E3 ubiquitin-protein ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| IBR | PF01485 | 279 - 335 | 1.5e-09 | IBR domain, a half RING-finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1140 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1191 |
| Acc16I | TGCGCA | 3 cut(s) | 121, 289, 969 |
| Acc36I | ACCTGC | 2 cut(s) | 437, 1140 |
| AccB1I | GGYRCC | 1 cut(s) | 744 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1103 |
| AccII | CGCG | 1 cut(s) | 205 |
| AciI | CCGC | 6 cut(s) | 205, 304, 894, 1021, 1155, 1276 |
| AclWI | GGATC | 4 cut(s) | 327, 770, 1115, 1329 |
| AcsI | RAATTY | 4 cut(s) | 46, 618, 866, 1313 |
| AdeI | CACNNNGTG | 1 cut(s) | 96 |
| AfaI | GTAC | 4 cut(s) | 134, 685, 753, 1262 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 883, 1103, 1202 |
| AflIII | ACRYGT | 1 cut(s) | 1100 |
| AgsI | TTSAA | 7 cut(s) | 46, 191, 481, 523, 818, 1168, 1255 |
| AjnI | CCWGG | 1 cut(s) | 992 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 524, 556 |
| AluBI | AGCT | 4 cut(s) | 194, 362, 718, 1304 |
| AluI | AGCT | 4 cut(s) | 194, 362, 718, 1304 |
| Alw21I | GWGCWC | 2 cut(s) | 9, 364 |
| Alw26I | GTCTC | 6 cut(s) | 218, 300, 303, 623, 864, 1347 |
| AlwI | GGATC | 4 cut(s) | 327, 770, 1115, 1329 |
| Ama87I | CYCGRG | 1 cut(s) | 427 |
| AoxI | GGCC | 1 cut(s) | 914 |
| ApeKI | GCWGC | 2 cut(s) | 443, 1131 |
| ApoI | RAATTY | 4 cut(s) | 46, 618, 866, 1313 |
| AspLEI | GCGC | 4 cut(s) | 122, 290, 970, 1405 |
| AspS9I | GGNCC | 2 cut(s) | 914, 1279 |
| AsuC2I | CCSGG | 2 cut(s) | 1283, 1400 |
| AvaI | CYCGRG | 1 cut(s) | 427 |
| AvaII | GGWCC | 1 cut(s) | 1279 |
| AxyI | CCTNAGG | 1 cut(s) | 392 |
| BaeGI | GKGCMC | 4 cut(s) | 110, 278, 944, 1097 |
| BanI | GGYRCC | 1 cut(s) | 744 |
| BanII | GRGCYC | 1 cut(s) | 364 |
| Bbv12I | GWGCWC | 2 cut(s) | 9, 364 |
| BbvI | GCAGC | 2 cut(s) | 455, 1118 |
| BccI | CCATC | 2 cut(s) | 610, 905 |
| BceAI | ACGGC | 1 cut(s) | 330 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 449, 483, 630, 664, 1134, 1168 |
| BciT130I | CCWGG | 1 cut(s) | 994 |
| BcnI | CCSGG | 2 cut(s) | 1283, 1400 |
| BcoDI | GTCTC | 6 cut(s) | 218, 300, 303, 623, 864, 1347 |
| BfuAI | ACCTGC | 2 cut(s) | 437, 1140 |
| BisI | GCNGC | 2 cut(s) | 444, 1132 |
| BlsI | GCNGC | 2 cut(s) | 445, 1133 |
| Bme1390I | CCNGG | 3 cut(s) | 994, 1283, 1400 |
| Bme18I | GGWCC | 1 cut(s) | 1279 |
| BmeT110I | CYCGRG | 1 cut(s) | 427 |
| BmgT120I | GGNCC | 2 cut(s) | 914, 1279 |
| BmiI | GGNNCC | 4 cut(s) | 746, 981, 1280, 1290 |
| BmrFI | CCNGG | 3 cut(s) | 994, 1283, 1400 |
| BmrI | ACTGGG | 1 cut(s) | 1196 |
