Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034363.1

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

5079 .. 5399

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034363.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgtgtgatgcagtgatacaggggtcggagaaattctactgcccatatcaggactgctctgctctgctgatcgatgacggggaggaggtggtgagggagtcgcagtgcccgcattgtgggagaatgttttgtgctcagtgcaaggttgcttggcatgtcgggatggattgcagcgagtttcagaggctgagtgtggatgagagagggaatgaagatgttatgttgaggaacctggcgcagagccagaactggaggaggtgtcccagctgcatgttctatgtcgaaaagtctgttggttgctcctacatgaaatgcaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

106

Amino Acids

12.23

Weight (kDa)

5.3

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	306
Acc36I	ACCTGC	1 cut(s)	306
AciI	CCGC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	49, 116
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
Alw21I	GWGCWC	1 cut(s)	136
AlwNI	CAGNNNCTG	1 cut(s)	187
ApeKI	GCWGC	2 cut(s)	171, 267
ApoI	RAATTY	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	110
BaeI	ACNNNNGTAYC	2 cut(s)	8, 41
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	183, 254
BccI	CCATC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	306
BisI	GCNGC	2 cut(s)	172, 268
BlsI	GCNGC	2 cut(s)	173, 269
Bme1390I	CCNGG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	271
Bsa29I	ATCGAT	1 cut(s)	72
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 244, 274
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 116
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	233
BseCI	ATCGAT	1 cut(s)	72
BseGI	GGATG	2 cut(s)	168, 202
BseLI	CCNNNNNNNGG	2 cut(s)	49, 116
BseMII	CTCAG	2 cut(s)	149, 179
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	2 cut(s)	98, 268
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	183, 254
BseYI	CCCAGC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	49, 116
BsmFI	GGGAC	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	110, 136
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	110
BspCNI	CTCAG	2 cut(s)	148, 180
BspDI	ATCGAT	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	230
BspMI	ACCTGC	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	254
BssMI	GATC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	135, 188
BstF5I	GGATG	2 cut(s)	168, 202
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	2 cut(s)	158, 274
BstSCI	CCNGG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	183, 254
Bsu15I	ATCGAT	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	168, 202
BtsI	GCAGTG	2 cut(s)	18, 110
BtsIMutI	CAGTG	3 cut(s)	18, 110, 143
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	110
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	72
CviAII	CATG	3 cut(s)	155, 271, 307
CviJI	RGCY	3 cut(s)	187, 243, 267
CviKI_1	RGCY	3 cut(s)	187, 243, 267
DdeI	CTNAG	2 cut(s)	135, 188
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	158, 274, 310
FaiI	YATR	6 cut(s)	46, 156, 221, 272, 279, 308
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	3 cut(s)	154, 270, 306
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	172, 268
FokI	GGATG	2 cut(s)	175, 209
Fsp4HI	GCNGC	2 cut(s)	172, 268
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	2 cut(s)	172, 268
GsaI	CCCAGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	271
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	3 cut(s)	158, 274, 310
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	28, 183
Hpy188III	TCNNGA	2 cut(s)	50, 160
HpyCH4V	TGCA	5 cut(s)	11, 141, 171, 270, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	2 cut(s)	135, 188
Hsp92II	CATG	3 cut(s)	158, 274, 310
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	8 cut(s)	5, 35, 218, 235, 245, 257, 277, 301
Lsp1109I	GCAGC	2 cut(s)	183, 254
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	1 cut(s)	224
MhlI	GDGCHC	2 cut(s)	110, 136
MluCI	AATT	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	8 cut(s)	76, 79, 87, 177, 197, 219, 246, 249
MspA1I	CMGCKG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	3 cut(s)	158, 274, 310
NlaIV	GGNNCC	1 cut(s)	230
NspI	RCATGY	2 cut(s)	158, 274
PaqCI	CACCTGC	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	173, 269
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	267
SatI	GCNGC	2 cut(s)	172, 268
Sau3AI	GATC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	110, 136
SetI	ASST	6 cut(s)	90, 147, 234, 260, 269, 320
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	231
TaqI	TCGA	2 cut(s)	72, 282
TasI	AATT	1 cut(s)	32
TscAI	CASTG	3 cut(s)	18, 110, 143
TseI	GCWGC	2 cut(s)	171, 267
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	3 cut(s)	18, 110, 143
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	2 cut(s)	158, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.