Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

688098 .. 688944

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28273

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCGTCAAGCATTTGGAGCTCATGAAATGAAGAAAGACGATCAACCTCTCAGGAATCAATTTAGCGATACCCTGAAATCCGCCCCGAGTCCCGCTAAACCAGGTAACTTCATTGATCTCTCTGCTGAAACCCTAAACTATTACGATAGTGATGAAGAGGTTAGGGTTCTTAGGTTCAAACCCTCCAATATCTCTTTTGGGAAAATCAAGCGAATAAAAACCTCAAACGAGGGTTCTTGTTCTACTTCCAAGGCCCCATCTTTTGTTTGTGAAATTTGTGTGGAGACCAAGCCGGCACACGAATCGTTTGGTATCAAAAATTGCAGCCATGTAACCCATGTTTTTTGTACTGATTGTGTGGTCAAATATGTGGACTCGAAGCTCCAAGAAAATATAGCAAGCATTGGGTGCCTTGTACCCGATTGCAAAGGGTCACTGGATCCCGAGTATTGCCATTCGATTCTGAAACCCGAGGTGTTTGAAAAATGGGGGACAAGGTTGTGCGAGGATGTGATTATTGGATCTCAGAAATTTTACTGCCCCTTTAAGGACTGCTCAGCAATGTTGATCGACGATGGGACAGAGGTAGTGAGAGAATCAGAGTGCCCTAACTGTAAAAGATTGTTCTGTGCGCAGTGTAAGAGGTGGAATAAGGATGATACTGAAAAGGATGATCTTGTTATGGAGAAACTTGCTTACAAGAAGCACTGGAGAAAGTGCCCAACGTGTGGGATCTATGTAGAAAGATCAGGAGGCTGCACAACAATACGATGCAGGTCTGTTTATCTTTCTGCTCTCTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

268

Amino Acids

30.34

Weight (kDa)

