Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

2299305 .. 2300465

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAGCGCAACAGGAGTGGTGTTTATCCAGAAATTCAGATATGCCGGCAAGCATTTGGAGCTCATGAAATGAAGAAAGGTGTTCATCCAGAATCTCTCAGGAATCAATTTACGAATCATAACGACACCCTAAAATTCGTCCCCGTCCCACTGAAGCAGCTCCAAGAAAATATAGCAAGCATAGGGTGCCTTGTACCCGATTGCAAAAGATCACTGGATCCCGAATATTGCCATTCGATTCTGAAACCCGAGGTGTTTGAAAAATCGGGAACATGGTTGTGCAAGGATGTGATTATTGGGTCTCAGAAATTTTACTGCCCCTTTAAGGACTGCTCCACAATGTTGATCGATGATGGGCCAGAGGCAGTGAGGGAATCAGAGTGCCCTAATTGTAAAAGATTGTTCTGTTCGCAGTGTAAGGTTTTTTGGCACGTCGGGATTACTACTGTCGAGTTTAAGAGGCTGAATAAGGATGATACTGAAAAGGATGATCTCATTATGGAGAAACTTGCTGACAAGAAGCACTGGAGAAAGTGCCCAACTTGTGGGATCTATGTGGAAAGATTAGGAGGCTGCACAACAATACGATACAAGTCTGTTTATCCTTCTGGTCTCTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

208

Amino Acids

23.83

Weight (kDa)