| BmsI | GCATC | 2 cut(s) | 164, 1136 |
| BmuI | ACTGGG | 1 cut(s) | 1196 |
| BpmI | CTGGAG | 1 cut(s) | 1105 |
| BpuMI | CCSGG | 2 cut(s) | 1283, 1400 |
| Bsa29I | ATCGAT | 1 cut(s) | 459 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1391 |
| BsaI | GGTCTC | 2 cut(s) | 623, 864 |
| BsaJI | CCNNGG | 2 cut(s) | 983, 1282 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 883, 1103, 1202 |
| Bse118I | RCCGGY | 1 cut(s) | 637 |
| Bse1I | ACTGG | 3 cut(s) | 130, 1088, 1191 |
| Bse21I | CCTNAGG | 1 cut(s) | 392 |
| Bse3DI | GCAATG | 2 cut(s) | 297, 903 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1391 |
| BseBI | CCWGG | 1 cut(s) | 994 |
| BseCI | ATCGAT | 1 cut(s) | 459 |
| BseDI | CCNNGG | 2 cut(s) | 983, 1282 |
| BseGI | GGATG | 1 cut(s) | 1051 |
| BseJI | GATNNNNATC | 1 cut(s) | 1391 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 883, 1103, 1202 |
| BseMI | GCAATG | 2 cut(s) | 297, 903 |
| BseMII | CTCAG | 4 cut(s) | 229, 406, 582, 875 |
| BseNI | ACTGG | 3 cut(s) | 130, 1088, 1191 |
| BseRI | GAGGAG | 1 cut(s) | 92 |
| BseSI | GKGCMC | 4 cut(s) | 110, 278, 944, 1097 |
| BseXI | GCAGC | 2 cut(s) | 455, 1118 |
| BsgI | GTGCAG | 1 cut(s) | 1117 |
| Bsh1236I | CGCG | 1 cut(s) | 205 |
| BshFI | GGCC | 1 cut(s) | 916 |
| BshNI | GGYRCC | 1 cut(s) | 744 |
| BshVI | ATCGAT | 1 cut(s) | 459 |
| BsiHKAI | GWGCWC | 2 cut(s) | 9, 364 |
| BsiHKCI | CYCGRG | 1 cut(s) | 427 |
| BsiSI | CCGG | 4 cut(s) | 178, 638, 1282, 1399 |
| BslFI | GGGAC | 3 cut(s) | 417, 1171, 1292 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 883, 1103, 1202 |
| BsmAI | GTCTC | 6 cut(s) | 218, 300, 303, 623, 864, 1347 |
| BsmFI | GGGAC | 3 cut(s) | 417, 1171, 1292 |
| BsnI | GGCC | 1 cut(s) | 916 |
| Bso31I | GGTCTC | 2 cut(s) | 623, 864 |
| BsoBI | CYCGRG | 1 cut(s) | 427 |
| Bsp1286I | GDGCHC | 6 cut(s) | 9, 110, 278, 364, 944, 1097 |
| BspACI | CCGC | 6 cut(s) | 205, 304, 894, 1021, 1155, 1276 |
| BspANI | GGCC | 1 cut(s) | 916 |
| BspCNI | CTCAG | 4 cut(s) | 228, 405, 581, 874 |
| BspDI | ATCGAT | 1 cut(s) | 459 |
| BspFNI | CGCG | 1 cut(s) | 205 |
| BspHI | TCATGA | 2 cut(s) | 196, 364 |
| BspLI | GGNNCC | 4 cut(s) | 746, 981, 1280, 1290 |
| BspMI | ACCTGC | 2 cut(s) | 437, 1140 |
| BspPI | GGATC | 4 cut(s) | 327, 770, 1115, 1329 |
| BspT107I | GGYRCC | 1 cut(s) | 744 |
| BspTNI | GGTCTC | 2 cut(s) | 623, 864 |
| BsrDI | GCAATG | 2 cut(s) | 297, 903 |
| BsrFI | RCCGGY | 1 cut(s) | 637 |
| BsrI | ACTGG | 3 cut(s) | 130, 1088, 1191 |
| BssAI | RCCGGY | 1 cut(s) | 637 |
| BssECI | CCNNGG | 2 cut(s) | 983, 1282 |
| BssT1I | CCWWGG | 1 cut(s) | 983 |
