FvH4_1g09490

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
5086486 .. 5088766
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09490.t1

Sequence Viewer

Length: 1038 bp
ATGACAATGTTCAAAATTCGAAGTAGGAGTAGGAGATTCATCAGGAGACCCAAACTGGAGGAGAAAGTAGTGTCCCTATCACGGACCGATGAGATCGTGAACATGGAAGACGATGTGCTTTGCTTCACACCAAAGAGGTCGTCGAACAACTTCAATGTTGTCGATGAGAACAGAAACCTTAAATCAATTAAGGAGTCTATCAAGGCCTCTATTCTCAAATCCCCAGGTAATTTCATCGACCTTTCTGATGAAACTATGAACTATGATGATGAAGAGCTTGAAGTTCTAAGGGTTCGACCCCGAAATATTACATTCGGAAAGCGAAGAAATAAACCCAAACCCTTTAGTGGTCATTCTGTAACCGAATATGGGGAATCTTCGAATTCCAATTCCAAAAAGGACTCATCATTTTTATGTGAAATCTGCGCCGAGCCTAAGCCTAGGAATGAGTCATTTGGTATAAAAGGTTGTAGTCATTCATATTGTACAGAGTGCATGATCAAATACGTGGCATCCAAGCTTCAAGAAAACATTACAAACATTAAGTGCCCTGTTTCTGATTGCAAAGGGTTGCTGGAGCCGGAGTATTGCCGTCCGATTCTGCCACCTGAGGTGTTTGAGAGGTGGGGAAGTGCATTGTGTGAGGCGGTGATTCTCGGGTCTGAGAAGTTTTACTGCCCCTTTAAGGATTGCTCCGGGATGTTGATTGATGATGGGAAAGAGGTCATAACGCAATCGGCGTGCCCTAATTGTTGGAGAATGTTTTGTGCGCAATGCAAGGTTCCTTGGCATGCTGGGATTGACTGCTTCGAGTTTCAGAAGTTGAACAAGGATGAGAGGGGAAAAGAGGATATTATGTTGAGAAAACTTGCGCAAAAGAAAAGGTGGAAGAGATGTCCCAAGTGTAGGTTTTATGTGGAAAAATCAGAAGGTTGCCCGTTCATGAGGTGTAGGTGCCAAACTACTTTCTGCTATAGATGCGAACACGTTTTGAAGAGCGACCATAATCACTATTGTCCCAATTGTAAAGGCCGCTGA

Protein Analysis

346

Amino Acids

40.07

Weight (kDa)

8.82

Isoelectric Point (pI)

