Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

55800316 .. 55802761

Gene Structure 2446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0389700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2004 bp

ATGGCCGTTCCTCCGCCGCCTCTCGTTTTCTTCTTCCTCCTTATACTCAGCTCCTTTTTCAACCCGACCCATCAGAAACCTTCGATCACGCTAAACACGACGACCCTATCCAAATCCGGCGACTCGGTCCTGATCAAATGGTCCGGCGTCGACTCGCCTTCCAAGCTCGACTGGCTCGGCATCTACTCGCCGCCTTCCTCCCGCAACCACCACTTCTTGGGTTACAAGTTCCTCTCCTCCAGCCCCACCTGGCAATCCGGGTCGGGCTCCATTTCCCTCCCCTTAATCAACCTCCGATCCAACTACTCCTTCCGGATCTTCCGCTGGTCCGAGTCCGAGATCAACCCCAAACGCCACGACCACGACAATAACCCCCTCCCCGGAGTCAAGCACCTGCTCGCCACGTCACCGGAGCTCGCCTTCGAATCGGGTCGGGTCCCGGACCAGATCCACTTATCCTACACCGACCGCCTCGACCAGATGCGGGTCATGTTCGTCACCCCGGACCGCGATGACCGCGCCGTGAAATACGGCCTGAGCAAGGACTCGCTGGATGACGTGGCGGCGGCACGTGTGAGCCGGTACGAGCTGCAGCACATGTGCGACTGGCCGGCCAATCACAGCGTCGGCTGGAGAGACCCTGGGTTTGTTCACGACGGCGTCATGACCAATCTCAAAAGCGGTGTCAGATATTATTACAAGGTTGGGAGTGATGATGGAGGTTGGAGCGAAACGCACAGTTTTGTGTCCAGAAATGGAGATTCCGACGAAGCAGTAGCTTTCATGTTCGGTGACATGGGCACTACAACGCCGTATGCCACGTTTCTTCGTGTCCAAGACGAAAGCGTGGCCACCGTGAAGTGGATTCTTCGTGACATTGAAGCTCTTGGTGACAAGCCGGCTTTCGTGTCCCACATCGGAGACATAAGCTATGCTAGAGGCTATTCATGGCTGTGGGATCATTTCTTTAATCAAATTGAGCCGGTTGCGACGAAGCTGCCGTATCATGTTTGCATTGGGAATCATGAGTATGACTGGCCGTTGCAGCCGTGGAAGCCGGAGTGGTCTAGTTCGATTTATGGGAACGATGGAGGTGGAGAATGTGGGGTGCCGTATAGTGTTAGGTTCAACATGCCTGGGAACTCGTTGGAGCCGACTGGGACTAGTGCACCGGGGACTAGGAACCTATACTATTCCTTTGACATGGGGTCGGTTCGTTTTGTGTACATTTCGACCGAGACCAATTTTGTGACGGGAAGCAAGCAGCATGAGTTTATAAAGCGTGATTTGGAGAGTGTGAACCGGACCAAGACTCCTTTCGTGGTGGTTAGTGGACACAGGCCGATGTACACTACGAGCAATGAGGGAAGGGATGCGCCTATGAGGAGGCAAATGCTGGAGCATTTGGAGCCTTTGTTTGTGAAGAACAATGTCACCCTTGCATTATGGGGACATGTTCATAGATACGAGAGGTTTTGTCCGATGAGTAACTATACTTGTGGGAGTAGAGGGCCTGTTCATGTTGTGATTGGGATGGGAGGACAGGACTGGCAACCGATATGGGAACCTAGAGCGGATCACCCAACTGATCCCATTTTCCCACAGCCACTGAGGTCTATGTACCGCGGTGGTGAATTTGGCTACACTAGATTGGTTGCTTCAAAAGAGAAGCTTACACTTTCTTATGTTGGAAACCATGATGGACAGGTGCATGATTCGGTGGAGATTCTGGCTTCGGGAGAGGTTCTGGGTGGTGAAGCCGGTGGTGATGGTGTCGAAGCTCTTGGTAACGGGGTCAAAGCTGCTGTGAATGGTAGTGATGGTGCTGGTTTTTCTGGAAATGGGAGCAAATCGGATTCCAAACTTACTTTGTTTGTAAAGGGAGCAAGCGTTTTAGTCCTTGGGGCTTTCATAGGCTATGTTATTGGTTTTGTTTCGCACGCCAGGAAAAGGGCCATCTCAGAAAATAGTTGGATTCCGGTGAAGAGGGAGGAGGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