| Bst2UI | CCWGG | 1 cut(s) | 994 |
| Bst4CI | ACNGT | 1 cut(s) | 273 |
| Bst6I | CTCTTC | 1 cut(s) | 495 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 744 |
| BstC8I | GCNNGC | 3 cut(s) | 639, 736, 990 |
| BstDEI | CTNAG | 5 cut(s) | 215, 392, 515, 568, 861 |
| BstF5I | GGATG | 1 cut(s) | 1051 |
| BstFNI | CGCG | 1 cut(s) | 205 |
| BstHHI | GCGC | 4 cut(s) | 122, 290, 970, 1405 |
| BstMAI | GTCTC | 6 cut(s) | 218, 300, 303, 623, 864, 1347 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 191, 359, 744, 1316 |
| BstNI | CCWGG | 1 cut(s) | 994 |
| BstSCI | CCNGG | 3 cut(s) | 992, 1281, 1398 |
| BstSLI | GKGCMC | 4 cut(s) | 110, 278, 944, 1097 |
| BstUI | CGCG | 1 cut(s) | 205 |
| BstV1I | GCAGC | 2 cut(s) | 455, 1118 |
| BstX2I | RGATCY | 2 cut(s) | 1107, 1334 |
| BstYI | RGATCY | 2 cut(s) | 1107, 1334 |
| Bsu15I | ATCGAT | 1 cut(s) | 459 |
| Bsu36I | CCTNAGG | 1 cut(s) | 392 |
| BsuRI | GGCC | 1 cut(s) | 916 |
| BsuTUI | ATCGAT | 1 cut(s) | 459 |
| BtsCI | GGATG | 1 cut(s) | 1051 |
| BtsI | GCAGTG | 2 cut(s) | 76, 977 |
| BtsIMutI | CAGTG | 4 cut(s) | 76, 278, 977, 1081 |
| BveI | ACCTGC | 2 cut(s) | 437, 1140 |
| Cac8I | GCNNGC | 3 cut(s) | 639, 736, 990 |
| CciI | TCATGA | 2 cut(s) | 196, 364 |
| CfoI | GCGC | 4 cut(s) | 122, 290, 970, 1405 |
| Cfr10I | RCCGGY | 1 cut(s) | 637 |
| Cfr13I | GGNCC | 2 cut(s) | 914, 1279 |
| ClaI | ATCGAT | 1 cut(s) | 459 |
| Csp6I | GTAC | 4 cut(s) | 133, 684, 752, 1261 |
| CviAII | CATG | 5 cut(s) | 139, 197, 365, 674, 1339 |
| CviQI | GTAC | 4 cut(s) | 133, 684, 752, 1261 |
| DdeI | CTNAG | 5 cut(s) | 215, 392, 515, 568, 861 |
| DraIII | CACNNNGTG | 1 cut(s) | 96 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1191 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1191 |
| Eam1104I | CTCTTC | 1 cut(s) | 495 |
| EarI | CTCTTC | 1 cut(s) | 495 |
| EciI | GGCGGA | 1 cut(s) | 1036 |
| Ecl136II | GAGCTC | 1 cut(s) | 362 |
| Eco130I | CCWWGG | 1 cut(s) | 983 |
| Eco24I | GRGCYC | 1 cut(s) | 364 |
| Eco31I | GGTCTC | 2 cut(s) | 623, 864 |
| Eco47I | GGWCC | 1 cut(s) | 1279 |
| Eco53kI | GAGCTC | 1 cut(s) | 362 |
| Eco81I | CCTNAGG | 1 cut(s) | 392 |
| Eco88I | CYCGRG | 1 cut(s) | 427 |
| EcoICRI | GAGCTC | 1 cut(s) | 362 |
| EcoRI | GAATTC | 1 cut(s) | 46 |
| EcoRII | CCWGG | 1 cut(s) | 992 |
| EcoT14I | CCWWGG | 1 cut(s) | 983 |
| EcoT38I | GRGCYC | 1 cut(s) | 364 |
| ErhI | CCWWGG | 1 cut(s) | 983 |
| FaeI | CATG | 5 cut(s) | 142, 200, 368, 677, 1342 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 756, 788 |
| FaqI | GGGAC | 3 cut(s) | 417, 1171, 1292 |
