Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

4369890 .. 4371029

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0056300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCATAAGTTGGTTTCACACGATCATGGTGTTGACAAGTTGATGCATAAGCAGGTTTTGAAATTGGTGAAACAAGTCGCATTTTGGGTCTCAAGTCTCAATTTGTCCGCAAGAATTGATAGAATTGATGTGAAGAACACTGATGTTGTCAGAAAACTAGCTTCACAGCCATACGACTCGCGACGCGTCTCGAAATCAAGACTAGGCTGCTGTTCACCACAGGATAGTGAACTTGCAAACTATAACGAAGTACAGGGCTTTGAAGCGCTTGCACAAAAACTCTTCGAAAATTTGATAGATGAAGAGCCACAGCTTTCAACAATTTGTGTTGTCGGTCCTGGTGGATCTGGAAAATCCACCCTGGTAAATTTTGTTTTCAAGTGGAAGGTTGTAGAGTTGTTTGAGTGCAAGACTTGGGTTCGTGTGACGCGTCGGCCACTTCCACCCAAGGAACTCCTGCAACACATGCTGACTGATTTTGGGTATAAAAATTTAGAAGAAATCAATGATCCAGGAGCAAAATTGAGACTTTTTCTGCAGCAAAGGAGGTATCTGGTTGTCTTAGACGATGTTTGGAGTAAACAAGATTTCGATTGCATTGTAAAAGCGTTACCAAATGGTGCTCCCGGAAGTAAGATGATATTAACTAGTCGTAATTCTAGTGTCGTCTCTTTTCTCTCCCCCAAGTATATCCATGATTTGAGTAGTGGGTTGTCACCTGAAGCGGCCAAGAATCTAATCACCAGGAAGGTTCTCCATAATCATCTAGGAAATTTGCAACCCGAGGTGGAGGAGTGCACTGATAAAATTCTTCGATGGTGCGGGAACCAGCCCTTTGCAATTTCAGCGGTCGGTAGTTTGCTAGCAGAGAAGCCACAAACTCGAGCAGAGTGGGAGGATATTTATAACAATCTTGGATCTAAAACTGGACCGGGCTCTATTCTTGAAATTGTTAGCAATATTTTGCAGCCGAGTTTTATGGATCTTCCGAACCATCTTAAATCCAGTTTTCTGTACTTGAGCATTTTTCCTCCCAACTATGCCATCCAGCATGAGAGGCTAATTCACTTATGGGTTGCGGAAGGACTTGCGGAACATTATGCCCCTTCTTGGACGAGGGACAATGTTTTAAAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

379

Amino Acids

42.95

Weight (kDa)

