FvH4_7g07220

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
7169529 .. 7175826
6298 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07220.t1

Sequence Viewer

Length: 1113 bp
ATGGAGCACAACAGGAGCGGTATCCAGGAGCAAACAAACACATTCTGGACACAGTGCCCCTTTTGTTGCACAAAGCTTCAATACTACAGAGACATTCTGGGTTGTTTGCTCAATTGTCATATATGCCGAAAAGCATTTGAAGCTCATGAATTGAAGAAAGATGTTCATAGTGAATCGCTAAAATCTGCCCCGAGTCCCATTACCAAAGCAGGTAACTTCATCGATCTCTCTGCTGAAACCTTAAACTATTACGATAGTGATGAAGAGGTTAGGGTTCTTAGGTTCAAACCCTCCAATATTCCTTTCGGGAAAAGGAAGCGAAACGAGGGTTCCATTTCCAAACCCCCATCTTTTGCATGTGAAATTTGTTTAGAGACTAAGTCAGCACACGAGTCGTTTGGTATCAAAAACTGCACCCATGTATATTGTACTGATTGTGTGGTCAAATACGTGGACTCGAAGCTGGAACAGAATATAGCAAGCATAGGGTGCCTTGTACCCGATTGCAATAAAGGGTCACTGGATCCCGAACATTGCCGTTTGATTCTGAAACCCGAGGTGTTTGAGAAATGGGGAAAGTGGTTGTGCGAGGATGTGATTACTGGGTCTCTGAAATTTTACTGCCCGTTTAAGGACTGCTCCACAATGTTGATTGACGATGGGGAAGAGGTGGTGAGGGAGTCAGAGTGCCCTAGTTGTAAAAGATTGTTCTGTGCACAGTGTAAGGTTCCTTGGCACACTGGGATTACTTGTGAAGAGTTCAAGAAGCTGAATAAGGATGACACTGCAAAGGAGGATATCAAGATGGAGAGACTTGCTTACAAGAAGCATTGGAGAAAGTGCCCAAGGTGTGGGATCTATGTCGAAAGAACCGGAGGCTGCTCAACAGTACACTGCAGGTGTGGAACTTATTTCAGCTTCCATTGTGGACGATGGGGTTGTGCTTCCTGTAGAAACAGAAAGAGAGGTTCTAAAACTTTGGGCTTCTACATGTTCTTTGAAGAGTACAGAAGAATTCACCGATCCTATTCTAAAGATACTCTTGAACTTGTTAATGAGAAATGGAGATCCATGTCTCGTTCTGAAAAAAACCCTATGAGAACCCACCGATGA

Protein Analysis

371

Amino Acids

42.96

Weight (kDa)

