Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

8646717 .. 8647347

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG106300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTGCCCTCTGAAGTGGTTGAGAGGTGGGAAAGCGCTCTACGTGAGACTATGATTGTTGGGTCTCAGAGATTTTACTGTCCCTTCAAGGACTGCTCGATAATGTTGATTGAGGATGGGACACAGGTTGTAGCAGAGTCGGAGTGCCCTAATTGTAAGAGAATGTTTTGTGCGCAGTGTAAGGTTCCTTGGCACACCGAGATTGAATGCGAAGAGTTTCAGAAGCTGAATGAGAATGAGCCGGAGAAGGAGGATATCATGCTGAGGAACCTTGCTCGGAAGCGGCATTGGAGTAGGTGTCCAAAGTGTAGGTTCTATGTGGAAAGAACATATGGTGCTGGTGCGGAACTTGTTTCTTCTACGGTACCGAACAAATTTAAGGAAGCAATATCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

132

Amino Acids

15.43

Weight (kDa)

5.79

Isoelectric Point (pI)

68.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	11 - 70	5.9e-11	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	174
Acc65I	GGTACC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	364
AciI	CCGC	2 cut(s)	283, 344
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	366
AfeI	AGCGCT	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	88, 206
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	2 cut(s)	41, 69
AlwNI	CAGNNNCTG	1 cut(s)	226
Aor51HI	AGCGCT	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	216
Asp718I	GGTACC	1 cut(s)	364
AspLEI	GCGC	2 cut(s)	38, 175
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	364
BbvCI	CCTCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	41, 69
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	2 cut(s)	5, 284
BlsI	GCNGC	2 cut(s)	6, 285
BmiI	GGNNCC	3 cut(s)	186, 269, 366
Bpu10I	CCTNAGC	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	121
BseMII	CTCAG	2 cut(s)	80, 254
BseSI	GKGCMC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	66, 133
BsmAI	GTCTC	2 cut(s)	41, 69
BsmFI	GGGAC	2 cut(s)	66, 133
BsmI	GAATGC	1 cut(s)	212
Bso31I	GGTCTC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	149
BspACI	CCGC	2 cut(s)	283, 344
BspCNI	CTCAG	2 cut(s)	79, 255
BspLI	GGNNCC	3 cut(s)	186, 269, 366
BspT107I	GGYRCC	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	80, 364
Bst6I	CTCTTC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	66, 263
BstF5I	GGATG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	38, 175
BstMAI	GTCTC	2 cut(s)	41, 69
BstSLI	GKGCMC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	2 cut(s)	38, 175
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	2 cut(s)	226, 241
CviKI_1	RGCY	2 cut(s)	226, 241
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	2 cut(s)	66, 263
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	69
Eco32I	GATATC	1 cut(s)	256
Eco47III	AGCGCT	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	33
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	1 cut(s)	262
FaiI	YATR	6 cut(s)	53, 260, 318, 331, 333, 397
FaqI	GGGAC	2 cut(s)	66, 133
FatI	CATG	1 cut(s)	258
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	5, 284
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	5, 284
FspI	TGCGCA	1 cut(s)	174
GlaI	GCGC	2 cut(s)	37, 174
GluI	GCNGC	2 cut(s)	5, 284
HaeII	RGCGCY	1 cut(s)	39
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	2 cut(s)	38, 175
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	2 cut(s)	36, 173
HinP1I	GCGC	2 cut(s)	36, 173
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	242
Hpy188I	TCNGA	5 cut(s)	13, 69, 142, 222, 279
HpyAV	CCTTC	2 cut(s)	94, 241
HpyCH4III	ACNGT	2 cut(s)	80, 364
HpyCH4IV	ACGT	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	66, 263
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	2 cut(s)	36, 173
KpnI	GGTACC	1 cut(s)	368
LpnPI	CCDG	3 cut(s)	110, 255, 324
MaeII	ACGT	1 cut(s)	43
MboII	GAAGA	2 cut(s)	224, 348
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	2 cut(s)	151, 374
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	5 cut(s)	18, 19, 106, 244, 258
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	378
MspI	CCGG	1 cut(s)	242
Mva1269I	GAATGC	1 cut(s)	212
NdeI	CATATG	1 cut(s)	331
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	3 cut(s)	186, 269, 366
NsbI	TGCGCA	1 cut(s)	174
PctI	GAATGC	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	6, 285
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	44
PspN4I	GGNNCC	3 cut(s)	186, 269, 366
PstNI	CAGNNNCTG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	2 cut(s)	5, 284
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	8 cut(s)	29, 46, 129, 186, 228, 273, 299, 314
Sse9I	AATT	2 cut(s)	151, 374
SsiI	CCGC	2 cut(s)	283, 344
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	80, 364
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	98
TasI	AATT	2 cut(s)	151, 374
TauI	GCSGC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	1 cut(s)	182
TseI	GCWGC	1 cut(s)	4
TspRI	CASTG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.