958
AgsI	TTSAA	6 cut(s)	77, 121, 155, 278, 497, 799
AjuI	GAANNNNNNNTTGG	2 cut(s)	866, 898
AluBI	AGCT	3 cut(s)	88, 259, 493
AluI	AGCT	3 cut(s)	88, 259, 493
Alw26I	GTCTC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	629
Aor13HI	TCCGGA	1 cut(s)	668
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	906
ApoI	RAATTY	2 cut(s)	264, 393
AspLEI	GCGC	4 cut(s)	401, 745, 782, 1008
AsuHPI	GGTGA	1 cut(s)	634
AvaI	CYCGRG	1 cut(s)	629
AxyI	CCTNAGG	1 cut(s)	582
BaeGI	GKGCMC	2 cut(s)	524, 719
BanI	GGYRCC	1 cut(s)	927
BanII	GRGCYC	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	893
BccI	CCATC	2 cut(s)	385, 680
BceAI	ACGGC	1 cut(s)	549
BclI	TGATCA	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	111, 414
BfmI	CTRYAG	2 cut(s)	442, 946
BfoI	RGCGCY	1 cut(s)	1009
BfrI	CTTAAG	1 cut(s)	197
BisI	GCNGC	1 cut(s)	907
BlsI	GCNGC	1 cut(s)	908
BmeT110I	CYCGRG	1 cut(s)	629
BmiI	GGNNCC	4 cut(s)	312, 552, 756, 929
BmsI	GCATC	2 cut(s)	494, 941
BoxI	GACNNNNGTC	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	2 cut(s)	53, 569
BsaAI	YACGTR	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	758
BsaWI	WCCGGW	1 cut(s)	668
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 542, 572
Bsc4I	CCNNNNNNNGG	4 cut(s)	342, 414, 658, 879
Bse1I	ACTGG	2 cut(s)	36, 552
Bse21I	CCTNAGG	1 cut(s)	582
Bse3DI	GCAATG	1 cut(s)	752
BseAI	TCCGGA	1 cut(s)	668
BseDI	CCNNGG	1 cut(s)	758
BseGI	GGATG	2 cut(s)	485, 811
BseLI	CCNNNNNNNGG	4 cut(s)	342, 414, 658, 879
BseMI	GCAATG	1 cut(s)	752
BseMII	CTCAG	4 cut(s)	144, 453, 573, 627
BseNI	ACTGG	2 cut(s)	36, 552
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	2 cut(s)	524, 719
BseXI	GCAGC	1 cut(s)	893
BseYI	CCCAGC	1 cut(s)	767
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	927
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	2 cut(s)	554, 669
BslFI	GGGAC	2 cut(s)	855, 975
BslI	CCNNNNNNNGG	4 cut(s)	342, 414, 658, 879
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	2 cut(s)	855, 975
BsnI	GGCC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	629
Bsp1286I	GDGCHC	3 cut(s)	408, 524, 719
Bsp13I	TCCGGA	1 cut(s)	668
Bsp143I	GATC	1 cut(s)	471
BspACI	CCGC	1 cut(s)	620
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	4 cut(s)	143, 454, 574, 628
BspEI	TCCGGA	1 cut(s)	668
BspHI	TCATGA	1 cut(s)	915
BspLI	GGNNCC	4 cut(s)	312, 552, 756, 929
BspQI	GCTCTTC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	927
BspTI	CTTAAG	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	752
BsrI	ACTGG	2 cut(s)	36, 552
BssECI	CCNNGG	1 cut(s)	758
BssMI	GATC	1 cut(s)	471
BssT1I	CCWWGG	1 cut(s)	758
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	3 cut(s)	198, 249, 857
BstAFI	CTTAAG	1 cut(s)	197
