E3 ubiquitin-protein ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| IBR | PF01485 | 219 - 269 | 2e-09 | IBR domain, a half RING-finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 771, 873 |
| AccB1I | GGYRCC | 1 cut(s) | 954 |
| AciI | CCGC | 2 cut(s) | 647, 1033 |
| AcsI | RAATTY | 2 cut(s) | 15, 382 |
| AfaI | GTAC | 1 cut(s) | 487 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 81, 347, 369, 685, 906 |
| AflIII | ACRYGT | 1 cut(s) | 985 |
| AgsI | TTSAA | 6 cut(s) | 13, 154, 281, 524, 826, 994 |
| AjnI | CCWGG | 1 cut(s) | 223 |
| AluBI | AGCT | 2 cut(s) | 277, 520 |
| AluI | AGCT | 2 cut(s) | 277, 520 |
| Alw26I | GTCTC | 1 cut(s) | 40 |
| Ama87I | CYCGRG | 1 cut(s) | 656 |
| AoxI | GGCC | 2 cut(s) | 204, 1030 |
| ApoI | RAATTY | 2 cut(s) | 15, 382 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 125, 157 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 149 |
| AspA2I | CCTAGG | 1 cut(s) | 440 |
| AspLEI | GCGC | 3 cut(s) | 428, 772, 874 |
| AspS9I | GGNCC | 1 cut(s) | 84 |
| AsuC2I | CCSGG | 1 cut(s) | 697 |
| AsuHPI | GGTGA | 1 cut(s) | 661 |
| AsuII | TTCGAA | 2 cut(s) | 19, 380 |
| AvaI | CYCGRG | 1 cut(s) | 656 |
| AvaII | GGWCC | 1 cut(s) | 84 |
| AvrII | CCTAGG | 1 cut(s) | 440 |
| AxyI | CCTNAGG | 1 cut(s) | 609 |
| BaeGI | GKGCMC | 2 cut(s) | 551, 746 |
| BanI | GGYRCC | 1 cut(s) | 954 |
| BbsI | GAAGAC | 1 cut(s) | 114 |
| BccI | CCATC | 1 cut(s) | 707 |
| BceAI | ACGGC | 1 cut(s) | 576 |
| BciT130I | CCWGG | 1 cut(s) | 225 |
| BclI | TGATCA | 1 cut(s) | 498 |
| BcnI | CCSGG | 1 cut(s) | 697 |
| BcoDI | GTCTC | 1 cut(s) | 40 |
| BfaI | CTAG | 1 cut(s) | 441 |
| BfmI | CTRYAG | 1 cut(s) | 973 |
| BisI | GCNGC | 1 cut(s) | 1033 |
| BlnI | CCTAGG | 1 cut(s) | 440 |
| BlsI | GCNGC | 1 cut(s) | 1034 |
| Bme1390I | CCNGG | 2 cut(s) | 225, 697 |
| Bme18I | GGWCC | 1 cut(s) | 84 |
| BmeT110I | CYCGRG | 1 cut(s) | 656 |
| BmgT120I | GGNCC | 1 cut(s) | 84 |
| BmiI | GGNNCC | 3 cut(s) | 579, 783, 956 |
| BmrFI | CCNGG | 2 cut(s) | 225, 697 |
| BmsI | GCATC | 2 cut(s) | 521, 968 |
| BpiI | GAAGAC | 1 cut(s) | 114 |
| BpmI | CTGGAG | 2 cut(s) | 77, 596 |
| Bpu10I | CCTNAGC | 1 cut(s) | 435 |
| Bpu14I | TTCGAA | 2 cut(s) | 19, 380 |
| BpuMI | CCSGG | 1 cut(s) | 697 |
| BsaAI | YACGTR | 1 cut(s) | 508 |
| BsaI | GGTCTC | 1 cut(s) | 40 |