7.75

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	633
Acc36I	ACCTGC	1 cut(s)	765
AccB1I	GGYRCC	1 cut(s)	408
AccB7I	CCANNNNNTGG	1 cut(s)	728
AciI	CCGC	2 cut(s)	81, 93
AclWI	GGATC	4 cut(s)	434, 447, 529, 740
AcsI	RAATTY	2 cut(s)	273, 530
AfaI	GTAC	2 cut(s)	349, 417
AfiI	CCNNNNNNNGG	2 cut(s)	547, 728
AflIII	ACRYGT	1 cut(s)	725
AgsI	TTSAA	2 cut(s)	178, 482
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	20, 382
AluI	AGCT	2 cut(s)	20, 382
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	4 cut(s)	434, 447, 529, 740
Ama87I	CYCGRG	3 cut(s)	85, 443, 470
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	324, 756
ApoI	RAATTY	2 cut(s)	273, 530
AspLEI	GCGC	1 cut(s)	634
AspS9I	GGNCC	1 cut(s)	253
AvaI	CYCGRG	3 cut(s)	85, 443, 470
BaeGI	GKGCMC	2 cut(s)	608, 722
BamHI	GGATCC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	336, 743
BccI	CCATC	2 cut(s)	265, 569
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	765
BisI	GCNGC	2 cut(s)	325, 757
BlpI	GCTNAGC	1 cut(s)	556
BlsI	GCNGC	2 cut(s)	326, 758
Bme1390I	CCNGG	1 cut(s)	102
BmeT110I	CYCGRG	3 cut(s)	85, 443, 470
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	3 cut(s)	255, 410, 441
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	761
BpmI	CTGGAG	1 cut(s)	730
Bpu1102I	GCTNAGC	1 cut(s)	556
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	249, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	547, 728
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	441, 713
Bse3DI	GCAATG	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	249, 471
BseGI	GGATG	3 cut(s)	514, 661, 676
BseLI	CCNNNNNNNGG	2 cut(s)	547, 728
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	3 cut(s)	64, 539, 570
BseNI	ACTGG	2 cut(s)	441, 713
BseSI	GKGCMC	2 cut(s)	608, 722
BseXI	GCAGC	2 cut(s)	336, 743
BsgI	GTGCAG	1 cut(s)	742
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	22
BsiHKCI	CYCGRG	3 cut(s)	85, 443, 470
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	3 cut(s)	75, 505, 592
BslI	CCNNNNNNNGG	2 cut(s)	547, 728
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	3 cut(s)	75, 505, 592
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	3 cut(s)	85, 443, 470
Bsp1286I	GDGCHC	3 cut(s)	22, 608, 722
Bsp143I	GATC	8 cut(s)	40, 115, 439, 521, 567, 673, 732, 746
Bsp1720I	GCTNAGC	1 cut(s)	556
BspACI	CCGC	2 cut(s)	81, 93
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	3 cut(s)	63, 538, 569
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	255, 410, 441
BspMI	ACCTGC	1 cut(s)	765
BspPI	GGATC	4 cut(s)	434, 447, 529, 740
BspT107I	GGYRCC	1 cut(s)	408
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	441, 713
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	249, 471
BssMI	GATC	8 cut(s)	40, 115, 439, 521, 567, 673, 732, 746
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	614
Bst6I	CTCTTC	2 cut(s)	150, 803
BstAPI	GCANNNNNTGC	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	294, 400
BstDEI	CTNAG	4 cut(s)	50, 170, 525, 556
BstF5I	GGATG	3 cut(s)	514, 661, 676
BstHHI	GCGC	1 cut(s)	634
BstKTI	GATC	8 cut(s)	43, 118, 442, 524, 570, 676, 735, 749
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	8 cut(s)	40, 115, 439, 521, 567, 673, 732, 746
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 408
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstSLI	GKGCMC	2 cut(s)	608, 722
BstV1I	GCAGC	2 cut(s)	336, 743
BstX2I	RGATCY	3 cut(s)	439, 521, 732
BstYI	RGATCY	3 cut(s)	439, 521, 732
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	514, 661, 676
BtsI	GCAGTG	1 cut(s)	641
BtsIMutI	CAGTG	3 cut(s)	434, 641, 706
BveI	ACCTGC	1 cut(s)	765
Cac8I	GCNNGC	2 cut(s)	294, 400
CciI	TCATGA	1 cut(s)	22
CfoI	GCGC	1 cut(s)	634
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	253
CsiI	ACCWGGT	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	348, 416
CviAII	CATG	3 cut(s)	23, 329, 338
CviJI	RGCY	6 cut(s)	20, 254, 292, 327, 382, 756
CviKI_1	RGCY	6 cut(s)	20, 254, 292, 327, 382, 756