BstBAI	YACGTR	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	6 cut(s)	130, 260, 269, 462, 582, 636
BstF5I	GGATG	2 cut(s)	485, 811
BstH2I	RGCGCY	1 cut(s)	1009
BstHHI	GCGC	4 cut(s)	401, 745, 782, 1008
BstKTI	GATC	1 cut(s)	474
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	471
BstMWI	GCNNNNNNNGC	1 cut(s)	951
BstNSI	RCATGY	2 cut(s)	767, 913
BstPAI	GACNNNNGTC	1 cut(s)	444
BstSFI	CTRYAG	2 cut(s)	442, 946
BstSLI	GKGCMC	2 cut(s)	524, 719
BstV1I	GCAGC	1 cut(s)	893
BstV2I	GAAGAC	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	485, 811
Cac8I	GCNNGC	1 cut(s)	765
CciI	TCATGA	1 cut(s)	915
CfoI	GCGC	4 cut(s)	401, 745, 782, 1008
Csp6I	GTAC	2 cut(s)	459, 701
CviAII	CATG	4 cut(s)	469, 764, 910, 916
CviJI	RGCY	7 cut(s)	88, 188, 259, 406, 493, 553, 906
CviKI_1	RGCY	7 cut(s)	88, 188, 259, 406, 493, 553, 906
CviQI	GTAC	2 cut(s)	459, 701
DdeI	CTNAG	6 cut(s)	130, 260, 269, 462, 582, 636
DpnI	GATC	1 cut(s)	473
DpnII	GATC	1 cut(s)	471
DraI	TTTAAA	1 cut(s)	966
Eam1104I	CTCTTC	3 cut(s)	198, 249, 857
EarI	CTCTTC	3 cut(s)	198, 249, 857
Eco130I	CCWWGG	1 cut(s)	758
Eco147I	AGGCCT	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	408
Eco81I	CCTNAGG	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	629
EcoRI	GAATTC	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	758
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	4 cut(s)	472, 767, 913, 919
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	2 cut(s)	855, 975
FatI	CATG	4 cut(s)	468, 763, 909, 915
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	1 cut(s)	907
FokI	GGATG	2 cut(s)	472, 818
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	1 cut(s)	907
FspBI	CTAG	2 cut(s)	111, 414
FspI	TGCGCA	2 cut(s)	744, 781
GlaI	GCGC	4 cut(s)	400, 744, 781, 1007
GluI	GCNGC	1 cut(s)	907
GsaI	CCCAGC	1 cut(s)	771
GsuI	CTGGAG	2 cut(s)	53, 569
HaeII	RGCGCY	1 cut(s)	1009
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	2 cut(s)	554, 669
HhaI	GCGC	4 cut(s)	401, 745, 782, 1008
Hin1II	CATG	4 cut(s)	472, 767, 913, 919
Hin6I	GCGC	4 cut(s)	399, 743, 780, 1006
HinP1I	GCGC	4 cut(s)	399, 743, 780, 1006
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	6 cut(s)	167, 347, 422, 571, 625, 707
HpaII	CCGG	2 cut(s)	554, 669
HphI	GGTGA	1 cut(s)	634
Hpy166II	GTNNAC	2 cut(s)	70, 204
Hpy188I	TCNGA	8 cut(s)	229, 244, 299, 570, 637, 712, 792, 901
Hpy188III	TCNNGA	4 cut(s)	497, 530, 669, 916
Hpy8I	GTNNAC	2 cut(s)	70, 204
HpyAV	CCTTC	2 cut(s)	161, 896
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	2 cut(s)	480, 960
HpyCH4V	TGCA	5 cut(s)	468, 537, 608, 845, 909
HpyF10VI	GCNNNNNNNGC	1 cut(s)	951
HpyF3I	CTNAG	6 cut(s)	130, 260, 269, 462, 582, 636
HpySE526I	ACGT	2 cut(s)	480, 960
Hsp92II	CATG	4 cut(s)	472, 767, 913, 919
HspAI	GCGC	4 cut(s)	399, 743, 780, 1006
