Rorug02G0056500

IBR domain, a half RING-finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000271
Physical Location & Seq
Forward (+)
4372058 .. 4373089
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0056500.1

Sequence Viewer

Length: 1032 bp
ATGGCGAGGGAGTCTGTTGCACAAAGTTATTTGAATGAACTTATCTCCAAAAATCTGGTTCTTGCCACTGAAAGAGAAATCAATGGACAACTACAGAGTTGTTGTGTTGTTTTGCACCATGTCCGTGATTACATCCTTTCAAAAGAGGAGAATTTCGTTACTGTTTTGGAGTCTGACCCAGACCGGAGGACTATGCCTGCATTTGAGAAAATTCGACGCCTTTTAGTGTTAAAAGCTGATTGTGTCAGTCTGCGGTACTCTTTCAACTTGAATCATTTGCATACCTTAGTGGTCTTTGGTAGTTGGTCTTATTCTGAGCTTAAATGGGTACTTGAAAACTGTAAATATTTGAGGGTTTTAGATTTGCAAGGAGTAACTAATTTGAAGGAGTTTCCCGAAAACTTTTCCGTTAAGGGTCTCATTCTCTTGAAGTACTTGAGTCTGCGGGGATCAAGGAATACAACAATTCCAAAGTCCATAAGAAAGTATCAATGCTTGAAGACCTTAGTTCTTGAAGACACCATGGTGATCAAATTGCCAGAAAAAGAGATGCGTGTACTCAAGAATCTGCGCCATTTTTCAGTCTCGTCCAATCATACTGGCGGAGTGATGTTATCAGCTGGCAATATTAAAGATTTATCTTCCATACACGGGTTCTCACTGATTAAGGTGAAAAACAACAGAACAATCATAAAAGCCTTGGGAGAGTTGAAAAATGTTAGGAATTTAGGACTGGTAGATCTTGAAACACAAGATGGACAAGAACTATGTACTGCCCTTGAGAAAATGAAGCATCTTTCGACACTTGATATAAGAGCAGAACGCCTGGAGTTCCTTGATTTGGATCATATGCGATCCCCTCCTCATTTTCTCCAGGGTCTACATTTGGAAGGACGCCTAGAAGGGCTACCTAAGTGGATTCTCCAGCTTAGTAGTCTAGAGAAGATTGGTTTACATGGTTCAGAGCTGAGGGCTAACGTTAACCCACTTGAGCTCCTTCAAGCTCTGCCTTATCTGCTTGAGCTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-C3HC4

Protein Analysis

343

Amino Acids

39.25

Weight (kDa)