667

Amino Acids

74.29

Weight (kDa)

6.34

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	147 - 249	1.7e-19	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	280 - 489	1.2e-12	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	504 - 573	1.5e-14	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1277
AarI	CACCTGC	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	1108
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccBSI	CCGCTC	1 cut(s)	1574
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	3 cut(s)	510, 519, 1626
AccIII	TCCGGA	1 cut(s)	312
AclWI	GGATC	6 cut(s)	291, 323, 442, 966, 1583, 1584
AcoI	YGGCCR	5 cut(s)	3, 608, 612, 849, 1037
AcsI	RAATTY	1 cut(s)	1634
AcvI	CACGTG	1 cut(s)	572
AcyI	GRCGYC	2 cut(s)	147, 660
AfaI	GTAC	4 cut(s)	584, 1226, 1349, 1622
AfiI	CCNNNNNNNGG	6 cut(s)	217, 380, 484, 541, 861, 1950
AflIII	ACRYGT	3 cut(s)	571, 597, 1453
AgsI	TTSAA	4 cut(s)	61, 881, 1129, 1662
AhdI	GACNNNNNGTC	1 cut(s)	1207
AhlI	ACTAGT	1 cut(s)	1163
AjiI	CACGTC	2 cut(s)	405, 559
AjnI	CCWGG	4 cut(s)	248, 640, 1135, 1943
AjuI	GAANNNNNNNTTGG	4 cut(s)	293, 325, 1301, 1333
Alw21I	GWGCWC	2 cut(s)	417, 1171
Alw26I	GTCTC	3 cut(s)	630, 915, 1232
Alw44I	GTGCAC	1 cut(s)	1167
AlwI	GGATC	6 cut(s)	291, 323, 442, 966, 1583, 1584
AlwNI	CAGNNNCTG	1 cut(s)	1609
Aor13HI	TCCGGA	1 cut(s)	312
AoxI	GGCC	9 cut(s)	3, 532, 608, 612, 849, 1037, 1340, 1511, 1953
ApaLI	GTGCAC	1 cut(s)	1167
ApeKI	GCWGC	6 cut(s)	589, 592, 997, 1045, 1264, 1802
ApoI	RAATTY	1 cut(s)	1634
ArsI	GACNNNNNNTTYG	4 cut(s)	629, 661, 669, 701
AspLEI	GCGC	2 cut(s)	521, 1378
AspS9I	GGNCC	9 cut(s)	127, 141, 327, 436, 442, 505, 1305, 1511, 1953
AsuC2I	CCSGG	5 cut(s)	259, 381, 440, 503, 1173
AsuII	TTCGAA	1 cut(s)	423
AvaII	GGWCC	7 cut(s)	127, 141, 327, 436, 442, 505, 1305
BaeGI	GKGCMC	2 cut(s)	803, 1171
BalI	TGGCCA	1 cut(s)	851
BanI	GGYRCC	1 cut(s)	1108
BanII	GRGCYC	2 cut(s)	269, 417
BbrPI	CACGTG	1 cut(s)	572
Bbv12I	GWGCWC	2 cut(s)	417, 1171