60.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 219 - 269 2e-09 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 771, 873
AccB1I GGYRCC 1 cut(s) 954
AciI CCGC 2 cut(s) 647, 1033
AcsI RAATTY 2 cut(s) 15, 382
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 5 cut(s) 81, 347, 369, 685, 906
AflIII ACRYGT 1 cut(s) 985
AgsI TTSAA 6 cut(s) 13, 154, 281, 524, 826, 994
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 2 cut(s) 277, 520
AluI AGCT 2 cut(s) 277, 520
Alw26I GTCTC 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 656
AoxI GGCC 2 cut(s) 204, 1030
ApoI RAATTY 2 cut(s) 15, 382
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
Asp700I GAANNNNTTC 1 cut(s) 149
AspA2I CCTAGG 1 cut(s) 440
AspLEI GCGC 3 cut(s) 428, 772, 874
AspS9I GGNCC 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 697
AsuHPI GGTGA 1 cut(s) 661
AsuII TTCGAA 2 cut(s) 19, 380
AvaI CYCGRG 1 cut(s) 656
AvaII GGWCC 1 cut(s) 84
AvrII CCTAGG 1 cut(s) 440
AxyI CCTNAGG 1 cut(s) 609
BaeGI GKGCMC 2 cut(s) 551, 746
BanI GGYRCC 1 cut(s) 954
BbsI GAAGAC 1 cut(s) 114
BccI CCATC 1 cut(s) 707
BceAI ACGGC 1 cut(s) 576
BciT130I CCWGG 1 cut(s) 225
BclI TGATCA 1 cut(s) 498
BcnI CCSGG 1 cut(s) 697
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 973
BisI GCNGC 1 cut(s) 1033
BlnI CCTAGG 1 cut(s) 440
BlsI GCNGC 1 cut(s) 1034
Bme1390I CCNGG 2 cut(s) 225, 697
Bme18I GGWCC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 3 cut(s) 579, 783, 956
BmrFI CCNGG 2 cut(s) 225, 697
BmsI GCATC 2 cut(s) 521, 968
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 2 cut(s) 77, 596
Bpu10I CCTNAGC 1 cut(s) 435
Bpu14I TTCGAA 2 cut(s) 19, 380
BpuMI CCSGG 1 cut(s) 697
BsaAI YACGTR 1 cut(s) 508
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 223, 440, 785
BsaXI ACNNNNNCTCC 2 cut(s) 569, 599
Bsc4I CCNNNNNNNGG 5 cut(s) 81, 347, 369, 685, 906
Bse1I ACTGG 1 cut(s) 60
Bse21I CCTNAGG 1 cut(s) 609
Bse3DI GCAATG 1 cut(s) 779
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 3 cut(s) 223, 440, 785
BseGI GGATG 3 cut(s) 512, 705, 838
BseLI CCNNNNNNNGG 5 cut(s) 81, 347, 369, 685, 906
BseMI GCAATG 1 cut(s) 779
BseMII CTCAG 2 cut(s) 600, 654
BseNI ACTGG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 2 cut(s) 551, 746
BseYI CCCAGC 1 cut(s) 794
BshFI GGCC 2 cut(s) 206, 1032
BshNI GGYRCC 1 cut(s) 954
BsiHKCI CYCGRG 1 cut(s) 656
BsiSI CCGG 2 cut(s) 581, 696
BslFI GGGAC 3 cut(s) 58, 882, 1002
BslI CCNNNNNNNGG 5 cut(s) 81, 347, 369, 685, 906
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 3 cut(s) 58, 882, 1002
BsnI GGCC 2 cut(s) 206, 1032
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 656
Bsp119I TTCGAA 2 cut(s) 19, 380
Bsp1286I GDGCHC 2 cut(s) 551, 746
Bsp1407I TGTACA 1 cut(s) 485
Bsp143I GATC 2 cut(s) 93, 498
BspACI CCGC 2 cut(s) 647, 1033
BspANI GGCC 2 cut(s) 206, 1032
BspCNI CTCAG 2 cut(s) 601, 655
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 3 cut(s) 579, 783, 956
BspQI GCTCTTC 2 cut(s) 267, 989