8.7

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	89 - 256	2.5e-27	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	906
Acc36I	ACCTGC	1 cut(s)	43
AccII	CGCG	3 cut(s)	181, 186, 430
AciI	CCGC	6 cut(s)	108, 725, 822, 848, 1079, 1091
AclWI	GGATC	4 cut(s)	352, 503, 925, 990
AcoI	YGGCCR	2 cut(s)	434, 726
AcsI	RAATTY	5 cut(s)	289, 367, 490, 772, 807
AcuI	CTGAAG	1 cut(s)	741
AfaI	GTAC	2 cut(s)	252, 1016
AfeI	AGCGCT	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	1110
AflIII	ACRYGT	2 cut(s)	184, 428
AgsI	TTSAA	5 cut(s)	61, 263, 318, 379, 947
AhlI	ACTAGT	1 cut(s)	647
AjnI	CCWGG	4 cut(s)	337, 360, 511, 743
AluBI	AGCT	2 cut(s)	161, 313
AluI	AGCT	2 cut(s)	161, 313
Alw21I	GWGCWC	2 cut(s)	625, 800
Alw26I	GTCTC	5 cut(s)	94, 101, 193, 520, 673
Alw44I	GTGCAC	1 cut(s)	796
AlwI	GGATC	4 cut(s)	352, 503, 925, 990
Ama87I	CYCGRG	2 cut(s)	782, 882
Aor51HI	AGCGCT	1 cut(s)	267
AoxI	GGCC	2 cut(s)	434, 726
ApaLI	GTGCAC	1 cut(s)	796
ApeKI	GCWGC	3 cut(s)	207, 538, 967
ApoI	RAATTY	5 cut(s)	289, 367, 490, 772, 807
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	335, 929
AsuC2I	CCSGG	2 cut(s)	627, 933
AsuHPI	GGTGA	4 cut(s)	79, 207, 708, 733
AsuII	TTCGAA	1 cut(s)	285
AsuNHI	GCTAGC	1 cut(s)	862
AvaI	CYCGRG	2 cut(s)	782, 882
AvaII	GGWCC	2 cut(s)	335, 929
BaeGI	GKGCMC	1 cut(s)	800
BanII	GRGCYC	1 cut(s)	938
Bbv12I	GWGCWC	2 cut(s)	625, 800
BbvI	GCAGC	3 cut(s)	194, 550, 979
BccI	CCATC	3 cut(s)	810, 1002, 1052
BciT130I	CCWGG	4 cut(s)	339, 362, 513, 745
BcnI	CCSGG	2 cut(s)	627, 933
BcoDI	GTCTC	5 cut(s)	94, 101, 193, 520, 673
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	6 cut(s)	158, 203, 648, 660, 767, 863
BfmI	CTRYAG	1 cut(s)	536
BfoI	RGCGCY	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	4 cut(s)	208, 539, 726, 968
BlsI	GCNGC	4 cut(s)	209, 540, 727, 969
Bme1390I	CCNGG	6 cut(s)	339, 362, 513, 627, 745, 933
Bme18I	GGWCC	2 cut(s)	335, 929
BmeT110I	CYCGRG	2 cut(s)	782, 882
BmgT120I	GGNCC	2 cut(s)	335, 929
BmiI	GGNNCC	1 cut(s)	827
BmrFI	CCNGG	6 cut(s)	339, 362, 513, 627, 745, 933
BmsI	GCATC	1 cut(s)	33
BmtI	GCTAGC	1 cut(s)	866
Bpu14I	TTCGAA	1 cut(s)	285
BpuEI	CTTGAG	2 cut(s)	76, 1039
BpuMI	CCSGG	2 cut(s)	627, 933
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	3 cut(s)	360, 447, 783
Bsc4I	CCNNNNNNNGG	1 cut(s)	1110
Bse1I	ACTGG	2 cut(s)	931, 1005
BseBI	CCWGG	4 cut(s)	339, 362, 513, 745
BseDI	CCNNGG	3 cut(s)	360, 447, 783
BseGI	GGATG	1 cut(s)	1044
BseLI	CCNNNNNNNGG	1 cut(s)	1110
BseNI	ACTGG	2 cut(s)	931, 1005
BseRI	GAGGAG	1 cut(s)	806
BseSI	GKGCMC	1 cut(s)	800
BseXI	GCAGC	3 cut(s)	194, 550, 979
Bsh1236I	CGCG	3 cut(s)	181, 186, 430
Bsh1285I	CGRYCG	1 cut(s)	852
BshFI	GGCC	2 cut(s)	436, 728
BsiEI	CGRYCG	1 cut(s)	852
BsiHKAI	GWGCWC	2 cut(s)	625, 800
BsiHKCI	CYCGRG	2 cut(s)	782, 882
BsiSI	CCGG	2 cut(s)	627, 932
BslFI	GGGAC	1 cut(s)	1133
BslI	CCNNNNNNNGG	1 cut(s)	1110
BsmAI	GTCTC	5 cut(s)	94, 101, 193, 520, 673
BsmBI	CGTCTC	2 cut(s)	193, 673
BsmFI	GGGAC	1 cut(s)	1133
BsnI	GGCC	2 cut(s)	436, 728
Bso31I	GGTCTC	1 cut(s)	94
BsoBI	CYCGRG	2 cut(s)	782, 882
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	625, 800, 938
Bsp143I	GATC	5 cut(s)	22, 344, 508, 917, 982
Bsp68I	TCGCGA	1 cut(s)	181
BspACI	CCGC	6 cut(s)	108, 725, 822, 848, 1079, 1091
BspANI	GGCC	2 cut(s)	436, 728
BspFNI	CGCG	3 cut(s)	181, 186, 430
BspLI	GGNNCC	1 cut(s)	827
BspMAI	CTGCAG	1 cut(s)	540
BspMI	ACCTGC	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	866