8.34

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	100 - 148	1.4e-08	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	186
AccB7I	CCANNNNNTGG	1 cut(s)	545
AclWI	GGATC	3 cut(s)	212, 225, 557
AcsI	RAATTY	3 cut(s)	33, 134, 308
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	325, 545
AgsI	TTSAA	1 cut(s)	260
AjiI	CACGTC	1 cut(s)	433
AluBI	AGCT	2 cut(s)	62, 160
AluI	AGCT	2 cut(s)	62, 160
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	306, 617
AlwI	GGATC	3 cut(s)	212, 225, 557
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	157, 573
ApoI	RAATTY	3 cut(s)	33, 134, 308
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	248
BaeGI	GKGCMC	2 cut(s)	386, 539
BamHI	GGATCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	169, 560
BccI	CCATC	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	306, 617
BisI	GCNGC	2 cut(s)	158, 574
BlsI	GCNGC	2 cut(s)	159, 575
BmeT110I	CYCGRG	1 cut(s)	248
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	2 cut(s)	188, 219
BpmI	CTGGAG	1 cut(s)	547
Bsa29I	ATCGAT	1 cut(s)	348
BsaI	GGTCTC	2 cut(s)	306, 617
BsaJI	CCNNGG	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 545
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	219, 530
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	4 cut(s)	85, 292, 478, 493
BseLI	CCNNNNNNNGG	2 cut(s)	325, 545
BseMII	CTCAG	2 cut(s)	112, 317
BseNI	ACTGG	2 cut(s)	219, 530
BseSI	GKGCMC	2 cut(s)	386, 539
BseXI	GCAGC	2 cut(s)	169, 560
BsgI	GTGCAG	1 cut(s)	559
BshFI	GGCC	1 cut(s)	358
BshNI	GGYRCC	1 cut(s)	186
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	2 cut(s)	125, 131
BslI	CCNNNNNNNGG	2 cut(s)	325, 545
BsmAI	GTCTC	2 cut(s)	306, 617
BsmFI	GGGAC	2 cut(s)	125, 131
BsnI	GGCC	1 cut(s)	358
Bso31I	GGTCTC	2 cut(s)	306, 617
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	3 cut(s)	64, 386, 539
Bsp143I	GATC	5 cut(s)	209, 217, 345, 490, 549
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	2 cut(s)	111, 316
BspDI	ATCGAT	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	188, 219
BspPI	GGATC	3 cut(s)	212, 225, 557
BspT107I	GGYRCC	1 cut(s)	186
BspTNI	GGTCTC	2 cut(s)	306, 617
BsrFI	RCCGGY	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	219, 530
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	5 cut(s)	209, 217, 345, 490, 549
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	620
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	47, 51, 178
BstDEI	CTNAG	2 cut(s)	98, 303
BstF5I	GGATG	4 cut(s)	85, 292, 478, 493
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	5 cut(s)	212, 220, 348, 493, 552
BstMAI	GTCTC	2 cut(s)	306, 617
BstMBI	GATC	5 cut(s)	209, 217, 345, 490, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 186
BstSLI	GKGCMC	2 cut(s)	386, 539
BstV1I	GCAGC	2 cut(s)	169, 560
BstX2I	RGATCY	2 cut(s)	217, 549
BstYI	RGATCY	2 cut(s)	217, 549
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	358
BsuTUI	ATCGAT	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	4 cut(s)	85, 292, 478, 493
BtsI	GCAGTG	2 cut(s)	372, 419
BtsIMutI	CAGTG	5 cut(s)	149, 212, 372, 419, 523
Cac8I	GCNNGC	3 cut(s)	47, 51, 178
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	356
ClaI	ATCGAT	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	194
CspCI	CAANNNNNGTGG	1 cut(s)	33
CviAII	CATG	2 cut(s)	65, 273
CviJI	RGCY	5 cut(s)	62, 160, 358, 463, 573
CviKI_1	RGCY	5 cut(s)	62, 160, 358, 463, 573
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	2 cut(s)	98, 303
DpnI	GATC	5 cut(s)	211, 219, 347, 492, 551
DpnII	GATC	5 cut(s)	209, 217, 345, 490, 549
Eam1104I	CTCTTC	1 cut(s)	620
EarI	CTCTTC	1 cut(s)	620
Ecl136II	GAGCTC	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	64
Eco31I	GGTCTC	2 cut(s)	306, 617
Eco53kI	GAGCTC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	2 cut(s)	68, 276
FaiI	YATR	8 cut(s)	43, 66, 120, 173, 182, 274, 500, 555
FaqI	GGGAC	2 cut(s)	125, 131
FatI	CATG	2 cut(s)	64, 272
Fnu4HI	GCNGC	2 cut(s)	158, 574
FokI	GGATG	4 cut(s)	72, 299, 485, 500
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	158, 574
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	158, 574
GsuI	CTGGAG	1 cut(s)	547
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	1 cut(s)	46
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	68, 276
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	5 cut(s)	92, 103, 115, 238, 374
HpaII	CCGG	1 cut(s)	46
Hpy188I	TCNGA	4 cut(s)	39, 243, 306, 379
Hpy188III	TCNNGA	7 cut(s)	29, 65, 89, 100, 221, 267, 436
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	1 cut(s)	615
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	204, 282, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 186
HpyF3I	CTNAG	2 cut(s)	98, 303
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	68, 276
HspAI	GCGC	1 cut(s)	7
KroI	GCCGGC	1 cut(s)	45
KroNI	GCCGGC	1 cut(s)	47
Kzo9I	GATC	5 cut(s)	209, 217, 345, 490, 549
LmnI	GCTCC	4 cut(s)	4, 59, 165, 338
LpnPI	CCDG	8 cut(s)	42, 59, 85, 102, 200, 372, 511, 594
Lsp1109I	GCAGC	2 cut(s)	169, 560
MaeII	ACGT	1 cut(s)	432
MalI	GATC	5 cut(s)	211, 219, 347, 492, 551
MboI	GATC	5 cut(s)	209, 217, 345, 490, 549
MboII	GAAGA	2 cut(s)	85, 607
MflI	RGATCY	2 cut(s)	217, 549
MhlI	GDGCHC	3 cut(s)	64, 386, 539
MluCI	AATT	5 cut(s)	33, 107, 134, 308, 388
MnlI	CCTC	5 cut(s)	244, 355, 363, 453, 563
MroNI	GCCGGC	1 cut(s)	45
MseI	TTAA	2 cut(s)	324, 456
MslI	CAYNNNNRTG	1 cut(s)	277
MspI	CCGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	59, 186
NaeI	GCCGGC	1 cut(s)	47
NdeII	GATC	5 cut(s)	209, 217, 345, 490, 549
NgoMIV	GCCGGC	1 cut(s)	45
NlaIII	CATG	2 cut(s)	68, 276
NlaIV	GGNNCC	2 cut(s)	188, 219
PagI	TCATGA	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	47
PfeI	GAWTC	5 cut(s)	92, 103, 115, 238, 374
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	2 cut(s)	159, 575
Psp124BI	GAGCTC	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	188, 219
PspPI	GGNCC	1 cut(s)	356
PsuI	RGATCY	2 cut(s)	217, 549
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	277
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	324, 456
SatI	GCNGC	2 cut(s)	158, 574
Sau3AI	GATC	5 cut(s)	209, 217, 345, 490, 549
Sau96I	GGNCC	1 cut(s)	356
SduI	GDGCHC	3 cut(s)	64, 386, 539
SetI	ASST	6 cut(s)	64, 82, 162, 255, 423, 435
SmiMI	CAYNNNNRTG	1 cut(s)	277
Sse9I	AATT	5 cut(s)	33, 107, 134, 308, 388
SspI	AATATT	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	236, 348, 450
TasI	AATT	5 cut(s)	33, 107, 134, 308, 388
TfiI	GAWTC	5 cut(s)	92, 103, 115, 238, 374
Tru1I	TTAA	2 cut(s)	324, 456
Tru9I	TTAA	2 cut(s)	324, 456
TscAI	CASTG	5 cut(s)	156, 219, 372, 419, 530
TseI	GCWGC	2 cut(s)	157, 573
TspDTI	ATGAA	4 cut(s)	74, 81, 86, 607
TspRI	CASTG	5 cut(s)	156, 219, 372, 419, 530
Van91I	CCANNNNNTGG	1 cut(s)	545
XapI	RAATTY	3 cut(s)	33, 134, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.