| BsaJI | CCNNGG | 3 cut(s) | 223, 440, 785 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 569, 599 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 81, 347, 369, 685, 906 |
| Bse1I | ACTGG | 1 cut(s) | 60 |
| Bse21I | CCTNAGG | 1 cut(s) | 609 |
| Bse3DI | GCAATG | 1 cut(s) | 779 |
| BseBI | CCWGG | 1 cut(s) | 225 |
| BseDI | CCNNGG | 3 cut(s) | 223, 440, 785 |
| BseGI | GGATG | 3 cut(s) | 512, 705, 838 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 81, 347, 369, 685, 906 |
| BseMI | GCAATG | 1 cut(s) | 779 |
| BseMII | CTCAG | 2 cut(s) | 600, 654 |
| BseNI | ACTGG | 1 cut(s) | 60 |
| BseRI | GAGGAG | 1 cut(s) | 74 |
| BseSI | GKGCMC | 2 cut(s) | 551, 746 |
| BseYI | CCCAGC | 1 cut(s) | 794 |
| BshFI | GGCC | 2 cut(s) | 206, 1032 |
| BshNI | GGYRCC | 1 cut(s) | 954 |
| BsiHKCI | CYCGRG | 1 cut(s) | 656 |
| BsiSI | CCGG | 2 cut(s) | 581, 696 |
| BslFI | GGGAC | 3 cut(s) | 58, 882, 1002 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 81, 347, 369, 685, 906 |
| BsmAI | GTCTC | 1 cut(s) | 40 |
| BsmFI | GGGAC | 3 cut(s) | 58, 882, 1002 |
| BsnI | GGCC | 2 cut(s) | 206, 1032 |
| Bso31I | GGTCTC | 1 cut(s) | 40 |
| BsoBI | CYCGRG | 1 cut(s) | 656 |
| Bsp119I | TTCGAA | 2 cut(s) | 19, 380 |
| Bsp1286I | GDGCHC | 2 cut(s) | 551, 746 |
| Bsp1407I | TGTACA | 1 cut(s) | 485 |
| Bsp143I | GATC | 2 cut(s) | 93, 498 |
| BspACI | CCGC | 2 cut(s) | 647, 1033 |
| BspANI | GGCC | 2 cut(s) | 206, 1032 |
| BspCNI | CTCAG | 2 cut(s) | 601, 655 |
| BspHI | TCATGA | 1 cut(s) | 942 |
| BspLI | GGNNCC | 3 cut(s) | 579, 783, 956 |
| BspQI | GCTCTTC | 2 cut(s) | 267, 989 |
| BspT104I | TTCGAA | 2 cut(s) | 19, 380 |
| BspT107I | GGYRCC | 1 cut(s) | 954 |
| BspTNI | GGTCTC | 1 cut(s) | 40 |
| BsrDI | GCAATG | 1 cut(s) | 779 |
| BsrGI | TGTACA | 1 cut(s) | 485 |
| BsrI | ACTGG | 1 cut(s) | 60 |
| BssECI | CCNNGG | 3 cut(s) | 223, 440, 785 |
| BssMI | GATC | 2 cut(s) | 93, 498 |
| BssT1I | CCWWGG | 2 cut(s) | 440, 785 |
| Bst2UI | CCWGG | 1 cut(s) | 225 |
| Bst6I | CTCTTC | 3 cut(s) | 267, 884, 989 |
| BstAUI | TGTACA | 1 cut(s) | 485 |
| BstBAI | YACGTR | 1 cut(s) | 508 |
| BstBI | TTCGAA | 2 cut(s) | 19, 380 |
| BstC8I | GCNNGC | 2 cut(s) | 742, 792 |
| BstDEI | CTNAG | 4 cut(s) | 287, 435, 609, 663 |
| BstF5I | GGATG | 3 cut(s) | 512, 705, 838 |
| BstHHI | GCGC | 3 cut(s) | 428, 772, 874 |