BspPI	GGATC	4 cut(s)	352, 503, 925, 990
BspQI	GCTCTTC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	285
BspTNI	GGTCTC	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	931, 1005
BssECI	CCNNGG	3 cut(s)	360, 447, 783
BssMI	GATC	5 cut(s)	22, 344, 508, 917, 982
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	4 cut(s)	339, 362, 513, 745
Bst6I	CTCTTC	2 cut(s)	287, 297
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	270, 864
BstDEI	CTNAG	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	1044
BstFNI	CGCG	3 cut(s)	181, 186, 430
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	5 cut(s)	25, 347, 511, 920, 985
BstMAI	GTCTC	5 cut(s)	94, 101, 193, 520, 673
BstMBI	GATC	5 cut(s)	22, 344, 508, 917, 982
BstMCI	CGRYCG	1 cut(s)	852
BstMWI	GCNNNNNNNGC	3 cut(s)	466, 845, 1057
BstNI	CCWGG	4 cut(s)	339, 362, 513, 745
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	6 cut(s)	337, 360, 511, 625, 743, 931
BstSFI	CTRYAG	1 cut(s)	536
BstSLI	GKGCMC	1 cut(s)	800
BstUI	CGCG	3 cut(s)	181, 186, 430
BstV1I	GCAGC	3 cut(s)	194, 550, 979
BstX2I	RGATCY	3 cut(s)	344, 917, 982
BstYI	RGATCY	3 cut(s)	344, 917, 982
BsuRI	GGCC	2 cut(s)	436, 728
BtsCI	GGATG	1 cut(s)	1044
BtsIMutI	CAGTG	2 cut(s)	138, 798
BtuMI	TCGCGA	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	270, 864
CfoI	GCGC	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	335, 929
CseI	GACGC	4 cut(s)	175, 192, 419, 436
Csp6I	GTAC	2 cut(s)	251, 1015
CviAII	CATG	4 cut(s)	26, 466, 695, 1052
CviQI	GTAC	2 cut(s)	251, 1015
DdeI	CTNAG	1 cut(s)	562
DpnI	GATC	5 cut(s)	24, 346, 510, 919, 984
DpnII	GATC	5 cut(s)	22, 344, 508, 917, 982
DraI	TTTAAA	1 cut(s)	1131
EaeI	YGGCCR	2 cut(s)	434, 726
Eam1104I	CTCTTC	2 cut(s)	287, 297
EarI	CTCTTC	2 cut(s)	287, 297
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	938
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	335, 929
Eco47III	AGCGCT	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	741
Eco88I	CYCGRG	2 cut(s)	782, 882
EcoRII	CCWGG	4 cut(s)	337, 360, 511, 743
EcoT14I	CCWWGG	1 cut(s)	447
EcoT22I	ATGCAT	2 cut(s)	6, 48
EcoT38I	GRGCYC	1 cut(s)	938
ErhI	CCWWGG	1 cut(s)	447
Esp3I	CGTCTC	2 cut(s)	193, 673
FaeI	CATG	4 cut(s)	29, 469, 698, 1055
FaqI	GGGAC	1 cut(s)	1133
FatI	CATG	4 cut(s)	25, 465, 694, 1051
FauI	CCCGC	1 cut(s)	815
Fnu4HI	GCNGC	4 cut(s)	208, 539, 726, 968
FokI	GGATG	1 cut(s)	1031
FriOI	GRGCYC	1 cut(s)	938
Fsp4HI	GCNGC	4 cut(s)	208, 539, 726, 968
FspBI	CTAG	6 cut(s)	158, 203, 648, 660, 767, 863
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	4 cut(s)	208, 539, 726, 968
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	436, 728
HapII	CCGG	2 cut(s)	627, 932
HgaI	GACGC	4 cut(s)	175, 192, 419, 436
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	4 cut(s)	29, 469, 698, 1055
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	176, 733
HpaII	CCGG	2 cut(s)	627, 932
HphI	GGTGA	4 cut(s)	79, 207, 708, 733
Hpy166II	GTNNAC	5 cut(s)	34, 215, 230, 581, 798
Hpy188I	TCNGA	2 cut(s)	152, 990
Hpy188III	TCNNGA	5 cut(s)	180, 190, 198, 348, 944
Hpy8I	GTNNAC	5 cut(s)	34, 215, 230, 581, 798
Hpy99I	CGWCG	2 cut(s)	186, 435
HpyAV	CCTTC	4 cut(s)	379, 742, 1076, 1116
HpyF10VI	GCNNNNNNNGC	3 cut(s)	466, 845, 1057
HpyF3I	CTNAG	1 cut(s)	562
Hsp92II	CATG	4 cut(s)	29, 469, 698, 1055
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	5 cut(s)	22, 344, 508, 917, 982
