RLG00000031119

Domain of unknown function (DUF3444)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000271
Physical Location & Seq
Forward (+)
2325321 .. 2326319
999 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031119

Sequence Viewer

Length: 693 bp
ATGGAGAGCAACAGGAGTGGTGTTCATCCAGAAATTCAGGAGCAACCAAACACACTCTGGATACGGTGCCCTTTTTGTTGTGCAAAGTTTCAATACCACATAGAATTTATGAATCGGTTGCTCCGGTGTCAGAGATGCCGAAACGCATTTGAAGCTCATGAATTGCGGGATGGTGTTGAGCCAGAATCTCTCAAGAATCAATTTCCAAATCATAAAAAGCCTCCGCAACCAAACACATTTTGGACACAGTGCCCCTTTTGTTGCGCAATGTCTCAATACCGCCAAGACATTCTGGATCGCTTGGTCAATTGTCAGATATGCCGGCAAGCATTTGGAGCTCATGAAATGAAGAAAGGTGTTCATCCAAAATCTCTCAGGAATCAATTTACGAATCATAACAACACCCTAAAATCCATCCCCGTCCCACTAAAGCAGTTCAAACCCTCCAATATCCTTTTCAGGAAAAGTAAGCGAATAAAAACCTCAAACGAGGGTTCTTGTTCTATTTCCAAAGCCCCATCTTTTGTTTGTGAAATTGATAAATTTTACTGCCCCTTTAAGGACTGCTCCGCAATGTTGATCGATGATGGGCCAGAGGCAGTGTGGGAATCAGAGTGCCCTAATTGTAAAAGATTGTTCTGTGCGCAGTGTAAGGTTTTGCCGGGATTACTTGCGCCTAACTTAAGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

231

Amino Acids

26.59

Weight (kDa)