BbvI	GCAGC	6 cut(s)	576, 604, 984, 1057, 1276, 1789
BccI	CCATC	8 cut(s)	78, 710, 1082, 1528, 1694, 1763, 1814, 1964
BceAI	ACGGC	8 cut(s)	506, 547, 673, 796, 985, 1024, 1033, 1096
BcgI	CGANNNNNNTGC	2 cut(s)	979, 1013
BciT130I	CCWGG	4 cut(s)	250, 642, 1137, 1945
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	5 cut(s)	259, 381, 440, 503, 1173
BcoDI	GTCTC	3 cut(s)	630, 915, 1232
BcuI	ACTAGT	1 cut(s)	1163
BfaI	CTAG	6 cut(s)	936, 1068, 1164, 1179, 1569, 1647
BfmI	CTRYAG	1 cut(s)	590
BfuAI	ACCTGC	1 cut(s)	402
Bme1390I	CCNGG	9 cut(s)	250, 259, 381, 440, 503, 642, 1137, 1173, 1945
Bme18I	GGWCC	7 cut(s)	127, 141, 327, 436, 442, 505, 1305
BmeRI	GACNNNNNGTC	1 cut(s)	1207
BmgBI	CACGTC	2 cut(s)	405, 559
BmgT120I	GGNCC	9 cut(s)	127, 141, 327, 436, 442, 505, 1305, 1511, 1953
BmiI	GGNNCC	8 cut(s)	268, 437, 438, 1110, 1152, 1184, 1410, 1566
BmrFI	CCNGG	9 cut(s)	250, 259, 381, 440, 503, 642, 1137, 1173, 1945
BmrI	ACTGGG	1 cut(s)	1167
BmsI	GCATC	3 cut(s)	189, 471, 1363
BmuI	ACTGGG	1 cut(s)	1167
BpmI	CTGGAG	3 cut(s)	223, 652, 1418
Bpu10I	CCTNAGC	1 cut(s)	536
Bpu14I	TTCGAA	1 cut(s)	423
BpuMI	CCSGG	5 cut(s)	259, 381, 440, 503, 1173
BsaAI	YACGTR	1 cut(s)	572
BsaHI	GRCGYC	2 cut(s)	147, 660
BsaI	GGTCTC	2 cut(s)	630, 1232
BsaJI	CCNNGG	9 cut(s)	379, 501, 640, 641, 1049, 1136, 1172, 1624, 1900
BsaWI	WCCGGW	4 cut(s)	312, 409, 1302, 1978
BsaXI	ACNNNNNCTCC	6 cut(s)	1297, 1327, 1400, 1430, 1875, 1905
Bsc4I	CCNNNNNNNGG	6 cut(s)	217, 380, 484, 541, 861, 1950
Bse118I	RCCGGY	5 cut(s)	579, 610, 898, 982, 1760
Bse1I	ACTGG	5 cut(s)	176, 611, 1040, 1162, 1553
Bse3DI	GCAATG	1 cut(s)	1366
BseAI	TCCGGA	1 cut(s)	312
BseBI	CCWGG	4 cut(s)	250, 642, 1137, 1945
BseDI	CCNNGG	9 cut(s)	379, 501, 640, 641, 1049, 1136, 1172, 1624, 1900
BseGI	GGATG	3 cut(s)	559, 1378, 1539
BseLI	CCNNNNNNNGG	6 cut(s)	217, 380, 484, 541, 861, 1950
BseMI	GCAATG	1 cut(s)	1366
BseMII	CTCAG	4 cut(s)	61, 527, 1601, 1974
BseNI	ACTGG	5 cut(s)	176, 611, 1040, 1162, 1553
BseRI	GAGGAG	2 cut(s)	226, 1399
BseSI	GKGCMC	2 cut(s)	803, 1171
BseXI	GCAGC	6 cut(s)	576, 604, 984, 1057, 1276, 1789
Bsh1236I	CGCG	3 cut(s)	510, 519, 1626
