Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

7792150 .. 7792938

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGAAGCAAGAAAGCGAAGAAACCCAAACTGGAGGAGAAAGTGTCTCAATCGCACATTGAGATTGTGAACATTGAAGACGATGAGCTTTGCTTCACACCAAAACGCTCTAGCAAGTTCAATTCTATCTCAGTCGATGAGAACAGTAACCTTCAATCAATCAAGGAATCTATTAAGGCCTCTCTTCTTAAGTCCACAGGTAATTTCATCGACCTTTCTGATGAAACTCATTCGGAAGATGAAGAAGAGCTTAGAGTTCTTAGGTTTCAACCCCCAAACACTACATTCGGAAAGCGAAAGGAACCCTTTAGTAGTCCTTCTGTAACCGAAGTTGGGGAATCTTCTAATTCCAATTCCAAAAAAGACCCATCATTTTTATGTGAAATTTGCGCCGAGCCCAAGTCTAGGAGTGAGTCATTTGGCATAAAAGACTGTAGTCATTCATATTGTACTGAGTGCATGATCAAATACGTGGCATCCAAGCTTCAAGAAAATGTTACATTCATTAAGTGCCCTGTTCCTGATTGCAAAGGGTTACTGGAGCCGGAGTATTGCCGTCCGATTCTGCCCCCTGAGGTGTTTGAGAGGTGGGGAAGTGCATTGTGTGAGGCGGTGATTCTCGGGTCTGAGAAGTTTTACTGCCCCTTTAAGGATTGCTCCGGAATGTTGATTGATGATGGAAAGAGGTTGTACGGGAATCGGAGTGCCCTAATTGTTGGAGAATGTTCTGTGCGCAATGTAAGGTTCCTTGGCATGCTGGGATTGACTGCGCAGAGTTTCAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

262

Amino Acids

29.41

Weight (kDa)

6.06

Isoelectric Point (pI)

