Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

5651670 .. 5653420

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGATTGCTTATGACAACTTTATGTGTTCTTCTCTATCTGAACTTGGGGAGTCTTCTAATATTTCGAAGGTTGTTGATGACCCGACTGATTTTGTGTGTACAATCTGCGTGGAACACAAGGAAGCACACGAGAAGTTTGACATAAAAATTTGCAGCCATGCATATTGTACTGATTGCATGGTCAATTACGTGGCCTCCAAGCTTCAAGAGAACATTACCAGCATTAGGTGCCCTGTTCCTGATTGTGTAGGGTTGCTGGAGCCGGAGTATTGCCGGCTGATTCTGCCTCCGGAGATGGTTGATCGGTGGGGAAGTGCATTGTGTGAGGTCGTTATTCTTGGGTCAGAGAAATTTTACTGCCCCTACAAGGATTGCTCTGCAATGTTGATTGATGATGGGACAGAGTTTGTGAGGCAATCGGGGTATCCGAATTGTTGGAGAATGTTCTGCGCTCAGTGTAAGGTTCCTTGGCATGAGGGGATCAAATGCGAGGAGTTTCTAAAGTTGAATAAGGATGAGAGGGAAAAGGAGGATATCATGTTGATGGACCTTGTGCAGAAGCAACAATGGAGCAGATGCCCCAAATGTAGGTTCTATGTGGAAAAATTGGTGGGTTGCATGTTCATGATGTGCAGGTGCAGAACTGCTTTCTGCTATAGATGTGGAGACGTTTTAATGGACAATCATAACCACTACTGTCCCAGCTGTGAGGGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

240

Amino Acids

27.62

Weight (kDa)