CviQI	GTAC	2 cut(s)	348, 416
DdeI	CTNAG	4 cut(s)	50, 170, 525, 556
DpnI	GATC	8 cut(s)	42, 117, 441, 523, 569, 675, 734, 748
DpnII	GATC	8 cut(s)	40, 115, 439, 521, 567, 673, 732, 746
Eam1104I	CTCTTC	2 cut(s)	150, 803
EarI	CTCTTC	2 cut(s)	150, 803
EciI	GGCGGA	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	20
Eco88I	CYCGRG	3 cut(s)	85, 443, 470
EcoICRI	GAGCTC	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	3 cut(s)	26, 332, 341
FaiI	YATR	7 cut(s)	24, 330, 339, 369, 395, 683, 738
FaqI	GGGAC	3 cut(s)	75, 505, 592
FatI	CATG	3 cut(s)	22, 328, 337
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	325, 757
FokI	GGATG	3 cut(s)	521, 668, 683
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	325, 757
FspI	TGCGCA	1 cut(s)	633
GlaI	GCGC	1 cut(s)	633
GluI	GCNGC	2 cut(s)	325, 757
GsuI	CTGGAG	1 cut(s)	730
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	1 cut(s)	634
Hin1II	CATG	3 cut(s)	26, 332, 341
Hin6I	GCGC	1 cut(s)	632
HinP1I	GCGC	1 cut(s)	632
HinfI	GANTC	6 cut(s)	55, 88, 302, 374, 460, 596
HpaII	CCGG	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	465, 528, 601
Hpy188III	TCNNGA	4 cut(s)	23, 52, 443, 750
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	575
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	4 cut(s)	324, 426, 759, 774
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 408
HpyF3I	CTNAG	4 cut(s)	50, 170, 525, 556
HpySE526I	ACGT	1 cut(s)	725
Hsp92II	CATG	3 cut(s)	26, 332, 341
HspAI	GCGC	1 cut(s)	632
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
Kzo9I	GATC	8 cut(s)	40, 115, 439, 521, 567, 673, 732, 746
LmnI	GCTCC	2 cut(s)	17, 387
LpnPI	CCDG	9 cut(s)	37, 86, 87, 114, 306, 422, 694, 735, 760
Lsp1109I	GCAGC	2 cut(s)	336, 743
LweI	GCATC	1 cut(s)	761
MabI	ACCWGGT	1 cut(s)	100
MaeII	ACGT	1 cut(s)	725
MaeIII	GTNAC	3 cut(s)	104, 331, 432
MalI	GATC	8 cut(s)	42, 117, 441, 523, 569, 675, 734, 748
MboI	GATC	8 cut(s)	40, 115, 439, 521, 567, 673, 732, 746
MboII	GAAGA	3 cut(s)	43, 167, 790
MflI	RGATCY	3 cut(s)	439, 521, 732
MhlI	GDGCHC	3 cut(s)	22, 608, 722
MluCI	AATT	4 cut(s)	59, 273, 319, 530
MlyI	GAGTC	2 cut(s)	97, 368
MroNI	GCCGGC	1 cut(s)	292
MseI	TTAA	1 cut(s)	546
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	17, 408
NaeI	GCCGGC	1 cut(s)	294
NdeII	GATC	8 cut(s)	40, 115, 439, 521, 567, 673, 732, 746
NgoMIV	GCCGGC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	26, 332, 341
NlaIV	GGNNCC	3 cut(s)	255, 410, 441
NmuCI	GTSAC	1 cut(s)	432
NsbI	TGCGCA	1 cut(s)	633
PagI	TCATGA	1 cut(s)	22
PdiI	GCCGGC	1 cut(s)	294
PfeI	GAWTC	4 cut(s)	55, 302, 460, 596
PflMI	CCANNNNNTGG	1 cut(s)	728
PkrI	GCNGC	2 cut(s)	326, 758
PleI	GAGTC	2 cut(s)	96, 368
PpsI	GAGTC	2 cut(s)	96, 368
Psp124BI	GAGCTC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	3 cut(s)	255, 410, 441
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	3 cut(s)	439, 521, 732
RsaI	GTAC	2 cut(s)	349, 417
RsaNI	GTAC	2 cut(s)	348, 416
SacI	GAGCTC	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	2 cut(s)	325, 757
Sau3AI	GATC	8 cut(s)	40, 115, 439, 521, 567, 673, 732, 746
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	2 cut(s)	97, 368
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	3 cut(s)	22, 608, 722
SexAI	ACCWGGT	1 cut(s)	100
SfaNI	GCATC	1 cut(s)	761
Sse9I	AATT	4 cut(s)	59, 273, 319, 530
SsiI	CCGC	2 cut(s)	81, 93
SstI	GAGCTC	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	614
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	3 cut(s)	377, 458, 570
TasI	AATT	4 cut(s)	59, 273, 319, 530
TatI	WGTACW	1 cut(s)	347
TfiI	GAWTC	4 cut(s)	55, 302, 460, 596
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	3 cut(s)	441, 641, 713
TseFI	GTSAC	1 cut(s)	432
TseI	GCWGC	2 cut(s)	324, 756
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	5 cut(s)	39, 44, 100, 168, 790
TspRI	CASTG	3 cut(s)	441, 641, 713
Van91I	CCANNNNNTGG	1 cut(s)	728
XapI	RAATTY	2 cut(s)	273, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.