Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

93733944 .. 93734841

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGAGAAACTTGCTTACAAGAAGCACTGGAGAAAGTGCCCAACTTGTGGGATCTATGTGGAAAGATCTGGAGGCTGCACAACAATACGATGCAGGAGTACAGAAGGATTCAGCGGGACCGGGAGGAACCCTATACTAGAGCTACTGCTGAACTTGCTATTGAGAAATGGAGATCCATGTCTCGTTCTGAAAAAAAGCCCTAGAGAATCCAGAGATGGAACCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

75

Amino Acids

8.44

Weight (kDa)

9.36

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	47
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	2 cut(s)	59, 167
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	47
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	59, 167
ApeKI	GCWGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	2 cut(s)	137, 201
BglII	AGATCT	1 cut(s)	65
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	3 cut(s)	118, 128, 220
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	80
BpmI	CTGGAG	2 cut(s)	49, 90
BpuMI	CCSGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	51, 65, 172
BspACI	CCGC	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	118, 128, 220
BspPI	GGATC	2 cut(s)	59, 167
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	3 cut(s)	51, 65, 172
BstKTI	GATC	3 cut(s)	54, 68, 175
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	3 cut(s)	51, 65, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	3 cut(s)	51, 65, 172
BstYI	RGATCY	3 cut(s)	51, 65, 172
BtsIMutI	CAGTG	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	1 cut(s)	177
CviJI	RGCY	3 cut(s)	75, 142, 198
CviKI_1	RGCY	3 cut(s)	75, 142, 198
CviQI	GTAC	1 cut(s)	99
DpnI	GATC	3 cut(s)	53, 67, 174
DpnII	GATC	3 cut(s)	51, 65, 172
Eco47I	GGWCC	1 cut(s)	117
FaeI	CATG	1 cut(s)	180
FaiI	YATR	3 cut(s)	57, 134, 178
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	176
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	2 cut(s)	137, 201
GluI	GCNGC	1 cut(s)	76
GsuI	CTGGAG	2 cut(s)	49, 90
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	1 cut(s)	180
HinfI	GANTC	2 cut(s)	108, 206
HpaII	CCGG	1 cut(s)	120
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	69, 210
HpyAV	CCTTC	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	78, 93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
Hsp92II	CATG	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	51, 65, 172
LpnPI	CCDG	5 cut(s)	13, 54, 79, 133, 223
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	2 cut(s)	137, 201
MalI	GATC	3 cut(s)	53, 67, 174
MboI	GATC	3 cut(s)	51, 65, 172
MflI	RGATCY	3 cut(s)	51, 65, 172
MhlI	GDGCHC	1 cut(s)	41
MnlI	CCTC	2 cut(s)	65, 117
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	3 cut(s)	51, 65, 172
NlaIII	CATG	1 cut(s)	180
NlaIV	GGNNCC	3 cut(s)	118, 128, 220
PfeI	GAWTC	2 cut(s)	108, 206
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	77
PspN4I	GGNNCC	3 cut(s)	118, 128, 220
PspPI	GGNCC	1 cut(s)	117
PsuI	RGATCY	3 cut(s)	51, 65, 172
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	3 cut(s)	51, 65, 172
Sau96I	GGNCC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	80
SinI	GGWCC	1 cut(s)	117
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	2 cut(s)	137, 201
StyD4I	CCNGG	1 cut(s)	119
TatI	WGTACW	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	108, 206
TscAI	CASTG	1 cut(s)	32
TseI	GCWGC	1 cut(s)	75
TspRI	CASTG	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	117
XspI	CTAG	2 cut(s)	137, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.