Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

83694637 .. 83695706

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCTTTTGTAACCATGGAAGGTGAAGCTTCCAATTCCAAGAAGGATCCAGTTTGTGAGATTTGTATAGAGGACAAGTCTGCAAATGAGTTGTTTGTGATTCAAAATTGCAGCCATTCTTATTGCACGGTCTGTGTGGTCAATTACGTGGTTTCCAAGCTTCAAGAGAACATTACAGGCATTAGCTGTCCTGTTCCTGATTGCAGAGGATCGCTAGAGCCGGAGCACTGTCAATCAATTCTCCCCTCAGAAGTGTTCGATAGGTGGTTAAGTGGATTGTGTGAAGCTTTGGTTCTTGAGTCTGAAAAGTTTTACTGTCCTTTTAAGGATTGCTCAGCTATGTTAATTGATGATGGGAAAGAGGTTGTGAGAGAATCGGAGTGCCCGAATTGTAGGAGATTGTTCTGTGCGCAGTGTAAGGTTTCTTGGCATGCCGGGATTGACTGCGCAGAGTTTCAGAACTTGAATAAAGATGAGAGGGAAAATGAAGATATTTTGTTGAGGAACCTCGCTGACAAGAAAAAATGGAGGAGGTGTACAAATTGTCAGTACTATGTTGAAAAATCTTATGGTTGCTCTTACATGAAATGCAGATGTGGATATGCCTTCTGTTACAACTGTGGCGTAACAGCTCCCTTAGATTCCCATACCGCTCAATGTTCAAGCTGCAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

225

Amino Acids

25.53

Weight (kDa)