8.69

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 196 - 251 5.3e-10 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14250
fragaria_vesca FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 888
Acc36I ACCTGC 2 cut(s) 200, 888
AccB1I GGYRCC 1 cut(s) 489
AccB7I CCANNNNNTGG 1 cut(s) 851
AccBSI CCGCTC 1 cut(s) 18
AciI CCGC 1 cut(s) 18
AclWI GGATC 5 cut(s) 518, 531, 863, 1017, 1062
AcsI RAATTY 3 cut(s) 363, 614, 1014
AfaI GTAC 4 cut(s) 430, 498, 891, 1007
AfiI CCNNNNNNNGG 2 cut(s) 631, 851
AflIII ACRYGT 1 cut(s) 990
AgsI TTSAA 7 cut(s) 80, 140, 154, 286, 763, 1001, 1046
AjnI CCWGG 1 cut(s) 24
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AluBI AGCT 5 cut(s) 76, 143, 463, 769, 918
AluI AGCT 5 cut(s) 76, 143, 463, 769, 918
Alw21I GWGCWC 2 cut(s) 9, 718
Alw26I GTCTC 5 cut(s) 84, 368, 612, 805, 1080
Alw44I GTGCAC 1 cut(s) 714
AlwI GGATC 5 cut(s) 518, 531, 863, 1017, 1062
Ama87I CYCGRG 2 cut(s) 190, 554
ApaLI GTGCAC 1 cut(s) 714
ApeKI GCWGC 1 cut(s) 879
ApoI RAATTY 3 cut(s) 363, 614, 1014
AsuHPI GGTGA 2 cut(s) 685, 1010
AvaI CYCGRG 2 cut(s) 190, 554
BaeGI GKGCMC 4 cut(s) 59, 692, 718, 845
BamHI GGATCC 1 cut(s) 523
BanI GGYRCC 1 cut(s) 489
BauI CACGAG 1 cut(s) 389
Bbv12I GWGCWC 2 cut(s) 9, 718
BbvI GCAGC 1 cut(s) 866
BccI CCATC 4 cut(s) 355, 653, 799, 927
BceAI ACGGC 1 cut(s) 522
BcgI CGANNNNNNTGC 4 cut(s) 212, 246, 375, 409
BciT130I CCWGG 1 cut(s) 26
BciVI GTATCC 1 cut(s) 32
BcoDI GTCTC 5 cut(s) 84, 368, 612, 805, 1080
BfaI CTAG 1 cut(s) 693
BfmI CTRYAG 3 cut(s) 85, 895, 949
BfuAI ACCTGC 2 cut(s) 200, 888
BfuI GTATCC 1 cut(s) 32
BisI GCNGC 1 cut(s) 880
BlsI GCNGC 1 cut(s) 881
Bme1390I CCNGG 1 cut(s) 26
BmeT110I CYCGRG 2 cut(s) 190, 554
BmiI GGNNCC 4 cut(s) 331, 491, 525, 729
BmrFI CCNGG 1 cut(s) 26
BmrI ACTGGG 2 cut(s) 612, 750
BmuI ACTGGG 2 cut(s) 612, 750
Bsa29I ATCGAT 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 451
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 3 cut(s) 555, 731, 845
BsaWI WCCGGW 1 cut(s) 872
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 851
Bse1I ACTGG 3 cut(s) 525, 607, 745
Bse3DI GCAATG 1 cut(s) 532
BseBI CCWGG 1 cut(s) 26
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 3 cut(s) 555, 731, 845
BseGI GGATG 2 cut(s) 598, 784
BseLI CCNNNNNNNGG 2 cut(s) 631, 851
BseMI GCAATG 1 cut(s) 532
BseNI ACTGG 3 cut(s) 525, 607, 745
BseSI GKGCMC 4 cut(s) 59, 692, 718, 845
BseXI GCAGC 1 cut(s) 866
BsgI GTGCAG 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 489
BshVI ATCGAT 1 cut(s) 222
BsiHKAI GWGCWC 2 cut(s) 9, 718
BsiHKCI CYCGRG 2 cut(s) 190, 554
BsiSI CCGG 1 cut(s) 873
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 631, 851
BsmAI GTCTC 5 cut(s) 84, 368, 612, 805, 1080
BsmFI GGGAC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 612
BsoBI CYCGRG 2 cut(s) 190, 554
Bsp1286I GDGCHC 5 cut(s) 9, 59, 692, 718, 845
Bsp143I GATC 5 cut(s) 223, 523, 855, 1022, 1067
BspACI CCGC 1 cut(s) 18
BspDI ATCGAT 1 cut(s) 222
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 4 cut(s) 331, 491, 525, 729
BspMAI CTGCAG 1 cut(s) 899
BspMI ACCTGC 2 cut(s) 200, 888
BspPI GGATC 5 cut(s) 518, 531, 863, 1017, 1062
BspT107I GGYRCC 1 cut(s) 489
BspTNI GGTCTC 1 cut(s) 612
BsrBI CCGCTC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 532
BsrI ACTGG 3 cut(s) 525, 607, 745