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	515, 628
Lsp1109I	GCAGC	3 cut(s)	194, 550, 979
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	6 cut(s)	158, 203, 648, 660, 767, 863
MaeIII	GTNAC	3 cut(s)	424, 609, 714
MalI	GATC	5 cut(s)	24, 346, 510, 919, 984
MboI	GATC	5 cut(s)	22, 344, 508, 917, 982
MboII	GAAGA	6 cut(s)	145, 274, 314, 509, 803, 977
MflI	RGATCY	3 cut(s)	344, 917, 982
MhlI	GDGCHC	3 cut(s)	625, 800, 938
MluI	ACGCGT	2 cut(s)	184, 428
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	7 cut(s)	540, 778, 784, 889, 1041, 1050, 1110
Mph1103I	ATGCAT	2 cut(s)	6, 48
MseI	TTAA	3 cut(s)	644, 999, 1130
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	848
MspI	CCGG	2 cut(s)	627, 932
MspR9I	CCNGG	6 cut(s)	339, 362, 513, 627, 745, 933
MvaI	CCWGG	4 cut(s)	339, 362, 513, 745
MvnI	CGCG	3 cut(s)	181, 186, 430
MwoI	GCNNNNNNNGC	3 cut(s)	466, 845, 1057
NciI	CCSGG	2 cut(s)	627, 933
NdeII	GATC	5 cut(s)	22, 344, 508, 917, 982
NheI	GCTAGC	1 cut(s)	862
NlaIII	CATG	4 cut(s)	29, 469, 698, 1055
NlaIV	GGNNCC	1 cut(s)	827
NmeAIII	GCCGAG	1 cut(s)	996
NmuCI	GTSAC	2 cut(s)	424, 714
NruI	TCGCGA	1 cut(s)	181
NsiI	ATGCAT	2 cut(s)	6, 48
NspI	RCATGY	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	285
PaeR7I	CTCGAG	1 cut(s)	882
PciSI	GCTCTTC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	733
PfoI	TCCNGGA	2 cut(s)	511, 625
PkrI	GCNGC	4 cut(s)	209, 540, 727, 969
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PsiI	TTATAA	1 cut(s)	906
Psp6I	CCWGG	4 cut(s)	337, 360, 511, 743
PspGI	CCWGG	4 cut(s)	337, 360, 511, 743
PspN4I	GGNNCC	1 cut(s)	827
PspPI	GGNCC	2 cut(s)	335, 929
PspXI	VCTCGAGB	1 cut(s)	882
PstI	CTGCAG	1 cut(s)	540
PsuI	RGATCY	3 cut(s)	344, 917, 982
RruI	TCGCGA	1 cut(s)	181
RsaI	GTAC	2 cut(s)	252, 1016
RsaNI	GTAC	2 cut(s)	251, 1015
RseI	CAYNNNNRTG	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	644, 999, 1130
SatI	GCNGC	4 cut(s)	208, 539, 726, 968
Sau3AI	GATC	5 cut(s)	22, 344, 508, 917, 982
Sau96I	GGNCC	2 cut(s)	335, 929
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	6 cut(s)	339, 362, 513, 627, 745, 933
SduI	GDGCHC	3 cut(s)	625, 800, 938
SetI	ASST	8 cut(s)	57, 163, 315, 390, 551, 721, 753, 789
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	536
Sfr274I	CTCGAG	1 cut(s)	882
SfuI	TTCGAA	1 cut(s)	285
SinI	GGWCC	2 cut(s)	335, 929
SlaI	CTCGAG	1 cut(s)	882
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	3 cut(s)	91, 882, 1018
SmoI	CTYRAG	3 cut(s)	91, 882, 1018
SpeI	ACTAGT	1 cut(s)	647
SsiI	CCGC	6 cut(s)	108, 725, 822, 848, 1079, 1091
SspI	AATATT	1 cut(s)	961
SspMI	CTAG	6 cut(s)	158, 203, 648, 660, 767, 863
StyD4I	CCNGG	6 cut(s)	337, 360, 511, 625, 743, 931
StyI	CCWWGG	1 cut(s)	447
TaqI	TCGA	5 cut(s)	191, 285, 591, 814, 883
TaqII	GACCGA	1 cut(s)	323
TatI	WGTACW	2 cut(s)	250, 1014
TauI	GCSGC	1 cut(s)	728
TfiI	GAWTC	1 cut(s)	733
Tru1I	TTAA	3 cut(s)	644, 999, 1130
Tru9I	TTAA	3 cut(s)	644, 999, 1130
TscAI	CASTG	2 cut(s)	145, 805
TseFI	GTSAC	2 cut(s)	424, 714
TseI	GCWGC	3 cut(s)	207, 538, 967
Tsp45I	GTSAC	2 cut(s)	424, 714
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	2 cut(s)	145, 805
VneI	GTGCAC	1 cut(s)	796
VpaK11BI	GGWCC	2 cut(s)	335, 929
XapI	RAATTY	5 cut(s)	289, 367, 490, 772, 807
XceI	RCATGY	1 cut(s)	469
XhoI	CTCGAG	1 cut(s)	882
XspI	CTAG	6 cut(s)	158, 203, 648, 660, 767, 863
Zsp2I	ATGCAT	2 cut(s)	6, 48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.