Kpn2I	TCCGGA	1 cut(s)	668
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	471
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	550, 671
LpnPI	CCDG	9 cut(s)	17, 192, 533, 537, 543, 567, 594, 682, 753
Lsp1109I	GCAGC	1 cut(s)	893
LweI	GCATC	2 cut(s)	494, 941
MaeI	CTAG	2 cut(s)	111, 414
MaeII	ACGT	2 cut(s)	480, 960
MaeIII	GTNAC	3 cut(s)	331, 505, 543
MalI	GATC	1 cut(s)	473
MboI	GATC	1 cut(s)	471
MboII	GAAGA	8 cut(s)	31, 89, 185, 257, 266, 342, 833, 874
MfeI	CAATTG	1 cut(s)	994
MhlI	GDGCHC	3 cut(s)	408, 524, 719
MluCI	AATT	8 cut(s)	121, 211, 264, 355, 361, 393, 721, 994
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	707
MnlI	CCTC	7 cut(s)	28, 199, 577, 588, 610, 688, 804
MroI	TCCGGA	1 cut(s)	668
MseI	TTAA	6 cut(s)	174, 183, 198, 516, 657, 965
MslI	CAYNNNNRTG	2 cut(s)	385, 914
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	2 cut(s)	554, 669
MunI	CAATTG	1 cut(s)	994
MwoI	GCNNNNNNNGC	1 cut(s)	951
NdeII	GATC	1 cut(s)	471
NlaIII	CATG	4 cut(s)	472, 767, 913, 919
NlaIV	GGNNCC	4 cut(s)	312, 552, 756, 929
NmeAIII	GCCGAG	1 cut(s)	427
NsbI	TGCGCA	2 cut(s)	744, 781
NspI	RCATGY	2 cut(s)	767, 913
PaeI	GCATGC	1 cut(s)	767
PagI	TCATGA	1 cut(s)	915
PceI	AGGCCT	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	249
PfeI	GAWTC	5 cut(s)	167, 347, 571, 625, 707
PkrI	GCNGC	1 cut(s)	908
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	481
PshAI	GACNNNNGTC	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	767
PspN4I	GGNNCC	4 cut(s)	312, 552, 756, 929
RsaI	GTAC	2 cut(s)	460, 702
RsaNI	GTAC	2 cut(s)	459, 701
RseI	CAYNNNNRTG	2 cut(s)	385, 914
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	6 cut(s)	174, 183, 198, 516, 657, 965
SatI	GCNGC	1 cut(s)	907
Sau3AI	GATC	1 cut(s)	471
SchI	GAGTC	1 cut(s)	431
SduI	GDGCHC	3 cut(s)	408, 524, 719
SfaNI	GCATC	2 cut(s)	494, 941
SfcI	CTRYAG	2 cut(s)	442, 946
SmiMI	CAYNNNNRTG	2 cut(s)	385, 914
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SphI	GCATGC	1 cut(s)	767
Sse9I	AATT	8 cut(s)	121, 211, 264, 355, 361, 393, 721, 994
SseBI	AGGCCT	1 cut(s)	188
SsiI	CCGC	1 cut(s)	620
SspMI	CTAG	2 cut(s)	111, 414
StuI	AGGCCT	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	2 cut(s)	483, 963
TaqI	TCGA	2 cut(s)	135, 219
TasI	AATT	8 cut(s)	121, 211, 264, 355, 361, 393, 721, 994
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	5 cut(s)	167, 347, 571, 625, 707
Tru1I	TTAA	6 cut(s)	174, 183, 198, 516, 657, 965
Tru9I	TTAA	6 cut(s)	174, 183, 198, 516, 657, 965
TseI	GCWGC	1 cut(s)	906
TspDTI	ATGAA	6 cut(s)	205, 246, 441, 502, 904, 932
TspGWI	ACGGA	1 cut(s)	315
Vha464I	CTTAAG	1 cut(s)	197
XapI	RAATTY	2 cut(s)	264, 393
XceI	RCATGY	2 cut(s)	767, 913
XspI	CTAG	2 cut(s)	111, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.