8.77

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 108 - 342 1.6e-26 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 880
AciI CCGC 3 cut(s) 253, 445, 603
AclI AACGTT 1 cut(s) 978
AclWI GGATC 3 cut(s) 457, 849, 852
AcsI RAATTY 3 cut(s) 151, 210, 724
AcyI GRCGYC 2 cut(s) 217, 895
AfaI GTAC 5 cut(s) 257, 330, 434, 558, 772
AfiI CCNNNNNNNGG 2 cut(s) 651, 841
AjnI CCWGG 2 cut(s) 825, 873
AleI CACNNNNGTG 1 cut(s) 524
AluBI AGCT 8 cut(s) 236, 319, 620, 928, 967, 994, 1004, 1024
AluI AGCT 8 cut(s) 236, 319, 620, 928, 967, 994, 1004, 1024
Alw21I GWGCWC 1 cut(s) 996
Alw26I GTCTC 2 cut(s) 422, 589
AlwI GGATC 3 cut(s) 457, 849, 852
ApoI RAATTY 3 cut(s) 151, 210, 724
AspLEI GCGC 1 cut(s) 573
AsuHPI GGTGA 2 cut(s) 538, 682
BanII GRGCYC 1 cut(s) 996
BbsI GAAGAC 2 cut(s) 506, 522
Bbv12I GWGCWC 1 cut(s) 996
BbvCI CCTCAGC 1 cut(s) 968
BccI CCATC 1 cut(s) 749
BciT130I CCWGG 2 cut(s) 827, 875
BclI TGATCA 1 cut(s) 528
BcoDI GTCTC 2 cut(s) 422, 589
BfaI CTAG 3 cut(s) 899, 938, 1030
BfmI CTRYAG 1 cut(s) 92
BglII AGATCT 1 cut(s) 739
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 2 cut(s) 827, 875
BmrFI CCNGG 2 cut(s) 827, 875
BmsI GCATC 2 cut(s) 540, 802
BpiI GAAGAC 2 cut(s) 506, 522
BpmI CTGGAG 3 cut(s) 848, 857, 908
Bpu10I CCTNAGC 1 cut(s) 968
BpuEI CTTGAG 4 cut(s) 457, 545, 800, 1010
BsaBI GATNNNNATC 1 cut(s) 843
BsaHI GRCGYC 2 cut(s) 217, 895
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 3 cut(s) 522, 699, 874
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 978, 1008
Bsc4I CCNNNNNNNGG 2 cut(s) 651, 841
Bse1I ACTGG 2 cut(s) 604, 738
Bse8I GATNNNNATC 1 cut(s) 843
BseBI CCWGG 2 cut(s) 827, 875
BseDI CCNNGG 3 cut(s) 522, 699, 874
BseGI GGATG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 2 cut(s) 651, 841
BseMII CTCAG 2 cut(s) 306, 959
BseNI ACTGG 2 cut(s) 604, 738
BseRI GAGGAG 2 cut(s) 161, 852
BsiHKAI GWGCWC 1 cut(s) 996
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 651, 841
BsmAI GTCTC 2 cut(s) 422, 589
Bso31I GGTCTC 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 996
Bsp143I GATC 5 cut(s) 449, 528, 739, 844, 854
Bsp19I CCATGG 1 cut(s) 522
BspACI CCGC 3 cut(s) 253, 445, 603
BspCNI CTCAG 2 cut(s) 307, 960
BspPI GGATC 3 cut(s) 457, 849, 852
BspTNI GGTCTC 1 cut(s) 422
BsrI ACTGG 2 cut(s) 604, 738
BssECI CCNNGG 3 cut(s) 522, 699, 874
BssMI GATC 5 cut(s) 449, 528, 739, 844, 854
BssNI GRCGYC 2 cut(s) 217, 895
BssT1I CCWWGG 2 cut(s) 522, 699
Bst2UI CCWGG 2 cut(s) 827, 875
Bst4CI ACNGT 2 cut(s) 163, 341
BstACI GRCGYC 2 cut(s) 217, 895
BstC8I GCNNGC 2 cut(s) 198, 622
BstDEI CTNAG 6 cut(s) 286, 315, 505, 912, 929, 968
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 5 cut(s) 452, 531, 742, 847, 857
BstMAI GTCTC 2 cut(s) 422, 589
BstMBI GATC 5 cut(s) 449, 528, 739, 844, 854
BstMWI GCNNNNNNNGC 1 cut(s) 1015
BstNI CCWGG 2 cut(s) 827, 875
BstSCI CCNGG 2 cut(s) 825, 873
BstSFI CTRYAG 1 cut(s) 92
BstV2I GAAGAC 2 cut(s) 506, 522
BstX2I RGATCY 1 cut(s) 739
BstXI CCANNNNNNTGG 1 cut(s) 55
BstYI RGATCY 1 cut(s) 739
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 66, 659
Cac8I GCNNGC 2 cut(s) 198, 622
CfoI GCGC 1 cut(s) 573
CseI GACGC 2 cut(s) 225, 903
Csp6I GTAC 5 cut(s) 256, 329, 433, 557, 771
CviAII CATG 3 cut(s) 119, 523, 956
CviQI GTAC 5 cut(s) 256, 329, 433, 557, 771
DdeI CTNAG 6 cut(s) 286, 315, 505, 912, 929, 968
DpnI GATC 5 cut(s) 451, 530, 741, 846, 856
DpnII GATC 5 cut(s) 449, 528, 739, 844, 854
EciI GGCGGA 1 cut(s) 618
Ecl136II GAGCTC 1 cut(s) 994
Eco130I CCWWGG 2 cut(s) 522, 699
Eco24I GRGCYC 1 cut(s) 996
Eco31I GGTCTC 1 cut(s) 422
Eco53kI GAGCTC 1 cut(s) 994
EcoICRI GAGCTC 1 cut(s) 994
EcoRII CCWGG 2 cut(s) 825, 873
EcoT14I CCWWGG 2 cut(s) 522, 699
EcoT38I GRGCYC 1 cut(s) 996
ErhI CCWWGG 2 cut(s) 522, 699
FaeI CATG 3 cut(s) 122, 526, 959
FatI CATG 3 cut(s) 118, 522, 955
