Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

8886342 .. 8887232

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG105900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTGATTGACGATGGGACAGAGATTGTGAAGGATTCGGAGTGCCCTAATTGCAATAGAATGTTCTGTGCTCAGTGTAAGGTTCCTTGGCACGCCGGGATTGAGTGTGCGGAGTTTAAGAAGCTGAAGAATGATGAGAAGGGAAATGAGGACATCATGCTAAGGAACCTTGCGCAGAAGAACCAATGGAGGAGGTGTCCAAAGTGTAGGTTCTATGTGGAAAAATTGATAGGTTGCGATACCATGCGGTGCAGGTGCAGTACTTATTTCTGCTACATTTGTGGAAAACTTAATGTCACCTGCAGTTGTCATCGCAGAAATTTAGCTCGTGGAATGTTCTCTGGTGGATTTTACGGAAGGGGAAGAGTCGGGGTCGGATATTACAGGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

130

Amino Acids

15.14

Weight (kDa)

9.13

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	10 - 36	4.2e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	243, 308
Acc16I	TGCGCA	1 cut(s)	174
Acc36I	ACCTGC	2 cut(s)	243, 308
AciI	CCGC	2 cut(s)	110, 247
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	1 cut(s)	262
AluBI	AGCT	2 cut(s)	124, 326
AluI	AGCT	2 cut(s)	124, 326
Alw21I	GWGCWC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	175
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	289
BaeGI	GKGCMC	1 cut(s)	47
BauI	CACGAG	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	73
BccI	CCATC	1 cut(s)	8
BcnI	CCSGG	1 cut(s)	97
BfmI	CTRYAG	1 cut(s)	301
BfuAI	ACCTGC	2 cut(s)	243, 308
BmcAI	AGTACT	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	84, 167
BmrFI	CCNGG	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
BseDI	CCNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	47
BsgI	GTGCAG	2 cut(s)	271, 277
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	47, 73
BspACI	CCGC	2 cut(s)	110, 247
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	84, 167
BspMAI	CTGCAG	1 cut(s)	305
BspMI	ACCTGC	2 cut(s)	243, 308
BssECI	CCNNGG	1 cut(s)	86
BssSI	CACGAG	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	72, 161
BstHHI	GCGC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	80
BveI	ACCTGC	2 cut(s)	243, 308
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	2 cut(s)	157, 244
CviJI	RGCY	2 cut(s)	124, 326
CviKI_1	RGCY	2 cut(s)	124, 326
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	2 cut(s)	72, 161
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	2 cut(s)	160, 247
FaiI	YATR	3 cut(s)	158, 216, 245
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	156, 243
FspI	TGCGCA	1 cut(s)	174
GlaI	GCGC	1 cut(s)	174
HapII	CCGG	1 cut(s)	96
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	2 cut(s)	160, 247
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	2 cut(s)	35, 366
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	40, 377
HpyAV	CCTTC	3 cut(s)	25, 133, 351
HpyCH4V	TGCA	4 cut(s)	54, 252, 258, 303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	2 cut(s)	72, 161
Hsp92II	CATG	2 cut(s)	160, 247
HspAI	GCGC	1 cut(s)	173
LpnPI	CCDG	5 cut(s)	109, 238, 313, 327, 370
MaeIII	GTNAC	1 cut(s)	295
MboII	GAAGA	3 cut(s)	139, 190, 375
MhlI	GDGCHC	2 cut(s)	47, 73
MluCI	AATT	3 cut(s)	49, 224, 319
MlyI	GAGTC	1 cut(s)	375
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	3 cut(s)	142, 183, 186
MseI	TTAA	2 cut(s)	117, 291
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	97
NlaIII	CATG	2 cut(s)	160, 247
NlaIV	GGNNCC	2 cut(s)	84, 167
NmuCI	GTSAC	1 cut(s)	295
NsbI	TGCGCA	1 cut(s)	174
PaqCI	CACCTGC	2 cut(s)	243, 308
PfeI	GAWTC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PspN4I	GGNNCC	2 cut(s)	84, 167
PstI	CTGCAG	1 cut(s)	305
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	117, 291
ScaI	AGTACT	1 cut(s)	262
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	2 cut(s)	47, 73
SetI	ASST	9 cut(s)	84, 126, 171, 197, 212, 235, 257, 302, 328
SfcI	CTRYAG	1 cut(s)	301
Sse9I	AATT	3 cut(s)	49, 224, 319
SsiI	CCGC	2 cut(s)	110, 247
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	86
TasI	AATT	3 cut(s)	49, 224, 319
TatI	WGTACW	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	117, 291
Tru9I	TTAA	2 cut(s)	117, 291
TscAI	CASTG	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	1 cut(s)	80
XapI	RAATTY	1 cut(s)	319
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.