Bsh1285I	CGRYCG	2 cut(s)	469, 1236
BshFI	GGCC	9 cut(s)	5, 534, 610, 614, 851, 1039, 1342, 1513, 1955
BshNI	GGYRCC	1 cut(s)	1108
BsiEI	CGRYCG	2 cut(s)	469, 1236
BsiHKAI	GWGCWC	2 cut(s)	417, 1171
BslFI	GGGAC	5 cut(s)	422, 895, 1174, 1189, 1464
BslI	CCNNNNNNNGG	6 cut(s)	217, 380, 484, 541, 861, 1950
BsmAI	GTCTC	3 cut(s)	630, 915, 1232
BsmFI	GGGAC	5 cut(s)	422, 895, 1174, 1189, 1464
BsnI	GGCC	9 cut(s)	5, 534, 610, 614, 851, 1039, 1342, 1513, 1955
Bso31I	GGTCTC	2 cut(s)	630, 1232
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1286I	GDGCHC	4 cut(s)	269, 417, 803, 1171
Bsp13I	TCCGGA	1 cut(s)	312
Bsp1407I	TGTACA	2 cut(s)	1224, 1347
Bsp143I	GATC	9 cut(s)	84, 132, 296, 315, 339, 447, 958, 1576, 1588
BspANI	GGCC	9 cut(s)	5, 534, 610, 614, 851, 1039, 1342, 1513, 1955
BspCNI	CTCAG	4 cut(s)	60, 528, 1602, 1973
BspEI	TCCGGA	1 cut(s)	312
BspFNI	CGCG	3 cut(s)	510, 519, 1626
BspHI	TCATGA	3 cut(s)	663, 1024, 2000
BspLI	GGNNCC	8 cut(s)	268, 437, 438, 1110, 1152, 1184, 1410, 1566
BspMAI	CTGCAG	1 cut(s)	594
BspMI	ACCTGC	1 cut(s)	402
BspPI	GGATC	6 cut(s)	291, 323, 442, 966, 1583, 1584
BspT104I	TTCGAA	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	1108
BspTNI	GGTCTC	2 cut(s)	630, 1232
BsrBI	CCGCTC	1 cut(s)	1574
BsrDI	GCAATG	1 cut(s)	1366
BsrFI	RCCGGY	5 cut(s)	579, 610, 898, 982, 1760
BsrGI	TGTACA	2 cut(s)	1224, 1347
BsrI	ACTGG	5 cut(s)	176, 611, 1040, 1162, 1553
BssAI	RCCGGY	5 cut(s)	579, 610, 898, 982, 1760
BssECI	CCNNGG	9 cut(s)	379, 501, 640, 641, 1049, 1136, 1172, 1624, 1900
BssMI	GATC	9 cut(s)	84, 132, 296, 315, 339, 447, 958, 1576, 1588
BssNI	GRCGYC	2 cut(s)	147, 660
BssT1I	CCWWGG	1 cut(s)	1900
Bst2UI	CCWGG	4 cut(s)	250, 642, 1137, 1945
Bst4CI	ACNGT	2 cut(s)	740, 856
Bst6I	CTCTTC	1 cut(s)	1979
BstACI	GRCGYC	2 cut(s)	147, 660
BstAUI	TGTACA	2 cut(s)	1224, 1347
BstBAI	YACGTR	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	423
BstC8I	GCNNGC	7 cut(s)	399, 417, 612, 900, 1262, 1888, 1941
BstDEI	CTNAG	4 cut(s)	47, 536, 1610, 1960
BstDSI	CCRYGG	2 cut(s)	1049, 1624
BstENI	CCTNNNNNAGG	1 cut(s)	539
BstF5I	GGATG	3 cut(s)	559, 1378, 1539
BstFNI	CGCG	3 cut(s)	510, 519, 1626
BstHHI	GCGC	2 cut(s)	521, 1378