5.23

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	100 - 149	1.7e-10	IBR domain, a half RING-finger domain
IBR	PF01485	164 - 211	3e-06	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	411, 448
AccBSI	CCGCTC	1 cut(s)	653
AciI	CCGC	1 cut(s)	651
AclWI	GGATC	3 cut(s)	41, 54, 217
AfaI	GTAC	2 cut(s)	538, 551
AgsI	TTSAA	5 cut(s)	104, 164, 466, 560, 663
AluBI	AGCT	7 cut(s)	29, 160, 186, 287, 338, 632, 666
AluI	AGCT	7 cut(s)	29, 160, 186, 287, 338, 632, 666
Alw21I	GWGCWC	1 cut(s)	228
AlwI	GGATC	3 cut(s)	41, 54, 217
ApeKI	GCWGC	2 cut(s)	111, 666
AspLEI	GCGC	2 cut(s)	412, 449
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	386
BamHI	GGATCC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	123, 653
BccI	CCATC	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	436
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	2 cut(s)	112, 667
BlpI	GCTNAGC	1 cut(s)	334
BlsI	GCNGC	2 cut(s)	113, 668
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	48, 506
BmrFI	CCNGG	1 cut(s)	436
Bpu1102I	GCTNAGC	1 cut(s)	334
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	436
BsaAI	YACGTR	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	520, 550
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	15
BseMII	CTCAG	2 cut(s)	261, 348
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	544
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	2 cut(s)	123, 653
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	221, 435
Bsp1286I	GDGCHC	2 cut(s)	228, 386
Bsp1407I	TGTACA	1 cut(s)	536
Bsp143I	GATC	2 cut(s)	46, 209
Bsp1720I	GCTNAGC	1 cut(s)	334
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	651
BspCNI	CTCAG	2 cut(s)	260, 347
BspLI	GGNNCC	2 cut(s)	48, 506
BspPI	GGATC	3 cut(s)	41, 54, 217
BsrBI	CCGCTC	1 cut(s)	653
BsrGI	TGTACA	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	46, 209
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	4 cut(s)	130, 230, 317, 620
BstAUI	TGTACA	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	432, 671
BstDEI	CTNAG	3 cut(s)	247, 334, 637
BstDSI	CCRYGG	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	412, 449
BstKTI	GATC	2 cut(s)	49, 212
BstMBI	GATC	2 cut(s)	46, 209
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	434
BstSLI	GKGCMC	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	123, 653
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	226, 419
Cac8I	GCNNGC	2 cut(s)	432, 671
CfoI	GCGC	2 cut(s)	412, 449
Csp6I	GTAC	2 cut(s)	537, 550
CviAII	CATG	3 cut(s)	16, 431, 583
CviJI	RGCY	9 cut(s)	29, 114, 160, 186, 220, 287, 338, 632, 666
CviKI_1	RGCY	9 cut(s)	29, 114, 160, 186, 220, 287, 338, 632, 666
CviQI	GTAC	2 cut(s)	537, 550
DdeI	CTNAG	3 cut(s)	247, 334, 637
DpnI	GATC	2 cut(s)	48, 211
DpnII	GATC	2 cut(s)	46, 209
Eco130I	CCWWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	3 cut(s)	19, 434, 586
FaiI	YATR	9 cut(s)	17, 68, 341, 432, 555, 570, 584, 603, 648
FatI	CATG	3 cut(s)	15, 430, 582
Fnu4HI	GCNGC	2 cut(s)	112, 667
Fsp4HI	GCNGC	2 cut(s)	112, 667
FspBI	CTAG	1 cut(s)	215
FspI	TGCGCA	2 cut(s)	411, 448
GlaI	GCGC	2 cut(s)	411, 448
GluI	GCNGC	2 cut(s)	112, 667
HapII	CCGG	2 cut(s)	221, 435
HhaI	GCGC	2 cut(s)	412, 449
Hin1II	CATG	3 cut(s)	19, 434, 586
Hin6I	GCGC	2 cut(s)	410, 447
HinP1I	GCGC	2 cut(s)	410, 447
HindIII	AAGCTT	3 cut(s)	27, 158, 285
HinfI	GANTC	4 cut(s)	100, 299, 374, 641
HpaII	CCGG	2 cut(s)	221, 435
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	537
Hpy188I	TCNGA	4 cut(s)	250, 304, 379, 459
Hpy188III	TCNNGA	3 cut(s)	164, 197, 296
Hpy8I	GTNNAC	1 cut(s)	537
HpyAV	CCTTC	3 cut(s)	14, 37, 616
HpyCH4III	ACNGT	4 cut(s)	130, 230, 317, 620
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	6 cut(s)	83, 111, 126, 204, 591, 669
HpyF3I	CTNAG	3 cut(s)	247, 334, 637
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	19, 434, 586
HspAI	GCGC	2 cut(s)	410, 447
Kzo9I	GATC	2 cut(s)	46, 209
LmnI	GCTCC	2 cut(s)	223, 637
LpnPI	CCDG	6 cut(s)	63, 162, 204, 210, 234, 448
Lsp1109I	GCAGC	2 cut(s)	123, 653
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	10, 611, 625
MalI	GATC	2 cut(s)	48, 211
MbiI	CCGCTC	1 cut(s)	653
MboI	GATC	2 cut(s)	46, 209
MboII	GAAGA	1 cut(s)	500
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	228, 386
MluCI	AATT	7 cut(s)	34, 106, 142, 237, 345, 388, 541
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	9 cut(s)	64, 200, 256, 355, 471, 495, 518, 522, 525
MseI	TTAA	3 cut(s)	269, 324, 344
MspI	CCGG	2 cut(s)	221, 435
MspR9I	CCNGG	1 cut(s)	436
NciI	CCSGG	1 cut(s)	436
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	46, 209
NlaIII	CATG	3 cut(s)	19, 434, 586
NlaIV	GGNNCC	2 cut(s)	48, 506
NsbI	TGCGCA	2 cut(s)	411, 448
NspI	RCATGY	1 cut(s)	434
PaeI	GCATGC	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PfeI	GAWTC	3 cut(s)	100, 374, 641
PkrI	GCNGC	2 cut(s)	113, 668
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Ppu21I	YACGTR	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	48, 506
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	2 cut(s)	538, 551
RsaNI	GTAC	2 cut(s)	537, 550
SaqAI	TTAA	3 cut(s)	269, 324, 344
SatI	GCNGC	2 cut(s)	112, 667
Sau3AI	GATC	2 cut(s)	46, 209
ScaI	AGTACT	1 cut(s)	551
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	436
SduI	GDGCHC	2 cut(s)	228, 386
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SphI	GCATGC	1 cut(s)	434
Sse9I	AATT	7 cut(s)	34, 106, 142, 237, 345, 388, 541
SsiI	CCGC	1 cut(s)	651
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	4 cut(s)	130, 230, 317, 620
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	258
TasI	AATT	7 cut(s)	34, 106, 142, 237, 345, 388, 541
TatI	WGTACW	2 cut(s)	536, 549
TfiI	GAWTC	3 cut(s)	100, 374, 641
Tru1I	TTAA	3 cut(s)	269, 324, 344
Tru9I	TTAA	3 cut(s)	269, 324, 344
TscAI	CASTG	2 cut(s)	233, 419
TseI	GCWGC	2 cut(s)	111, 666
TspDTI	ATGAA	2 cut(s)	501, 599
TspRI	CASTG	2 cut(s)	233, 419
XceI	RCATGY	1 cut(s)	434
XspI	CTAG	1 cut(s)	215
ZrmI	AGTACT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.