5.13

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	115 - 163	9.1e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	624
Acc36I	ACCTGC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	289
AclWI	GGATC	1 cut(s)	488
AcsI	RAATTY	2 cut(s)	147, 350
AfaI	GTAC	2 cut(s)	100, 169
AfiI	CCNNNNNNNGG	3 cut(s)	225, 367, 588
AgsI	TTSAA	2 cut(s)	206, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	2 cut(s)	202, 705
AluI	AGCT	2 cut(s)	202, 705
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	289
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	2 cut(s)	147, 350
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	1 cut(s)	547
AsuII	TTCGAA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	547
BaeGI	GKGCMC	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	3 cut(s)	289, 389, 538
BciVI	GTATCC	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	660
BfmI	CTRYAG	1 cut(s)	655
BfuAI	ACCTGC	1 cut(s)	624
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	3 cut(s)	230, 261, 465
BmsI	GCATC	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	278
Bpu14I	TTCGAA	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	467
BsaWI	WCCGGW	1 cut(s)	289
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 251, 281
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 367, 588
Bse118I	RCCGGY	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	3 cut(s)	225, 367, 588
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	467
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	701
BsgI	GTGCAG	3 cut(s)	575, 652, 658
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	263, 274, 290
BslFI	GGGAC	2 cut(s)	412, 684
BslI	CCNNNNNNNGG	3 cut(s)	225, 367, 588
BsmAI	GTCTC	1 cut(s)	660
BsmBI	CGTCTC	1 cut(s)	660
BsmFI	GGGAC	2 cut(s)	412, 684
BsnI	GGCC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp13I	TCCGGA	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	301, 480
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	466
BspEI	TCCGGA	1 cut(s)	289
BspHI	TCATGA	1 cut(s)	624
BspLI	GGNNCC	3 cut(s)	230, 261, 465
BspMI	ACCTGC	1 cut(s)	624
BspPI	GGATC	1 cut(s)	488
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	273
BsrGI	TGTACA	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	2 cut(s)	301, 480
BssSI	CACGAG	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	467
Bst2BI	CACGAG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	698
BstAPI	GCANNNNNTGC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	190
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	2 cut(s)	304, 483
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	2 cut(s)	301, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 283
BstNSI	RCATGY	1 cut(s)	622
BstSFI	CTRYAG	1 cut(s)	655
BstSLI	GKGCMC	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	1 cut(s)	461
BveI	ACCTGC	1 cut(s)	624
Cac8I	GCNNGC	1 cut(s)	275
CciI	TCATGA	1 cut(s)	624
CfoI	GCGC	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	547
Csp6I	GTAC	2 cut(s)	99, 168
CspCI	CAANNNNNGTGG	2 cut(s)	90, 125
CviAII	CATG	6 cut(s)	158, 178, 473, 538, 619, 625
CviJI	RGCY	6 cut(s)	156, 194, 202, 262, 277, 705
CviKI_1	RGCY	6 cut(s)	156, 194, 202, 262, 277, 705
CviQI	GTAC	2 cut(s)	99, 168
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	2 cut(s)	303, 482
DpnII	GATC	2 cut(s)	301, 480
Eco130I	CCWWGG	1 cut(s)	467
Eco32I	GATATC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	547
EcoRV	GATATC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	467
Esp3I	CGTCTC	1 cut(s)	660
FaeI	CATG	6 cut(s)	161, 181, 476, 541, 622, 628
FaqI	GGGAC	2 cut(s)	412, 684
FatI	CATG	6 cut(s)	157, 177, 472, 537, 618, 624
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	1 cut(s)	154
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	1 cut(s)	154
GsaI	CCCAGC	1 cut(s)	705
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	3 cut(s)	263, 274, 290
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	6 cut(s)	161, 181, 476, 541, 622, 628
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	2 cut(s)	50, 280
HpaII	CCGG	3 cut(s)	263, 274, 290
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	40, 346, 429
Hpy188III	TCNNGA	4 cut(s)	206, 239, 290, 625
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	698
HpyCH4IV	ACGT	2 cut(s)	189, 669
HpyCH4V	TGCA	9 cut(s)	153, 161, 177, 317, 380, 556, 618, 633, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 283
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	2 cut(s)	189, 669
Hsp92II	CATG	6 cut(s)	161, 181, 476, 541, 622, 628
HspAI	GCGC	1 cut(s)	450
Kpn2I	TCCGGA	1 cut(s)	289
KroI	GCCGGC	1 cut(s)	273
KroNI	GCCGGC	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	301, 480
LmnI	GCTCC	2 cut(s)	259, 570
LpnPI	CCDG	9 cut(s)	232, 242, 246, 252, 276, 287, 303, 619, 715
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	1 cut(s)	566
MaeII	ACGT	2 cut(s)	189, 669
MalI	GATC	2 cut(s)	303, 482
MboI	GATC	2 cut(s)	301, 480
MboII	GAAGA	2 cut(s)	21, 45
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	5 cut(s)	147, 184, 350, 430, 605
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	9 cut(s)	205, 297, 319, 405, 469, 484, 513, 523, 703
Mph1103I	ATGCAT	1 cut(s)	163
MroI	TCCGGA	1 cut(s)	289
MroNI	GCCGGC	1 cut(s)	273
MseI	TTAA	1 cut(s)	674
MslI	CAYNNNNRTG	2 cut(s)	542, 623
MspA1I	CMGCKG	1 cut(s)	705
MspI	CCGG	3 cut(s)	263, 274, 290
MwoI	GCNNNNNNNGC	2 cut(s)	228, 283
NaeI	GCCGGC	1 cut(s)	275
NdeII	GATC	2 cut(s)	301, 480
NgoMIV	GCCGGC	1 cut(s)	273
NlaIII	CATG	6 cut(s)	161, 181, 476, 541, 622, 628
NlaIV	GGNNCC	3 cut(s)	230, 261, 465
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	1 cut(s)	622
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	624
PaqCI	CACCTGC	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PdiI	GCCGGC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	155
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Ppu21I	YACGTR	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	701
PspN4I	GGNNCC	3 cut(s)	230, 261, 465
PspPI	GGNCC	1 cut(s)	547
PvuII	CAGCTG	1 cut(s)	705
RsaI	GTAC	2 cut(s)	100, 169
RsaNI	GTAC	2 cut(s)	99, 168
RseI	CAYNNNNRTG	2 cut(s)	542, 623
SaqAI	TTAA	1 cut(s)	674
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	2 cut(s)	301, 480
Sau96I	GGNCC	1 cut(s)	547
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	233
SfaNI	GCATC	1 cut(s)	566
SfcI	CTRYAG	1 cut(s)	655
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	1 cut(s)	547
SmiMI	CAYNNNNRTG	2 cut(s)	542, 623
Sse9I	AATT	5 cut(s)	147, 184, 350, 430, 605
SspI	AATATT	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	1 cut(s)	698
TaiI	ACGT	2 cut(s)	192, 672
TaqI	TCGA	1 cut(s)	65
TasI	AATT	5 cut(s)	147, 184, 350, 430, 605
TatI	WGTACW	2 cut(s)	98, 167
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	674
Tru9I	TTAA	1 cut(s)	674
TscAI	CASTG	1 cut(s)	461
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	613
TspRI	CASTG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	547
XapI	RAATTY	2 cut(s)	147, 350
XceI	RCATGY	1 cut(s)	622
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.