BspT104I TTCGAA 2 cut(s) 19, 380
BspT107I GGYRCC 1 cut(s) 954
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 779
BsrGI TGTACA 1 cut(s) 485
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 3 cut(s) 223, 440, 785
BssMI GATC 2 cut(s) 93, 498
BssT1I CCWWGG 2 cut(s) 440, 785
Bst2UI CCWGG 1 cut(s) 225
Bst6I CTCTTC 3 cut(s) 267, 884, 989
BstAUI TGTACA 1 cut(s) 485
BstBAI YACGTR 1 cut(s) 508
BstBI TTCGAA 2 cut(s) 19, 380
BstC8I GCNNGC 2 cut(s) 742, 792
BstDEI CTNAG 4 cut(s) 287, 435, 609, 663
BstF5I GGATG 3 cut(s) 512, 705, 838
BstHHI GCGC 3 cut(s) 428, 772, 874
BstKTI GATC 2 cut(s) 96, 501
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 93, 498
BstMWI GCNNNNNNNGC 1 cut(s) 978
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 794
BstSCI CCNGG 2 cut(s) 223, 695
BstSFI CTRYAG 1 cut(s) 973
BstSLI GKGCMC 2 cut(s) 551, 746
BstV2I GAAGAC 1 cut(s) 114
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 2 cut(s) 206, 1032
BtsCI GGATG 3 cut(s) 512, 705, 838
Cac8I GCNNGC 2 cut(s) 742, 792
CciI TCATGA 1 cut(s) 942
CfoI GCGC 3 cut(s) 428, 772, 874
Cfr13I GGNCC 1 cut(s) 84
CpoI CGGWCCG 1 cut(s) 84
Csp6I GTAC 1 cut(s) 486
CspI CGGWCCG 1 cut(s) 84
CviAII CATG 4 cut(s) 103, 496, 791, 943
CviJI RGCY 7 cut(s) 206, 277, 433, 439, 520, 580, 1032
CviKI_1 RGCY 7 cut(s) 206, 277, 433, 439, 520, 580, 1032
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 4 cut(s) 287, 435, 609, 663
DpnI GATC 2 cut(s) 95, 500
DpnII GATC 2 cut(s) 93, 498
Eam1104I CTCTTC 3 cut(s) 267, 884, 989
EarI CTCTTC 3 cut(s) 267, 884, 989
Eco130I CCWWGG 2 cut(s) 440, 785
Eco147I AGGCCT 1 cut(s) 206
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 84
Eco81I CCTNAGG 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 440, 785
ErhI CCWWGG 2 cut(s) 440, 785
FaeI CATG 4 cut(s) 106, 499, 794, 946
FaqI GGGAC 3 cut(s) 58, 882, 1002
FatI CATG 4 cut(s) 102, 495, 790, 942
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 1 cut(s) 1033
FokI GGATG 3 cut(s) 499, 712, 845
Fsp4HI GCNGC 1 cut(s) 1033
FspBI CTAG 1 cut(s) 441
FspI TGCGCA 2 cut(s) 771, 873
GlaI GCGC 3 cut(s) 427, 771, 873
GluI GCNGC 1 cut(s) 1033
GsaI CCCAGC 1 cut(s) 798
GsuI CTGGAG 2 cut(s) 77, 596
HaeIII GGCC 2 cut(s) 206, 1032
HapII CCGG 2 cut(s) 581, 696
HhaI GCGC 3 cut(s) 428, 772, 874
Hin1II CATG 4 cut(s) 106, 499, 794, 946
Hin6I GCGC 3 cut(s) 426, 770, 872
HinP1I GCGC 3 cut(s) 426, 770, 872
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 7 cut(s) 36, 194, 374, 401, 449, 598, 652
HpaII CCGG 2 cut(s) 581, 696
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 7 cut(s) 247, 317, 559, 597, 664, 819, 928
Hpy188III TCNNGA 4 cut(s) 43, 97, 524, 943
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 923
HpyCH4IV ACGT 2 cut(s) 507, 987
HpyCH4V TGCA 4 cut(s) 495, 564, 635, 777
HpyF10VI GCNNNNNNNGC 1 cut(s) 978
HpyF3I CTNAG 4 cut(s) 287, 435, 609, 663
HpySE526I ACGT 2 cut(s) 507, 987
Hsp92II CATG 4 cut(s) 106, 499, 794, 946
HspAI GCGC 3 cut(s) 426, 770, 872