BstKTI	GATC	9 cut(s)	87, 135, 299, 318, 342, 450, 961, 1579, 1591
BstMAI	GTCTC	3 cut(s)	630, 915, 1232
BstMBI	GATC	9 cut(s)	84, 132, 296, 315, 339, 447, 958, 1576, 1588
BstMCI	CGRYCG	2 cut(s)	469, 1236
BstMWI	GCNNNNNNNGC	6 cut(s)	163, 172, 516, 1045, 1054, 1408
BstNI	CCWGG	4 cut(s)	250, 642, 1137, 1945
BstNSI	RCATGY	3 cut(s)	601, 1135, 1457
BstSCI	CCNGG	9 cut(s)	248, 257, 379, 438, 501, 640, 1135, 1171, 1943
BstSFI	CTRYAG	1 cut(s)	590
BstSLI	GKGCMC	2 cut(s)	803, 1171
BstUI	CGCG	3 cut(s)	510, 519, 1626
BstV1I	GCAGC	6 cut(s)	576, 604, 984, 1057, 1276, 1789
BstX2I	RGATCY	2 cut(s)	315, 447
BstYI	RGATCY	2 cut(s)	315, 447
BsuRI	GGCC	9 cut(s)	5, 534, 610, 614, 851, 1039, 1342, 1513, 1955
BtgI	CCRYGG	2 cut(s)	1049, 1624
BtgZI	GCGATG	1 cut(s)	525
BtrI	CACGTC	2 cut(s)	405, 559
BtsCI	GGATG	3 cut(s)	559, 1378, 1539
BtsIMutI	CAGTG	1 cut(s)	1607
BveI	ACCTGC	1 cut(s)	402
Cac8I	GCNNGC	7 cut(s)	399, 417, 612, 900, 1262, 1888, 1941
CaiI	CAGNNNCTG	1 cut(s)	1609
CciI	TCATGA	3 cut(s)	663, 1024, 2000
CfoI	GCGC	2 cut(s)	521, 1378
Cfr10I	RCCGGY	5 cut(s)	579, 610, 898, 982, 1760
Cfr13I	GGNCC	9 cut(s)	127, 141, 327, 436, 442, 505, 1305, 1511, 1953
Cfr42I	CCGCGG	1 cut(s)	1627
CpoI	CGGWCCG	1 cut(s)	505
CseI	GACGC	3 cut(s)	136, 613, 649
Csp6I	GTAC	4 cut(s)	583, 1225, 1348, 1621
CspI	CGGWCCG	1 cut(s)	505
CviQI	GTAC	4 cut(s)	583, 1225, 1348, 1621
DdeI	CTNAG	4 cut(s)	47, 536, 1610, 1960
DpnI	GATC	9 cut(s)	86, 134, 298, 317, 341, 449, 960, 1578, 1590
DpnII	GATC	9 cut(s)	84, 132, 296, 315, 339, 447, 958, 1576, 1588
DriI	GACNNNNNGTC	1 cut(s)	1207
EaeI	YGGCCR	5 cut(s)	3, 608, 612, 849, 1037
Eam1104I	CTCTTC	1 cut(s)	1979
Eam1105I	GACNNNNNGTC	1 cut(s)	1207
EarI	CTCTTC	1 cut(s)	1979
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	1900
Eco24I	GRGCYC	2 cut(s)	269, 417
Eco31I	GGTCTC	2 cut(s)	630, 1232
Eco47I	GGWCC	7 cut(s)	127, 141, 327, 436, 442, 505, 1305
Eco53kI	GAGCTC	1 cut(s)	415
Eco72I	CACGTG	1 cut(s)	572
EcoICRI	GAGCTC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	539
EcoO109I	RGGNCCY	2 cut(s)	436, 1511
EcoRII	CCWGG	4 cut(s)	248, 640, 1135, 1943
EcoT14I	CCWWGG	1 cut(s)	1900