| BstKTI | GATC | 2 cut(s) | 96, 501 |
| BstMAI | GTCTC | 1 cut(s) | 40 |
| BstMBI | GATC | 2 cut(s) | 93, 498 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 978 |
| BstNI | CCWGG | 1 cut(s) | 225 |
| BstNSI | RCATGY | 1 cut(s) | 794 |
| BstSCI | CCNGG | 2 cut(s) | 223, 695 |
| BstSFI | CTRYAG | 1 cut(s) | 973 |
| BstSLI | GKGCMC | 2 cut(s) | 551, 746 |
| BstV2I | GAAGAC | 1 cut(s) | 114 |
| Bsu36I | CCTNAGG | 1 cut(s) | 609 |
| BsuRI | GGCC | 2 cut(s) | 206, 1032 |
| BtsCI | GGATG | 3 cut(s) | 512, 705, 838 |
| Cac8I | GCNNGC | 2 cut(s) | 742, 792 |
| CciI | TCATGA | 1 cut(s) | 942 |
| CfoI | GCGC | 3 cut(s) | 428, 772, 874 |
| Cfr13I | GGNCC | 1 cut(s) | 84 |
| CpoI | CGGWCCG | 1 cut(s) | 84 |
| Csp6I | GTAC | 1 cut(s) | 486 |
| CspI | CGGWCCG | 1 cut(s) | 84 |
| CviAII | CATG | 4 cut(s) | 103, 496, 791, 943 |
| CviJI | RGCY | 7 cut(s) | 206, 277, 433, 439, 520, 580, 1032 |
| CviKI_1 | RGCY | 7 cut(s) | 206, 277, 433, 439, 520, 580, 1032 |
| CviQI | GTAC | 1 cut(s) | 486 |
| DdeI | CTNAG | 4 cut(s) | 287, 435, 609, 663 |
| DpnI | GATC | 2 cut(s) | 95, 500 |
| DpnII | GATC | 2 cut(s) | 93, 498 |
| Eam1104I | CTCTTC | 3 cut(s) | 267, 884, 989 |
| EarI | CTCTTC | 3 cut(s) | 267, 884, 989 |
| Eco130I | CCWWGG | 2 cut(s) | 440, 785 |
| Eco147I | AGGCCT | 1 cut(s) | 206 |
| Eco31I | GGTCTC | 1 cut(s) | 40 |
| Eco47I | GGWCC | 1 cut(s) | 84 |
| Eco81I | CCTNAGG | 1 cut(s) | 609 |
| Eco88I | CYCGRG | 1 cut(s) | 656 |
| EcoRI | GAATTC | 1 cut(s) | 382 |
| EcoRII | CCWGG | 1 cut(s) | 223 |
| EcoT14I | CCWWGG | 2 cut(s) | 440, 785 |
| ErhI | CCWWGG | 2 cut(s) | 440, 785 |
| FaeI | CATG | 4 cut(s) | 106, 499, 794, 946 |
| FaqI | GGGAC | 3 cut(s) | 58, 882, 1002 |
| FatI | CATG | 4 cut(s) | 102, 495, 790, 942 |
| FbaI | TGATCA | 1 cut(s) | 498 |
| Fnu4HI | GCNGC | 1 cut(s) | 1033 |
| FokI | GGATG | 3 cut(s) | 499, 712, 845 |
| Fsp4HI | GCNGC | 1 cut(s) | 1033 |
| FspBI | CTAG | 1 cut(s) | 441 |
| FspI | TGCGCA | 2 cut(s) | 771, 873 |
| GlaI | GCGC | 3 cut(s) | 427, 771, 873 |
| GluI | GCNGC | 1 cut(s) | 1033 |
| GsaI | CCCAGC | 1 cut(s) | 798 |
| GsuI | CTGGAG | 2 cut(s) | 77, 596 |
| HaeIII | GGCC | 2 cut(s) | 206, 1032 |
| HapII | CCGG | 2 cut(s) | 581, 696 |
| HhaI | GCGC | 3 cut(s) | 428, 772, 874 |
| Hin1II | CATG | 4 cut(s) | 106, 499, 794, 946 |
| Hin6I | GCGC | 3 cut(s) | 426, 770, 872 |