9.01

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 265, 645
AccB1I GGYRCC 1 cut(s) 66
AciI CCGC 4 cut(s) 166, 224, 280, 570
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 3 cut(s) 33, 104, 542
AfiI CCNNNNNNNGG 1 cut(s) 559
AflII CTTAAG 1 cut(s) 682
AgsI TTSAA 3 cut(s) 92, 152, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AluBI AGCT 2 cut(s) 155, 338
AluI AGCT 2 cut(s) 155, 338
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 1 cut(s) 303
AoxI GGCC 1 cut(s) 590
ApoI RAATTY 3 cut(s) 33, 104, 542
AspLEI GCGC 3 cut(s) 266, 646, 676
AspS9I GGNCC 1 cut(s) 590
AsuC2I CCSGG 1 cut(s) 663
BaeGI GKGCMC 3 cut(s) 71, 254, 620
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 340
BccI CCATC 4 cut(s) 164, 422, 526, 581
BciVI GTATCC 1 cut(s) 54
BcnI CCSGG 1 cut(s) 663
BcoDI GTCTC 1 cut(s) 276
BfrI CTTAAG 1 cut(s) 682
BfuI GTATCC 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 663
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 663
BmsI GCATC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 663
Bsa29I ATCGAT 1 cut(s) 582
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse118I RCCGGY 1 cut(s) 321
Bse3DI GCAATG 2 cut(s) 273, 579
BseCI ATCGAT 1 cut(s) 582
BseGI GGATG 4 cut(s) 25, 175, 361, 414
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMI GCAATG 2 cut(s) 273, 579
BseMII CTCAG 1 cut(s) 388
BseSI GKGCMC 3 cut(s) 71, 254, 620
BshFI GGCC 1 cut(s) 592
BshNI GGYRCC 1 cut(s) 66
BshVI ATCGAT 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 340
BsiSI CCGG 3 cut(s) 124, 322, 662
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 1 cut(s) 592
Bsp1286I GDGCHC 4 cut(s) 71, 254, 340, 620
Bsp143I GATC 2 cut(s) 295, 579
BspACI CCGC 4 cut(s) 166, 224, 280, 570
BspANI GGCC 1 cut(s) 592
BspCNI CTCAG 1 cut(s) 387
BspDI ATCGAT 1 cut(s) 582
BspHI TCATGA 2 cut(s) 157, 340
BspLI GGNNCC 1 cut(s) 68
BspPI GGATC 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 682
BsrDI GCAATG 2 cut(s) 273, 579
BsrFI RCCGGY 1 cut(s) 321
BssAI RCCGGY 1 cut(s) 321
BssMI GATC 2 cut(s) 295, 579
Bst4CI ACNGT 2 cut(s) 66, 249
BstAFI CTTAAG 1 cut(s) 682
BstC8I GCNNGC 2 cut(s) 323, 327
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 4 cut(s) 25, 175, 361, 414
BstHHI GCGC 3 cut(s) 266, 646, 676
BstKTI GATC 2 cut(s) 298, 582
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 2 cut(s) 295, 579
BstMWI GCNNNNNNNGC 2 cut(s) 152, 335
BstSCI CCNGG 1 cut(s) 661
BstSLI GKGCMC 3 cut(s) 71, 254, 620
Bsu15I ATCGAT 1 cut(s) 582
BsuI GTATCC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 592
BsuTUI ATCGAT 1 cut(s) 582
BtsCI GGATG 4 cut(s) 25, 175, 361, 414
BtsI GCAGTG 2 cut(s) 606, 653
BtsIMutI CAGTG 3 cut(s) 254, 606, 653
Cac8I GCNNGC 2 cut(s) 323, 327
CciI TCATGA 2 cut(s) 157, 340
CfoI GCGC 3 cut(s) 266, 646, 676
Cfr10I RCCGGY 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 590
ClaI ATCGAT 1 cut(s) 582
CspCI CAANNNNNGTGG 1 cut(s) 33
CviAII CATG 2 cut(s) 158, 341
CviJI RGCY 7 cut(s) 155, 181, 220, 338, 515, 592, 690
CviKI_1 RGCY 7 cut(s) 155, 181, 220, 338, 515, 592, 690
DdeI CTNAG 1 cut(s) 374
DpnI GATC 2 cut(s) 297, 581
DpnII GATC 2 cut(s) 295, 579
Ecl136II GAGCTC 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 340
Eco53kI GAGCTC 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 340
FaeI CATG 2 cut(s) 161, 344
FaiI YATR 7 cut(s) 101, 110, 159, 213, 319, 342, 396
FaqI GGGAC 1 cut(s) 407
FatI CATG 2 cut(s) 157, 340
FauI CCCGC 1 cut(s) 159
FokI GGATG 4 cut(s) 12, 182, 348, 401
FriOI GRGCYC 1 cut(s) 340
FspI TGCGCA 2 cut(s) 265, 645
GlaI GCGC 3 cut(s) 265, 645, 675
HaeIII GGCC 1 cut(s) 592
HapII CCGG 3 cut(s) 124, 322, 662
HhaI GCGC 3 cut(s) 266, 646, 676
Hin1II CATG 2 cut(s) 161, 344
Hin6I GCGC 3 cut(s) 264, 644, 674
HinP1I GCGC 3 cut(s) 264, 644, 674
HinfI GANTC 6 cut(s) 112, 185, 196, 379, 391, 608
HpaII CCGG 3 cut(s) 124, 322, 662
Hpy188I TCNGA 3 cut(s) 132, 315, 613
Hpy188III TCNNGA 9 cut(s) 29, 38, 58, 158, 193, 293, 341, 376, 460
HpyCH4III ACNGT 2 cut(s) 66, 249
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 335
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 2 cut(s) 161, 344
HspAI GCGC 3 cut(s) 264, 644, 674
KroI GCCGGC 1 cut(s) 321
KroNI GCCGGC 1 cut(s) 323
Kzo9I GATC 2 cut(s) 295, 579
LmnI GCTCC 4 cut(s) 40, 126, 335, 572
LweI GCATC 1 cut(s) 125
MalI GATC 2 cut(s) 297, 581
MboI GATC 2 cut(s) 295, 579
MboII GAAGA 1 cut(s) 361
MfeI CAATTG 1 cut(s) 307
MhlI GDGCHC 4 cut(s) 71, 254, 340, 620
MluCI AATT 9 cut(s) 33, 104, 161, 200, 307, 383, 534, 542, 622
MnlI CCTC 6 cut(s) 231, 454, 484, 493, 589, 680
MroNI GCCGGC 1 cut(s) 321
MseI TTAA 2 cut(s) 558, 683
MspCI CTTAAG 1 cut(s) 682
MspI CCGG 3 cut(s) 124, 322, 662
MspR9I CCNGG 1 cut(s) 663
MunI CAATTG 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 152, 335
NaeI GCCGGC 1 cut(s) 323
NciI CCSGG 1 cut(s) 663
NdeII GATC 2 cut(s) 295, 579
NgoMIV GCCGGC 1 cut(s) 321
NlaIII CATG 2 cut(s) 161, 344
NlaIV GGNNCC 1 cut(s) 68
NsbI TGCGCA 2 cut(s) 265, 645
PagI TCATGA 2 cut(s) 157, 340
PdiI GCCGGC 1 cut(s) 323
PfeI GAWTC 6 cut(s) 112, 185, 196, 379, 391, 608
Psp124BI GAGCTC 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 68
PspPI GGNCC 1 cut(s) 590
SacI GAGCTC 1 cut(s) 340
SaqAI TTAA 2 cut(s) 558, 683
Sau3AI GATC 2 cut(s) 295, 579
Sau96I GGNCC 1 cut(s) 590
ScrFI CCNGG 1 cut(s) 663
SduI GDGCHC 4 cut(s) 71, 254, 340, 620
SetI ASST 5 cut(s) 157, 340, 358, 485, 657
SfaNI GCATC 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 191, 682
SmoI CTYRAG 2 cut(s) 191, 682
Sse9I AATT 9 cut(s) 33, 104, 161, 200, 307, 383, 534, 542, 622
SsiI CCGC 4 cut(s) 166, 224, 280, 570
SstI GAGCTC 1 cut(s) 340
StyD4I CCNGG 1 cut(s) 661
TaaI ACNGT 2 cut(s) 66, 249
TaqI TCGA 1 cut(s) 582
TasI AATT 9 cut(s) 33, 104, 161, 200, 307, 383, 534, 542, 622
TfiI GAWTC 6 cut(s) 112, 185, 196, 379, 391, 608
Tru1I TTAA 2 cut(s) 558, 683
Tru9I TTAA 2 cut(s) 558, 683
TscAI CASTG 3 cut(s) 254, 606, 653
TspDTI ATGAA 6 cut(s) 14, 125, 174, 350, 357, 362
TspRI CASTG 3 cut(s) 254, 606, 653
Vha464I CTTAAG 1 cut(s) 682
XapI RAATTY 3 cut(s) 33, 104, 542
XcmI CCANNNNNNNNNTGG 3 cut(s) 54, 237, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.