EcoT38I	GRGCYC	2 cut(s)	269, 417
ErhI	CCWWGG	1 cut(s)	1900
FalI	AAGNNNNNCTT	2 cut(s)	1656, 1688
FaqI	GGGAC	5 cut(s)	422, 895, 1174, 1189, 1464
FauI	CCCGC	2 cut(s)	209, 477
FbaI	TGATCA	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	150
FokI	GGATG	3 cut(s)	566, 1385, 1546
FriOI	GRGCYC	2 cut(s)	269, 417
FseI	GGCCGGCC	1 cut(s)	614
FspBI	CTAG	6 cut(s)	936, 1068, 1164, 1179, 1569, 1647
GlaI	GCGC	2 cut(s)	520, 1377
GsuI	CTGGAG	3 cut(s)	223, 652, 1418
HaeIII	GGCC	9 cut(s)	5, 534, 610, 614, 851, 1039, 1342, 1513, 1955
HgaI	GACGC	3 cut(s)	136, 613, 649
HhaI	GCGC	2 cut(s)	521, 1378
Hin1I	GRCGYC	2 cut(s)	147, 660
Hin6I	GCGC	2 cut(s)	519, 1376
HinP1I	GCGC	2 cut(s)	519, 1376
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	1670
Hpy166II	GTNNAC	7 cut(s)	151, 652, 1169, 1225, 1300, 1334, 1350
Hpy8I	GTNNAC	7 cut(s)	151, 652, 1169, 1225, 1300, 1334, 1350
Hpy99I	CGWCG	6 cut(s)	103, 152, 629, 659, 770, 994
HpyAV	CCTTC	6 cut(s)	90, 168, 204, 319, 430, 1362
HpyCH4III	ACNGT	2 cut(s)	740, 856
HpyCH4IV	ACGT	4 cut(s)	404, 558, 571, 821
HpyCH4V	TGCA	6 cut(s)	592, 1014, 1045, 1169, 1442, 1711
HpyF10VI	GCNNNNNNNGC	6 cut(s)	163, 172, 516, 1045, 1054, 1408
HpyF3I	CTNAG	4 cut(s)	47, 536, 1610, 1960
HpySE526I	ACGT	4 cut(s)	404, 558, 571, 821
Hsp92I	GRCGYC	2 cut(s)	147, 660
HspAI	GCGC	2 cut(s)	519, 1376
KflI	GGGWCCC	1 cut(s)	436
Kpn2I	TCCGGA	1 cut(s)	312
KroI	GCCGGC	2 cut(s)	610, 898
KroNI	GCCGGC	2 cut(s)	612, 900
Ksp22I	TGATCA	1 cut(s)	132
KspI	CCGCGG	1 cut(s)	1627
Kzo9I	GATC	9 cut(s)	84, 132, 296, 315, 339, 447, 958, 1576, 1588
LmnI	GCTCC	9 cut(s)	56, 272, 412, 726, 1150, 1399, 1408, 1845, 1883
Lsp1109I	GCAGC	6 cut(s)	576, 604, 984, 1057, 1276, 1789
LweI	GCATC	3 cut(s)	189, 471, 1363
MaeI	CTAG	6 cut(s)	936, 1068, 1164, 1179, 1569, 1647
MaeII	ACGT	4 cut(s)	404, 558, 571, 821
MalI	GATC	9 cut(s)	86, 134, 298, 317, 341, 449, 960, 1578, 1590
MbiI	CCGCTC	1 cut(s)	1574
MboI	GATC	9 cut(s)	84, 132, 296, 315, 339, 447, 958, 1576, 1588
MboII	GAAGA	7 cut(s)	22, 25, 310, 818, 860, 1435, 1996
MflI	RGATCY	2 cut(s)	315, 447
MhlI	GDGCHC	4 cut(s)	269, 417, 803, 1171
MlsI	TGGCCA	1 cut(s)	851