70.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	734, 771
AccIII	TCCGGA	1 cut(s)	659
AciI	CCGC	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	384
AfaI	GTAC	2 cut(s)	451, 692
AfiI	CCNNNNNNNGG	3 cut(s)	333, 405, 649
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	5 cut(s)	77, 121, 155, 269, 488
AluBI	AGCT	3 cut(s)	88, 250, 484
AluI	AGCT	3 cut(s)	88, 250, 484
Alw26I	GTCTC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	620
Aor13HI	TCCGGA	1 cut(s)	659
AoxI	GGCC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	384
AspLEI	GCGC	3 cut(s)	392, 735, 772
AsuHPI	GGTGA	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	620
AxyI	CCTNAGG	1 cut(s)	573
BaeGI	GKGCMC	2 cut(s)	515, 709
BanII	GRGCYC	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	84
BccI	CCATC	2 cut(s)	376, 671
BceAI	ACGGC	1 cut(s)	540
BclI	TGATCA	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	111, 405
BfmI	CTRYAG	1 cut(s)	433
BfrI	CTTAAG	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	620
BmiI	GGNNCC	3 cut(s)	303, 543, 746
BmsI	GCATC	1 cut(s)	485
BoxI	GACNNNNGTC	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	2 cut(s)	53, 560
BsaAI	YACGTR	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	748
BsaWI	WCCGGW	1 cut(s)	659
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 533, 563
Bsc4I	CCNNNNNNNGG	3 cut(s)	333, 405, 649
Bse1I	ACTGG	2 cut(s)	36, 543
Bse21I	CCTNAGG	1 cut(s)	573
Bse3DI	GCAATG	1 cut(s)	742
BseAI	TCCGGA	1 cut(s)	659
BseDI	CCNNGG	1 cut(s)	748
BseGI	GGATG	1 cut(s)	476
BseLI	CCNNNNNNNGG	3 cut(s)	333, 405, 649
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	4 cut(s)	144, 444, 564, 618
BseNI	ACTGG	2 cut(s)	36, 543
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	2 cut(s)	515, 709
BseYI	CCCAGC	1 cut(s)	757
BshFI	GGCC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	2 cut(s)	545, 660
BslI	CCNNNNNNNGG	3 cut(s)	333, 405, 649
BsmAI	GTCTC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	3 cut(s)	399, 515, 709
Bsp13I	TCCGGA	1 cut(s)	659
Bsp143I	GATC	1 cut(s)	462
BspACI	CCGC	1 cut(s)	611
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	4 cut(s)	143, 445, 565, 619
BspEI	TCCGGA	1 cut(s)	659
BspLI	GGNNCC	3 cut(s)	303, 543, 746
BspQI	GCTCTTC	1 cut(s)	240
BspTI	CTTAAG	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	742
BsrI	ACTGG	2 cut(s)	36, 543
BssECI	CCNNGG	1 cut(s)	748
BssMI	GATC	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	748
Bst4CI	ACNGT	2 cut(s)	146, 434
Bst6I	CTCTTC	2 cut(s)	189, 240
BstAFI	CTTAAG	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	755
BstDEI	CTNAG	6 cut(s)	130, 251, 260, 453, 573, 627
BstF5I	GGATG	1 cut(s)	476
BstHHI	GCGC	3 cut(s)	392, 735, 772
BstKTI	GATC	1 cut(s)	465
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	757
BstPAI	GACNNNNGTC	1 cut(s)	435
BstSFI	CTRYAG	1 cut(s)	433
BstSLI	GKGCMC	2 cut(s)	515, 709
BstV2I	GAAGAC	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	573
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	476
Cac8I	GCNNGC	1 cut(s)	755
CfoI	GCGC	3 cut(s)	392, 735, 772
Csp6I	GTAC	2 cut(s)	450, 691
CviAII	CATG	2 cut(s)	460, 754
CviJI	RGCY	6 cut(s)	88, 179, 250, 397, 484, 544
CviKI_1	RGCY	6 cut(s)	88, 179, 250, 397, 484, 544
CviQI	GTAC	2 cut(s)	450, 691
DdeI	CTNAG	6 cut(s)	130, 251, 260, 453, 573, 627
DpnI	GATC	1 cut(s)	464
DpnII	GATC	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	189, 240
EarI	CTCTTC	2 cut(s)	189, 240
Eco130I	CCWWGG	1 cut(s)	748
Eco147I	AGGCCT	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	399
Eco81I	CCTNAGG	1 cut(s)	573
Eco88I	CYCGRG	1 cut(s)	620
EcoT14I	CCWWGG	1 cut(s)	748
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	2 cut(s)	463, 757
FaiI	YATR	5 cut(s)	379, 425, 445, 461, 755
FalI	AAGNNNNNCTT	4 cut(s)	234, 266, 290, 322
FatI	CATG	2 cut(s)	459, 753
FbaI	TGATCA	1 cut(s)	462
FokI	GGATG	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	399
FspBI	CTAG	2 cut(s)	111, 405
FspI	TGCGCA	2 cut(s)	734, 771
GlaI	GCGC	3 cut(s)	391, 734, 771
GsaI	CCCAGC	1 cut(s)	761
GsuI	CTGGAG	2 cut(s)	53, 560
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	2 cut(s)	545, 660
HhaI	GCGC	3 cut(s)	392, 735, 772
Hin1II	CATG	2 cut(s)	463, 757
Hin6I	GCGC	3 cut(s)	390, 733, 770
HinP1I	GCGC	3 cut(s)	390, 733, 770
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	6 cut(s)	167, 338, 413, 562, 616, 697
HpaII	CCGG	2 cut(s)	545, 660
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	2 cut(s)	70, 195
Hpy188I	TCNGA	7 cut(s)	220, 235, 290, 561, 628, 702, 782
Hpy188III	TCNNGA	3 cut(s)	488, 521, 660
Hpy8I	GTNNAC	2 cut(s)	70, 195
HpyAV	CCTTC	2 cut(s)	161, 327
HpyCH4III	ACNGT	2 cut(s)	146, 434
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	3 cut(s)	459, 528, 599
HpyF3I	CTNAG	6 cut(s)	130, 251, 260, 453, 573, 627
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	2 cut(s)	463, 757
HspAI	GCGC	3 cut(s)	390, 733, 770
Kpn2I	TCCGGA	1 cut(s)	659
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	1 cut(s)	462
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	2 cut(s)	541, 662
LpnPI	CCDG	9 cut(s)	17, 183, 524, 528, 534, 558, 585, 673, 743
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	2 cut(s)	111, 405
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	4 cut(s)	146, 322, 496, 534
MalI	GATC	1 cut(s)	464
MboI	GATC	1 cut(s)	462
MboII	GAAGA	7 cut(s)	31, 89, 176, 248, 254, 257, 333
MhlI	GDGCHC	3 cut(s)	399, 515, 709
MluCI	AATT	6 cut(s)	121, 202, 346, 352, 384, 711
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	697
MnlI	CCTC	6 cut(s)	28, 190, 568, 579, 601, 678
MroI	TCCGGA	1 cut(s)	659
MseI	TTAA	4 cut(s)	174, 189, 507, 648
MslI	CAYNNNNRTG	1 cut(s)	376
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	2 cut(s)	545, 660
NdeII	GATC	1 cut(s)	462
NlaIII	CATG	2 cut(s)	463, 757
NlaIV	GGNNCC	3 cut(s)	303, 543, 746
NmeAIII	GCCGAG	1 cut(s)	418
NsbI	TGCGCA	2 cut(s)	734, 771
NspI	RCATGY	1 cut(s)	757
PaeI	GCATGC	1 cut(s)	757
PceI	AGGCCT	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	240
PfeI	GAWTC	5 cut(s)	167, 338, 562, 616, 697
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	472
PshAI	GACNNNNGTC	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	757
PspN4I	GGNNCC	3 cut(s)	303, 543, 746
RsaI	GTAC	2 cut(s)	451, 692
RsaNI	GTAC	2 cut(s)	450, 691
RseI	CAYNNNNRTG	1 cut(s)	376
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	174, 189, 507, 648
Sau3AI	GATC	1 cut(s)	462
SchI	GAGTC	1 cut(s)	422
SduI	GDGCHC	3 cut(s)	399, 515, 709
SfaNI	GCATC	1 cut(s)	485
SfcI	CTRYAG	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	757
Sse9I	AATT	6 cut(s)	121, 202, 346, 352, 384, 711
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	1 cut(s)	611
SspMI	CTAG	2 cut(s)	111, 405
StuI	AGGCCT	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	2 cut(s)	146, 434
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	2 cut(s)	135, 210
TasI	AATT	6 cut(s)	121, 202, 346, 352, 384, 711
TatI	WGTACW	1 cut(s)	449
TfiI	GAWTC	5 cut(s)	167, 338, 562, 616, 697
Tru1I	TTAA	4 cut(s)	174, 189, 507, 648
Tru9I	TTAA	4 cut(s)	174, 189, 507, 648
TspDTI	ATGAA	5 cut(s)	196, 237, 255, 432, 493
Vha464I	CTTAAG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	384
XceI	RCATGY	1 cut(s)	757
XspI	CTAG	2 cut(s)	111, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.