| FatI | CATG | 5 cut(s) | 138, 196, 364, 673, 1338 |
| FauI | CCCGC | 3 cut(s) | 198, 1148, 1269 |
| Fnu4HI | GCNGC | 2 cut(s) | 444, 1132 |
| FokI | GGATG | 1 cut(s) | 1058 |
| FriOI | GRGCYC | 1 cut(s) | 364 |
| Fsp4HI | GCNGC | 2 cut(s) | 444, 1132 |
| FspI | TGCGCA | 3 cut(s) | 121, 289, 969 |
| GlaI | GCGC | 4 cut(s) | 121, 289, 969, 1404 |
| GluI | GCNGC | 2 cut(s) | 444, 1132 |
| GsuI | CTGGAG | 1 cut(s) | 1105 |
| HaeIII | GGCC | 1 cut(s) | 916 |
| HapII | CCGG | 4 cut(s) | 178, 638, 1282, 1399 |
| HhaI | GCGC | 4 cut(s) | 122, 290, 970, 1405 |
| Hin1II | CATG | 5 cut(s) | 142, 200, 368, 677, 1342 |
| Hin6I | GCGC | 4 cut(s) | 120, 288, 968, 1403 |
| HinP1I | GCGC | 4 cut(s) | 120, 288, 968, 1403 |
| HindIII | AAGCTT | 1 cut(s) | 1302 |
| HpaII | CCGG | 4 cut(s) | 178, 638, 1282, 1399 |
| Hpy166II | GTNNAC | 3 cut(s) | 99, 709, 1181 |
| Hpy188I | TCNGA | 8 cut(s) | 52, 150, 164, 339, 571, 864, 937, 1351 |
| Hpy8I | GTNNAC | 3 cut(s) | 99, 709, 1181 |
| Hpy99I | CGWCG | 1 cut(s) | 911 |
| HpyAV | CCTTC | 4 cut(s) | 569, 1249, 1260, 1421 |
| HpyCH4III | ACNGT | 1 cut(s) | 273 |
| HpyCH4IV | ACGT | 1 cut(s) | 1100 |
| HpyCH4V | TGCA | 4 cut(s) | 669, 762, 1134, 1149 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 191, 359, 744, 1316 |
| HpyF3I | CTNAG | 5 cut(s) | 215, 392, 515, 568, 861 |
| HpySE526I | ACGT | 1 cut(s) | 1100 |
| Hsp92II | CATG | 5 cut(s) | 142, 200, 368, 677, 1342 |
| HspAI | GCGC | 4 cut(s) | 120, 288, 968, 1403 |
| KroI | GCCGGC | 1 cut(s) | 637 |
| KroNI | GCCGGC | 1 cut(s) | 639 |
| LmnI | GCTCC | 7 cut(s) | 4, 66, 79, 165, 359, 723, 896 |
| Lsp1109I | GCAGC | 2 cut(s) | 455, 1118 |
| LweI | GCATC | 2 cut(s) | 164, 1136 |
| MaeII | ACGT | 1 cut(s) | 1100 |
| MaeIII | GTNAC | 2 cut(s) | 449, 768 |
| MboII | GAAGA | 4 cut(s) | 385, 512, 854, 1387 |
| MfeI | CAATTG | 1 cut(s) | 331 |
| MflI | RGATCY | 2 cut(s) | 1107, 1334 |
| MhlI | GDGCHC | 6 cut(s) | 9, 110, 278, 364, 944, 1097 |
| MluCI | AATT | 9 cut(s) | 46, 224, 331, 401, 618, 664, 866, 946, 1313 |
| MlyI | GAGTC | 2 cut(s) | 439, 704 |
| MnlI | CCTC | 9 cut(s) | 70, 401, 496, 538, 577, 913, 921, 1011, 1121 |
| MroNI | GCCGGC | 1 cut(s) | 637 |
| MseI | TTAA | 3 cut(s) | 405, 882, 1014 |
| MspA1I | CMGCKG | 1 cut(s) | 1276 |
| MspI | CCGG | 4 cut(s) | 178, 638, 1282, 1399 |
| MspR9I | CCNGG | 3 cut(s) | 994, 1283, 1400 |
| MunI | CAATTG | 1 cut(s) | 331 |
| MvaI | CCWGG | 1 cut(s) | 994 |
| MvnI | CGCG | 1 cut(s) | 205 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 191, 359, 744, 1316 |
| NaeI | GCCGGC | 1 cut(s) | 639 |
| NciI | CCSGG | 2 cut(s) | 1283, 1400 |