MluCI	AATT	3 cut(s)	975, 1243, 1634
MluNI	TGGCCA	1 cut(s)	851
MlyI	GAGTC	6 cut(s)	116, 146, 341, 393, 539, 1306
MmeI	TCCRAC	6 cut(s)	324, 704, 789, 1128, 1669, 1952
Mox20I	TGGCCA	1 cut(s)	851
MroI	TCCGGA	1 cut(s)	312
MroNI	GCCGGC	2 cut(s)	610, 898
MscI	TGGCCA	1 cut(s)	851
MseI	TTAA	2 cut(s)	284, 969
MslI	CAYNNNNRTG	2 cut(s)	952, 1029
Msp20I	TGGCCA	1 cut(s)	851
MspA1I	CMGCKG	2 cut(s)	324, 1626
MspR9I	CCNGG	9 cut(s)	250, 259, 381, 440, 503, 642, 1137, 1173, 1945
MvaI	CCWGG	4 cut(s)	250, 642, 1137, 1945
MvnI	CGCG	3 cut(s)	510, 519, 1626
MwoI	GCNNNNNNNGC	6 cut(s)	163, 172, 516, 1045, 1054, 1408
NaeI	GCCGGC	2 cut(s)	612, 900
NciI	CCSGG	5 cut(s)	259, 381, 440, 503, 1173
NdeII	GATC	9 cut(s)	84, 132, 296, 315, 339, 447, 958, 1576, 1588
NgoMIV	GCCGGC	2 cut(s)	610, 898
NlaIV	GGNNCC	8 cut(s)	268, 437, 438, 1110, 1152, 1184, 1410, 1566
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	7 cut(s)	405, 496, 791, 872, 890, 1249, 1432
NspI	RCATGY	3 cut(s)	601, 1135, 1457
NspV	TTCGAA	1 cut(s)	423
PagI	TCATGA	3 cut(s)	663, 1024, 2000
PaqCI	CACCTGC	1 cut(s)	402
PasI	CCCWGGG	1 cut(s)	641
PciI	ACATGT	2 cut(s)	597, 1453
PcsI	WCGNNNNNNNCGW	3 cut(s)	95, 998, 1151
PdiI	GCCGGC	2 cut(s)	612, 900
PfeI	GAWTC	9 cut(s)	425, 761, 865, 1021, 1715, 1726, 1856, 1975, 1997
PflFI	GACNNNGTC	2 cut(s)	125, 659
PflMI	CCANNNNNTGG	1 cut(s)	217
PfoI	TCCNGGA	1 cut(s)	438
PleI	GAGTC	6 cut(s)	116, 146, 340, 392, 539, 1306
PmaCI	CACGTG	1 cut(s)	572
PmlI	CACGTG	1 cut(s)	572
PpsI	GAGTC	6 cut(s)	116, 146, 340, 392, 539, 1306
Ppu21I	YACGTR	1 cut(s)	572
PpuMI	RGGWCCY	1 cut(s)	436
PscI	ACATGT	2 cut(s)	597, 1453
PsiI	TTATAA	1 cut(s)	1277
Psp124BI	GAGCTC	1 cut(s)	417
Psp5II	RGGWCCY	1 cut(s)	436
Psp6I	CCWGG	4 cut(s)	248, 640, 1135, 1943
PspCI	CACGTG	1 cut(s)	572
PspGI	CCWGG	4 cut(s)	248, 640, 1135, 1943
PspN4I	GGNNCC	8 cut(s)	268, 437, 438, 1110, 1152, 1184, 1410, 1566
PspPI	GGNCC	9 cut(s)	127, 141, 327, 436, 442, 505, 1305, 1511, 1953
PspPPI	RGGWCCY	1 cut(s)	436
PstI	CTGCAG	1 cut(s)	594
PstNI	CAGNNNCTG	1 cut(s)	1609
PsuI	RGATCY	2 cut(s)	315, 447
PsyI	GACNNNGTC	2 cut(s)	125, 659
RigI	GGCCGGCC	1 cut(s)	614
RsaI	GTAC	4 cut(s)	584, 1226, 1349, 1622