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 2 cut(s) 93, 498
LguI GCTCTTC 2 cut(s) 267, 989
LmnI GCTCC 2 cut(s) 577, 698
LweI GCATC 2 cut(s) 521, 968
MaeI CTAG 1 cut(s) 441
MaeII ACGT 2 cut(s) 507, 987
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 95, 500
MboI GATC 2 cut(s) 93, 498
MboII GAAGA 6 cut(s) 119, 284, 336, 369, 901, 1006
MfeI CAATTG 1 cut(s) 1021
MhlI GDGCHC 2 cut(s) 551, 746
MluCI AATT 7 cut(s) 15, 186, 229, 382, 388, 748, 1021
MlyI GAGTC 3 cut(s) 203, 395, 458
MmeI TCCRAC 1 cut(s) 734
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 4 cut(s) 180, 189, 543, 684
MslI CAYNNNNRTG 1 cut(s) 412
MspA1I CMGCKG 1 cut(s) 1035
MspI CCGG 2 cut(s) 581, 696
MspR9I CCNGG 2 cut(s) 225, 697
MunI CAATTG 1 cut(s) 1021
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 978
NciI CCSGG 1 cut(s) 697
NdeII GATC 2 cut(s) 93, 498
NlaIII CATG 4 cut(s) 106, 499, 794, 946
NlaIV GGNNCC 3 cut(s) 579, 783, 956
NmeAIII GCCGAG 1 cut(s) 454
NsbI TGCGCA 2 cut(s) 771, 873
NspI RCATGY 1 cut(s) 794
NspV TTCGAA 2 cut(s) 19, 380
PaeI GCATGC 1 cut(s) 794
PagI TCATGA 1 cut(s) 942
PceI AGGCCT 1 cut(s) 206
PciSI GCTCTTC 2 cut(s) 267, 989
PcsI WCGNNNNNNNCGW 1 cut(s) 737
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 4 cut(s) 36, 374, 598, 652
PfoI TCCNGGA 1 cut(s) 695
PkrI GCNGC 1 cut(s) 1034
PleI GAGTC 3 cut(s) 202, 395, 457
PpsI GAGTC 3 cut(s) 202, 395, 457
Ppu21I YACGTR 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 794
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 3 cut(s) 579, 783, 956
PspPI GGNCC 1 cut(s) 84
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 412
Rsr2I CGGWCCG 1 cut(s) 84
RsrII CGGWCCG 1 cut(s) 84
SapI GCTCTTC 2 cut(s) 267, 989
SaqAI TTAA 4 cut(s) 180, 189, 543, 684
SatI GCNGC 1 cut(s) 1033
Sau3AI GATC 2 cut(s) 93, 498
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 3 cut(s) 203, 395, 458
ScrFI CCNGG 2 cut(s) 225, 697
SduI GDGCHC 2 cut(s) 551, 746
SfaNI GCATC 2 cut(s) 521, 968
SfcI CTRYAG 1 cut(s) 973
SfuI TTCGAA 2 cut(s) 19, 380
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 412
SphI GCATGC 1 cut(s) 794
Sse9I AATT 7 cut(s) 15, 186, 229, 382, 388, 748, 1021
SseBI AGGCCT 1 cut(s) 206
SsiI CCGC 2 cut(s) 647, 1033
SspI AATATT 1 cut(s) 307
SspMI CTAG 1 cut(s) 441
StuI AGGCCT 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 223, 695
StyI CCWWGG 2 cut(s) 440, 785
TaiI ACGT 2 cut(s) 510, 990
TaqI TCGA 7 cut(s) 19, 143, 162, 237, 295, 380, 810
TaqII GACCGA 1 cut(s) 101
TasI AATT 7 cut(s) 15, 186, 229, 382, 388, 748, 1021
TatI WGTACW 1 cut(s) 485
TauI GCSGC 1 cut(s) 1035
TfiI GAWTC 4 cut(s) 36, 374, 598, 652
Tru1I TTAA 4 cut(s) 180, 189, 543, 684
Tru9I TTAA 4 cut(s) 180, 189, 543, 684
TspDTI ATGAA 7 cut(s) 28, 223, 264, 272, 285, 468, 931
TspGWI ACGGA 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 2 cut(s) 15, 382
XceI RCATGY 1 cut(s) 794
XmaJI CCTAGG 1 cut(s) 440
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.