| NgoMIV | GCCGGC | 1 cut(s) | 637 |
| NlaIII | CATG | 5 cut(s) | 142, 200, 368, 677, 1342 |
| NlaIV | GGNNCC | 4 cut(s) | 746, 981, 1280, 1290 |
| NmeAIII | GCCGAG | 2 cut(s) | 332, 1033 |
| NmuCI | GTSAC | 1 cut(s) | 768 |
| NsbI | TGCGCA | 3 cut(s) | 121, 289, 969 |
| PagI | TCATGA | 2 cut(s) | 196, 364 |
| PaqCI | CACCTGC | 1 cut(s) | 1140 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 160 |
| PdiI | GCCGGC | 1 cut(s) | 639 |
| PfeI | GAWTC | 9 cut(s) | 53, 151, 200, 397, 647, 796, 932, 1270, 1392 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1103 |
| PkrI | GCNGC | 2 cut(s) | 445, 1133 |
| PleI | GAGTC | 2 cut(s) | 438, 704 |
| PpsI | GAGTC | 2 cut(s) | 438, 704 |
| Psp124BI | GAGCTC | 1 cut(s) | 364 |
| Psp6I | CCWGG | 1 cut(s) | 992 |
| PspGI | CCWGG | 1 cut(s) | 992 |
| PspN4I | GGNNCC | 4 cut(s) | 746, 981, 1280, 1290 |
| PspPI | GGNCC | 2 cut(s) | 914, 1279 |
| PsuI | RGATCY | 2 cut(s) | 1107, 1334 |
| RsaI | GTAC | 4 cut(s) | 134, 685, 753, 1262 |
| RsaNI | GTAC | 4 cut(s) | 133, 684, 752, 1261 |
| SacI | GAGCTC | 1 cut(s) | 364 |
| SaqAI | TTAA | 3 cut(s) | 405, 882, 1014 |
| SatI | GCNGC | 2 cut(s) | 444, 1132 |
| Sau96I | GGNCC | 2 cut(s) | 914, 1279 |
| SchI | GAGTC | 2 cut(s) | 439, 704 |
| ScrFI | CCNGG | 3 cut(s) | 994, 1283, 1400 |
| SduI | GDGCHC | 6 cut(s) | 9, 110, 278, 364, 944, 1097 |
| SfaNI | GCATC | 2 cut(s) | 164, 1136 |
| SinI | GGWCC | 1 cut(s) | 1279 |
| Sse9I | AATT | 9 cut(s) | 46, 224, 331, 401, 618, 664, 866, 946, 1313 |
| SsiI | CCGC | 6 cut(s) | 205, 304, 894, 1021, 1155, 1276 |
| SspI | AATATT | 1 cut(s) | 785 |
| SstI | GAGCTC | 1 cut(s) | 364 |
| StyD4I | CCNGG | 3 cut(s) | 992, 1281, 1398 |
| StyI | CCWWGG | 1 cut(s) | 983 |
| TaaI | ACNGT | 1 cut(s) | 273 |
| TaiI | ACGT | 1 cut(s) | 1103 |
| TaqI | TCGA | 6 cut(s) | 32, 459, 713, 794, 906, 1418 |
| TasI | AATT | 9 cut(s) | 46, 224, 331, 401, 618, 664, 866, 946, 1313 |
| TatI | WGTACW | 2 cut(s) | 683, 1260 |
| TfiI | GAWTC | 9 cut(s) | 53, 151, 200, 397, 647, 796, 932, 1270, 1392 |
| Tru1I | TTAA | 3 cut(s) | 405, 882, 1014 |
| Tru9I | TTAA | 3 cut(s) | 405, 882, 1014 |
| TscAI | CASTG | 4 cut(s) | 76, 278, 977, 1088 |
| TseFI | GTSAC | 1 cut(s) | 768 |
| TseI | GCWGC | 2 cut(s) | 443, 1131 |
| Tsp45I | GTSAC | 1 cut(s) | 768 |
| TspDTI | ATGAA | 6 cut(s) | 213, 381, 386, 445, 513, 1394 |
| TspRI | CASTG | 4 cut(s) | 76, 278, 977, 1088 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1103 |
| VpaK11BI | GGWCC | 1 cut(s) | 1279 |
| XapI | RAATTY | 4 cut(s) | 46, 618, 866, 1313 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 93 |