RsaNI	GTAC	4 cut(s)	583, 1225, 1348, 1621
RseI	CAYNNNNRTG	2 cut(s)	952, 1029
Rsr2I	CGGWCCG	1 cut(s)	505
RsrII	CGGWCCG	1 cut(s)	505
SacI	GAGCTC	1 cut(s)	417
SacII	CCGCGG	1 cut(s)	1627
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	284, 969
Sau3AI	GATC	9 cut(s)	84, 132, 296, 315, 339, 447, 958, 1576, 1588
Sau96I	GGNCC	9 cut(s)	127, 141, 327, 436, 442, 505, 1305, 1511, 1953
SchI	GAGTC	6 cut(s)	116, 146, 341, 393, 539, 1306
ScrFI	CCNGG	9 cut(s)	250, 259, 381, 440, 503, 642, 1137, 1173, 1945
SduI	GDGCHC	4 cut(s)	269, 417, 803, 1171
SfaNI	GCATC	3 cut(s)	189, 471, 1363
SfcI	CTRYAG	1 cut(s)	590
Sfr303I	CCGCGG	1 cut(s)	1627
SfuI	TTCGAA	1 cut(s)	423
SgrBI	CCGCGG	1 cut(s)	1627
SinI	GGWCC	7 cut(s)	127, 141, 327, 436, 442, 505, 1305
SmiMI	CAYNNNNRTG	2 cut(s)	952, 1029
SpeI	ACTAGT	1 cut(s)	1163
Sse9I	AATT	3 cut(s)	975, 1243, 1634
SspMI	CTAG	6 cut(s)	936, 1068, 1164, 1179, 1569, 1647
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	9 cut(s)	248, 257, 379, 438, 501, 640, 1135, 1171, 1943
StyI	CCWWGG	1 cut(s)	1900
TaaI	ACNGT	2 cut(s)	740, 856
TaiI	ACGT	4 cut(s)	407, 561, 574, 824
TaqI	TCGA	8 cut(s)	83, 150, 168, 423, 474, 1073, 1232, 1776
TaqII	GACCGA	2 cut(s)	115, 1250
TasI	AATT	3 cut(s)	975, 1243, 1634
TatI	WGTACW	2 cut(s)	1224, 1347
TauI	GCSGC	4 cut(s)	19, 193, 566, 569
TfiI	GAWTC	9 cut(s)	425, 761, 865, 1021, 1715, 1726, 1856, 1975, 1997
Tru1I	TTAA	2 cut(s)	284, 969
Tru9I	TTAA	2 cut(s)	284, 969
TscAI	CASTG	1 cut(s)	1614
TseFI	GTSAC	7 cut(s)	405, 496, 791, 872, 890, 1249, 1432
TseI	GCWGC	6 cut(s)	589, 592, 997, 1045, 1264, 1802
Tsp45I	GTSAC	7 cut(s)	405, 496, 791, 872, 890, 1249, 1432
TspDTI	ATGAA	6 cut(s)	772, 936, 1448, 1508, 1900, 1989
TspRI	CASTG	1 cut(s)	1614
Tth111I	GACNNNGTC	2 cut(s)	125, 659
Van91I	CCANNNNNTGG	1 cut(s)	217
VneI	GTGCAC	1 cut(s)	1167
VpaK11BI	GGWCC	7 cut(s)	127, 141, 327, 436, 442, 505, 1305
XagI	CCTNNNNNAGG	1 cut(s)	539
XapI	RAATTY	1 cut(s)	1634
XceI	RCATGY	3 cut(s)	601, 1135, 1457
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	6 cut(s)	936, 1068, 1164, 1179, 1569, 1647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.