Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

4384131 .. 4385993

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0056700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCCCCGATTGCCGTCGGCGATTCGCTTCCGGACGGTACTCTGTCCTACTTCGACGACCAAGATCAGATGCAAACGGTCAACGTTCACTCCCTCGCCGCCGGCAAGAAGATCATCCTCTTCGGCGTCCCCGGCGCCTTCACCCCCACTTGCAGTTTGAAGCATGTTCCTGGATATATTGAGAAAGCAGATGAGCTGAAATCCAAGGGTGTTGACAAGATTATCTGCCTCAGTGTGAATGACCCCTTTGTGATGAAGGCATGGGCCAAATCCTACCCTGAGAACAAGCATGTCCTTTTCGCTGCTGATGGATCAGCGAAATACACCCATGCCCTTGGTCTTGAGCTTGACCTCTCGGAGAAAGGACTTGGAACTCGTTCCAGGAGGTTTGCTCTCTTGGTCGATGACCTCAAGGTGAAGGCTGCAAATGTTGAAGCTGGAGGAGAGTTCACCGTCTCTAGTGCTGATGACATCCTCAAGGCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

162

Amino Acids

17.35

Weight (kDa)

5.77

Isoelectric Point (pI)

25.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	6 - 159	1.8e-36	Redoxin
AhpC-TSA	PF00578	6 - 121	2.7e-11	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	1 cut(s)	99
AclI	AACGTT	1 cut(s)	84
AclWI	GGATC	1 cut(s)	319
AcyI	GRCGYC	2 cut(s)	126, 135
AfaI	GTAC	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	160, 434
AjnI	CCWGG	2 cut(s)	169, 380
AluBI	AGCT	3 cut(s)	196, 346, 437
AluI	AGCT	3 cut(s)	196, 346, 437
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	319
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	2 cut(s)	3, 264
ApeKI	GCWGC	2 cut(s)	302, 422
Asp700I	GAANNNNTTC	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	4, 264
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	3 cut(s)	133, 427, 442
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	289, 409
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	2 cut(s)	171, 382
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	3 cut(s)	99, 303, 423
BlsI	GCNGC	3 cut(s)	100, 304, 424
Bme1390I	CCNGG	3 cut(s)	132, 171, 382
BmgT120I	GGNCC	2 cut(s)	4, 264
BmiI	GGNNCC	2 cut(s)	6, 136
BmrFI	CCNGG	3 cut(s)	132, 171, 382
BmsI	GCATC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
BpmI	CTGGAG	1 cut(s)	459
BpuEI	CTTGAG	3 cut(s)	362, 395, 461
BpuMI	CCSGG	1 cut(s)	132
BsaHI	GRCGYC	2 cut(s)	126, 135
BsaJI	CCNNGG	3 cut(s)	130, 204, 334
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse118I	RCCGGY	1 cut(s)	101
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	171, 382
BseDI	CCNNGG	3 cut(s)	130, 204, 334
BseGI	GGATG	2 cut(s)	114, 471
BseMII	CTCAG	2 cut(s)	244, 270
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	289, 409
BshFI	GGCC	2 cut(s)	5, 266
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	32, 102, 132
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	460
BsmBI	CGTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	5, 266
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	64, 111, 311
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	2 cut(s)	5, 266
BspCNI	CTCAG	2 cut(s)	243, 271
BspEI	TCCGGA	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	6, 136
BspPI	GGATC	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	3 cut(s)	130, 204, 334
BssMI	GATC	3 cut(s)	64, 111, 311
BssNI	GRCGYC	2 cut(s)	126, 135
BssT1I	CCWWGG	2 cut(s)	204, 334
Bst2UI	CCWGG	2 cut(s)	171, 382
Bst4CI	ACNGT	3 cut(s)	38, 79, 454
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	2 cut(s)	126, 135
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	230, 279
BstF5I	GGATG	2 cut(s)	114, 471
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	3 cut(s)	67, 114, 314
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	3 cut(s)	64, 111, 311
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 132
BstNI	CCWGG	2 cut(s)	171, 382
BstNSI	RCATGY	2 cut(s)	167, 293
BstSCI	CCNGG	3 cut(s)	130, 169, 380
BstV1I	GCAGC	2 cut(s)	289, 409
BstXI	CCANNNNNNTGG	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	5, 266
BtsCI	GGATG	2 cut(s)	114, 471
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	4, 264
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	4 cut(s)	164, 261, 290, 329
CviJI	RGCY	7 cut(s)	5, 196, 266, 346, 422, 437, 482