FauI CCCGC 1 cut(s) 438
FauNDI CATATG 1 cut(s) 849
FbaI TGATCA 1 cut(s) 528
FblI GTMKAC 1 cut(s) 880
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 996
FspBI CTAG 3 cut(s) 899, 938, 1030
GlaI GCGC 1 cut(s) 572
GsuI CTGGAG 3 cut(s) 848, 857, 908
HapII CCGG 1 cut(s) 184
HgaI GACGC 2 cut(s) 225, 903
HhaI GCGC 1 cut(s) 573
Hin1I GRCGYC 2 cut(s) 217, 895
Hin1II CATG 3 cut(s) 122, 526, 959
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HincII GTYRAC 1 cut(s) 982
HindII GTYRAC 1 cut(s) 982
HinfI GANTC 6 cut(s) 11, 170, 271, 439, 565, 919
HpaI GTTAAC 1 cut(s) 982
HpaII CCGG 1 cut(s) 184
HphI GGTGA 2 cut(s) 538, 682
Hpy166II GTNNAC 4 cut(s) 557, 881, 953, 982
Hpy188I TCNGA 3 cut(s) 175, 316, 964
Hpy188III TCNNGA 6 cut(s) 395, 427, 512, 562, 743, 938
Hpy8I GTNNAC 4 cut(s) 557, 881, 953, 982
Hpy99I CGWCG 1 cut(s) 219
HpyAV CCTTC 4 cut(s) 379, 884, 896, 1007
HpyCH4III ACNGT 2 cut(s) 163, 341
HpyCH4IV ACGT 1 cut(s) 978
HpyCH4V TGCA 5 cut(s) 20, 115, 200, 280, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 1015
HpyF3I CTNAG 6 cut(s) 286, 315, 505, 912, 929, 968
HpySE526I ACGT 1 cut(s) 978
Hsp92I GRCGYC 2 cut(s) 217, 895
Hsp92II CATG 3 cut(s) 122, 526, 959
HspAI GCGC 1 cut(s) 571
Ksp22I TGATCA 1 cut(s) 528
KspAI GTTAAC 1 cut(s) 982
Kzo9I GATC 5 cut(s) 449, 528, 739, 844, 854
LmnI GCTCC 1 cut(s) 999
LweI GCATC 2 cut(s) 540, 802
MaeI CTAG 3 cut(s) 899, 938, 1030
MaeII ACGT 1 cut(s) 978
MaeIII GTNAC 2 cut(s) 157, 373
MalI GATC 5 cut(s) 451, 530, 741, 846, 856
MboI GATC 5 cut(s) 449, 528, 739, 844, 854
MboII GAAGA 4 cut(s) 511, 527, 633, 955
MflI RGATCY 1 cut(s) 739
MhlI GDGCHC 1 cut(s) 996
MluCI AATT 6 cut(s) 151, 210, 379, 465, 533, 724
MlyI GAGTC 3 cut(s) 20, 179, 448
MnlI CCTC 6 cut(s) 139, 180, 345, 870, 873, 963
MseI TTAA 6 cut(s) 230, 321, 411, 630, 666, 981
MslI CAYNNNNRTG 2 cut(s) 123, 524
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 2 cut(s) 827, 875
MvaI CCWGG 2 cut(s) 827, 875
MwoI GCNNNNNNNGC 1 cut(s) 1015
NcoI CCATGG 1 cut(s) 522
NdeI CATATG 1 cut(s) 849
NdeII GATC 5 cut(s) 449, 528, 739, 844, 854
NlaIII CATG 3 cut(s) 122, 526, 959
OliI CACNNNNGTG 1 cut(s) 524
PfeI GAWTC 3 cut(s) 271, 565, 919
PleI GAGTC 3 cut(s) 19, 178, 447
PpsI GAGTC 3 cut(s) 19, 178, 447
Psp124BI GAGCTC 1 cut(s) 996
Psp1406I AACGTT 1 cut(s) 978
Psp6I CCWGG 2 cut(s) 825, 873
PspGI CCWGG 2 cut(s) 825, 873
PsuI RGATCY 1 cut(s) 739
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 5 cut(s) 257, 330, 434, 558, 772
RsaNI GTAC 5 cut(s) 256, 329, 433, 557, 771
RseI CAYNNNNRTG 2 cut(s) 123, 524
SacI GAGCTC 1 cut(s) 996
SaqAI TTAA 6 cut(s) 230, 321, 411, 630, 666, 981
Sau3AI GATC 5 cut(s) 449, 528, 739, 844, 854
ScaI AGTACT 1 cut(s) 434
SchI GAGTC 3 cut(s) 20, 179, 448
ScrFI CCNGG 2 cut(s) 827, 875
SduI GDGCHC 1 cut(s) 996
SfaNI GCATC 2 cut(s) 540, 802
SfcI CTRYAG 1 cut(s) 92
SmiMI CAYNNNNRTG 2 cut(s) 123, 524
SmlI CTYRAG 5 cut(s) 436, 560, 779, 989, 1019
SmoI CTYRAG 5 cut(s) 436, 560, 779, 989, 1019
Sse9I AATT 6 cut(s) 151, 210, 379, 465, 533, 724
SsiI CCGC 3 cut(s) 253, 445, 603
SspI AATATT 2 cut(s) 347, 628
SspMI CTAG 3 cut(s) 899, 938, 1030
SstI GAGCTC 1 cut(s) 996
StyD4I CCNGG 2 cut(s) 825, 873
StyI CCWWGG 2 cut(s) 522, 699
TaaI ACNGT 2 cut(s) 163, 341
TaiI ACGT 1 cut(s) 981
TaqI TCGA 2 cut(s) 214, 800
TasI AATT 6 cut(s) 151, 210, 379, 465, 533, 724
TatI WGTACW 3 cut(s) 432, 556, 770
TfiI GAWTC 3 cut(s) 271, 565, 919
Tru1I TTAA 6 cut(s) 230, 321, 411, 630, 666, 981
Tru9I TTAA 6 cut(s) 230, 321, 411, 630, 666, 981
TscAI CASTG 2 cut(s) 73, 666
TspDTI ATGAA 2 cut(s) 51, 803
TspGWI ACGGA 2 cut(s) 113, 397
TspRI CASTG 2 cut(s) 73, 666
XapI RAATTY 3 cut(s) 151, 210, 724
XbaI TCTAGA 1 cut(s) 937
XmiI GTMKAC 1 cut(s) 880
XspI CTAG 3 cut(s) 899, 938, 1030
ZrmI AGTACT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.