| HinP1I | GCGC | 3 cut(s) | 426, 770, 872 |
| HindIII | AAGCTT | 1 cut(s) | 518 |
| HinfI | GANTC | 7 cut(s) | 36, 194, 374, 401, 449, 598, 652 |
| HpaII | CCGG | 2 cut(s) | 581, 696 |
| HphI | GGTGA | 1 cut(s) | 661 |
| Hpy166II | GTNNAC | 1 cut(s) | 100 |
| Hpy188I | TCNGA | 7 cut(s) | 247, 317, 559, 597, 664, 819, 928 |
| Hpy188III | TCNNGA | 4 cut(s) | 43, 97, 524, 943 |
| Hpy8I | GTNNAC | 1 cut(s) | 100 |
| Hpy99I | CGWCG | 1 cut(s) | 145 |
| HpyAV | CCTTC | 1 cut(s) | 923 |
| HpyCH4IV | ACGT | 2 cut(s) | 507, 987 |
| HpyCH4V | TGCA | 4 cut(s) | 495, 564, 635, 777 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 978 |
| HpyF3I | CTNAG | 4 cut(s) | 287, 435, 609, 663 |
| HpySE526I | ACGT | 2 cut(s) | 507, 987 |
| Hsp92II | CATG | 4 cut(s) | 106, 499, 794, 946 |
| HspAI | GCGC | 3 cut(s) | 426, 770, 872 |
| Ksp22I | TGATCA | 1 cut(s) | 498 |
| Kzo9I | GATC | 2 cut(s) | 93, 498 |
| LguI | GCTCTTC | 2 cut(s) | 267, 989 |
| LmnI | GCTCC | 2 cut(s) | 577, 698 |
| LweI | GCATC | 2 cut(s) | 521, 968 |
| MaeI | CTAG | 1 cut(s) | 441 |
| MaeII | ACGT | 2 cut(s) | 507, 987 |
| MaeIII | GTNAC | 1 cut(s) | 358 |
| MalI | GATC | 2 cut(s) | 95, 500 |
| MboI | GATC | 2 cut(s) | 93, 498 |
| MboII | GAAGA | 6 cut(s) | 119, 284, 336, 369, 901, 1006 |
| MfeI | CAATTG | 1 cut(s) | 1021 |
| MhlI | GDGCHC | 2 cut(s) | 551, 746 |
| MluCI | AATT | 7 cut(s) | 15, 186, 229, 382, 388, 748, 1021 |
| MlyI | GAGTC | 3 cut(s) | 203, 395, 458 |
| MmeI | TCCRAC | 1 cut(s) | 734 |
| MroXI | GAANNNNTTC | 1 cut(s) | 149 |
| MseI | TTAA | 4 cut(s) | 180, 189, 543, 684 |
| MslI | CAYNNNNRTG | 1 cut(s) | 412 |
| MspA1I | CMGCKG | 1 cut(s) | 1035 |
| MspI | CCGG | 2 cut(s) | 581, 696 |
| MspR9I | CCNGG | 2 cut(s) | 225, 697 |
| MunI | CAATTG | 1 cut(s) | 1021 |
| MvaI | CCWGG | 1 cut(s) | 225 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 978 |
| NciI | CCSGG | 1 cut(s) | 697 |
| NdeII | GATC | 2 cut(s) | 93, 498 |
| NlaIII | CATG | 4 cut(s) | 106, 499, 794, 946 |
| NlaIV | GGNNCC | 3 cut(s) | 579, 783, 956 |
| NmeAIII | GCCGAG | 1 cut(s) | 454 |
| NsbI | TGCGCA | 2 cut(s) | 771, 873 |
| NspI | RCATGY | 1 cut(s) | 794 |
| NspV | TTCGAA | 2 cut(s) | 19, 380 |
| PaeI | GCATGC | 1 cut(s) | 794 |
| PagI | TCATGA | 1 cut(s) | 942 |
| PceI | AGGCCT | 1 cut(s) | 206 |