CviKI_1	RGCY	7 cut(s)	5, 196, 266, 346, 422, 437, 482
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	2 cut(s)	230, 279
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	3 cut(s)	66, 113, 313
DpnII	GATC	3 cut(s)	64, 111, 311
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	2 cut(s)	204, 334
EcoRII	CCWGG	2 cut(s)	169, 380
EcoT14I	CCWWGG	2 cut(s)	204, 334
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	2 cut(s)	204, 334
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	4 cut(s)	167, 264, 293, 332
FaiI	YATR	5 cut(s)	165, 177, 262, 291, 330
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	4 cut(s)	163, 260, 289, 328
Fnu4HI	GCNGC	3 cut(s)	99, 303, 423
FokI	GGATG	2 cut(s)	101, 458
Fsp4HI	GCNGC	3 cut(s)	99, 303, 423
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	3 cut(s)	99, 303, 423
GsuI	CTGGAG	1 cut(s)	459
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	5, 266
HapII	CCGG	3 cut(s)	32, 102, 132
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	2 cut(s)	126, 135
Hin1II	CATG	4 cut(s)	167, 264, 293, 332
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	2 cut(s)	82, 214
HindII	GTYRAC	2 cut(s)	82, 214
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	3 cut(s)	32, 102, 132
HphI	GGTGA	3 cut(s)	133, 427, 442
Hpy166II	GTNNAC	4 cut(s)	82, 88, 214, 450
Hpy188I	TCNGA	2 cut(s)	69, 358
Hpy188III	TCNNGA	2 cut(s)	32, 341
Hpy8I	GTNNAC	4 cut(s)	82, 88, 214, 450
Hpy99I	CGWCG	2 cut(s)	20, 59
HpyAV	CCTTC	3 cut(s)	148, 250, 412
HpyCH4III	ACNGT	3 cut(s)	38, 79, 454
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	73, 153, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 132
HpyF3I	CTNAG	2 cut(s)	230, 279
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	2 cut(s)	126, 135
Hsp92II	CATG	4 cut(s)	167, 264, 293, 332
HspAI	GCGC	1 cut(s)	135
KasI	GGCGCC	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	31
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	64, 111, 311
LpnPI	CCDG	9 cut(s)	45, 115, 145, 156, 183, 291, 367, 394, 423
Lsp1109I	GCAGC	2 cut(s)	289, 409
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	84
MalI	GATC	3 cut(s)	66, 113, 313
MboI	GATC	3 cut(s)	64, 111, 311
MboII	GAAGA	2 cut(s)	112, 121
Mly113I	GGCGCC	1 cut(s)	135
MnlI	CCTC	8 cut(s)	104, 128, 239, 362, 378, 419, 434, 485
MroI	TCCGGA	1 cut(s)	31
MroNI	GCCGGC	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	376
MspI	CCGG	3 cut(s)	32, 102, 132
MspR9I	CCNGG	3 cut(s)	132, 171, 382
MvaI	CCWGG	2 cut(s)	171, 382
MwoI	GCNNNNNNNGC	2 cut(s)	11, 132
NaeI	GCCGGC	1 cut(s)	103
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	64, 111, 311
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	4 cut(s)	167, 264, 293, 332
NlaIV	GGNNCC	2 cut(s)	6, 136
NspI	RCATGY	2 cut(s)	167, 293
PdiI	GCCGGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	23
PfoI	TCCNGGA	2 cut(s)	169, 380
PkrI	GCNGC	3 cut(s)	100, 304, 424
PluTI	GGCGCC	1 cut(s)	138
Psp1406I	AACGTT	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	169, 380
PspGI	CCWGG	2 cut(s)	169, 380
PspN4I	GGNNCC	2 cut(s)	6, 136
PspPI	GGNCC	2 cut(s)	4, 264
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SatI	GCNGC	3 cut(s)	99, 303, 423
Sau3AI	GATC	3 cut(s)	64, 111, 311
Sau96I	GGNCC	2 cut(s)	4, 264
ScrFI	CCNGG	3 cut(s)	132, 171, 382
SetI	ASST	8 cut(s)	87, 198, 348, 354, 389, 411, 417, 439
SfaNI	GCATC	1 cut(s)	60
SfoI	GGCGCC	1 cut(s)	136
SmlI	CTYRAG	3 cut(s)	341, 410, 476
SmoI	CTYRAG	3 cut(s)	341, 410, 476
SsiI	CCGC	1 cut(s)	99
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	130, 169, 380
StyI	CCWWGG	2 cut(s)	204, 334
TaaI	ACNGT	3 cut(s)	38, 79, 454
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	54, 402
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	23
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	2 cut(s)	302, 422
TspDTI	ATGAA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	238
XceI	RCATGY	2 cut(s)	167, 293
XmnI	GAANNNNTTC	1 cut(s)	376
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.