| PciSI | GCTCTTC | 2 cut(s) | 267, 989 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 737 |
| PdmI | GAANNNNTTC | 1 cut(s) | 149 |
| PfeI | GAWTC | 4 cut(s) | 36, 374, 598, 652 |
| PfoI | TCCNGGA | 1 cut(s) | 695 |
| PkrI | GCNGC | 1 cut(s) | 1034 |
| PleI | GAGTC | 3 cut(s) | 202, 395, 457 |
| PpsI | GAGTC | 3 cut(s) | 202, 395, 457 |
| Ppu21I | YACGTR | 1 cut(s) | 508 |
| Psp6I | CCWGG | 1 cut(s) | 223 |
| PspFI | CCCAGC | 1 cut(s) | 794 |
| PspGI | CCWGG | 1 cut(s) | 223 |
| PspN4I | GGNNCC | 3 cut(s) | 579, 783, 956 |
| PspPI | GGNCC | 1 cut(s) | 84 |
| RsaI | GTAC | 1 cut(s) | 487 |
| RsaNI | GTAC | 1 cut(s) | 486 |
| RseI | CAYNNNNRTG | 1 cut(s) | 412 |
| Rsr2I | CGGWCCG | 1 cut(s) | 84 |
| RsrII | CGGWCCG | 1 cut(s) | 84 |
| SapI | GCTCTTC | 2 cut(s) | 267, 989 |
| SaqAI | TTAA | 4 cut(s) | 180, 189, 543, 684 |
| SatI | GCNGC | 1 cut(s) | 1033 |
| Sau3AI | GATC | 2 cut(s) | 93, 498 |
| Sau96I | GGNCC | 1 cut(s) | 84 |
| SchI | GAGTC | 3 cut(s) | 203, 395, 458 |
| ScrFI | CCNGG | 2 cut(s) | 225, 697 |
| SduI | GDGCHC | 2 cut(s) | 551, 746 |
| SfaNI | GCATC | 2 cut(s) | 521, 968 |
| SfcI | CTRYAG | 1 cut(s) | 973 |
| SfuI | TTCGAA | 2 cut(s) | 19, 380 |
| SinI | GGWCC | 1 cut(s) | 84 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 412 |
| SphI | GCATGC | 1 cut(s) | 794 |
| Sse9I | AATT | 7 cut(s) | 15, 186, 229, 382, 388, 748, 1021 |
| SseBI | AGGCCT | 1 cut(s) | 206 |
| SsiI | CCGC | 2 cut(s) | 647, 1033 |
| SspI | AATATT | 1 cut(s) | 307 |
| SspMI | CTAG | 1 cut(s) | 441 |
| StuI | AGGCCT | 1 cut(s) | 206 |
| StyD4I | CCNGG | 2 cut(s) | 223, 695 |
| StyI | CCWWGG | 2 cut(s) | 440, 785 |
| TaiI | ACGT | 2 cut(s) | 510, 990 |
| TaqI | TCGA | 7 cut(s) | 19, 143, 162, 237, 295, 380, 810 |
| TaqII | GACCGA | 1 cut(s) | 101 |
| TasI | AATT | 7 cut(s) | 15, 186, 229, 382, 388, 748, 1021 |
| TatI | WGTACW | 1 cut(s) | 485 |
| TauI | GCSGC | 1 cut(s) | 1035 |
| TfiI | GAWTC | 4 cut(s) | 36, 374, 598, 652 |
| Tru1I | TTAA | 4 cut(s) | 180, 189, 543, 684 |
| Tru9I | TTAA | 4 cut(s) | 180, 189, 543, 684 |
| TspDTI | ATGAA | 7 cut(s) | 28, 223, 264, 272, 285, 468, 931 |
| TspGWI | ACGGA | 1 cut(s) | 97 |
| VpaK11BI | GGWCC | 1 cut(s) | 84 |
| XapI | RAATTY | 2 cut(s) | 15, 382 |
| XceI | RCATGY | 1 cut(s) | 794 |
| XmaJI | CCTAGG | 1 cut(s) | 440 |
| XmnI | GAANNNNTTC | 1 cut(s) | 149 |
| XspI | CTAG | 1 cut(s) | 441 |