BssECI CCNNGG 3 cut(s) 555, 731, 845
BssMI GATC 5 cut(s) 223, 523, 855, 1022, 1067
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 2 cut(s) 731, 845
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 3 cut(s) 54, 720, 889
Bst6I CTCTTC 4 cut(s) 258, 660, 750, 996
BstAPI GCANNNNNTGC 1 cut(s) 489
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 2 cut(s) 278, 378
BstF5I GGATG 2 cut(s) 598, 784
BstKTI GATC 5 cut(s) 226, 526, 858, 1025, 1070
BstMAI GTCTC 5 cut(s) 84, 368, 612, 805, 1080
BstMBI GATC 5 cut(s) 223, 523, 855, 1022, 1067
BstMWI GCNNNNNNNGC 2 cut(s) 140, 489
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 2 cut(s) 360, 994
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 3 cut(s) 85, 895, 949
BstSLI GKGCMC 4 cut(s) 59, 692, 718, 845
BstV1I GCAGC 1 cut(s) 866
BstX2I RGATCY 3 cut(s) 523, 855, 1067
BstYI RGATCY 3 cut(s) 523, 855, 1067
Bsu15I ATCGAT 1 cut(s) 222
BsuI GTATCC 1 cut(s) 32
BsuTUI ATCGAT 1 cut(s) 222
BtsCI GGATG 2 cut(s) 598, 784
BtsI GCAGTG 2 cut(s) 783, 892
BtsIMutI CAGTG 6 cut(s) 59, 518, 725, 738, 783, 892
BveI ACCTGC 2 cut(s) 200, 888
Cac8I GCNNGC 1 cut(s) 481
CciI TCATGA 1 cut(s) 145
ClaI ATCGAT 1 cut(s) 222
Csp6I GTAC 4 cut(s) 429, 497, 890, 1006
CviAII CATG 5 cut(s) 146, 357, 419, 991, 1072
CviJI RGCY 7 cut(s) 76, 143, 463, 769, 879, 918, 984
CviKI_1 RGCY 7 cut(s) 76, 143, 463, 769, 879, 918, 984
CviQI GTAC 4 cut(s) 429, 497, 890, 1006
DdeI CTNAG 2 cut(s) 278, 378
DpnI GATC 5 cut(s) 225, 525, 857, 1024, 1069
DpnII GATC 5 cut(s) 223, 523, 855, 1022, 1067
Eam1104I CTCTTC 4 cut(s) 258, 660, 750, 996
EarI CTCTTC 4 cut(s) 258, 660, 750, 996
Eco130I CCWWGG 2 cut(s) 731, 845
Eco31I GGTCTC 1 cut(s) 612
Eco32I GATATC 1 cut(s) 799
Eco88I CYCGRG 2 cut(s) 190, 554
EcoRI GAATTC 1 cut(s) 1014
EcoRII CCWGG 1 cut(s) 24
EcoRV GATATC 1 cut(s) 799
EcoT14I CCWWGG 2 cut(s) 731, 845
ErhI CCWWGG 2 cut(s) 731, 845
FaeI CATG 5 cut(s) 149, 360, 422, 994, 1075
FalI AAGNNNNNCTT 2 cut(s) 1026, 1058
FaqI GGGAC 1 cut(s) 180
FatI CATG 5 cut(s) 145, 356, 418, 990, 1071
Fnu4HI GCNGC 1 cut(s) 880
FokI GGATG 2 cut(s) 605, 791
Fsp4HI GCNGC 1 cut(s) 880
FspBI CTAG 1 cut(s) 693
GluI GCNGC 1 cut(s) 880
HapII CCGG 1 cut(s) 873
Hin1II CATG 5 cut(s) 149, 360, 422, 994, 1075
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 6 cut(s) 173, 193, 392, 455, 544, 680
HpaII CCGG 1 cut(s) 873
HphI GGTGA 2 cut(s) 685, 1010
Hpy166II GTNNAC 4 cut(s) 454, 716, 892, 929
Hpy188I TCNGA 4 cut(s) 549, 612, 685, 1084
Hpy188III TCNNGA 7 cut(s) 46, 146, 307, 527, 763, 802, 1043
Hpy8I GTNNAC 4 cut(s) 454, 716, 892, 929
HpyCH4III ACNGT 3 cut(s) 54, 720, 889
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 7 cut(s) 69, 356, 414, 507, 716, 788, 897
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 489
HpyF3I CTNAG 2 cut(s) 278, 378
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 5 cut(s) 149, 360, 422, 994, 1075
Kzo9I GATC 5 cut(s) 223, 523, 855, 1022, 1067
LmnI GCTCC 4 cut(s) 4, 15, 28, 644
Lsp1109I GCAGC 1 cut(s) 866
MaeI CTAG 1 cut(s) 693
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 2 cut(s) 212, 516
MalI GATC 5 cut(s) 225, 525, 857, 1024, 1069
MbiI CCGCTC 1 cut(s) 18
MboI GATC 5 cut(s) 223, 523, 855, 1022, 1067
MboII GAAGA 6 cut(s) 166, 275, 677, 767, 1013, 1023
MfeI CAATTG 1 cut(s) 112
MflI RGATCY 3 cut(s) 523, 855, 1067
MhlI GDGCHC 5 cut(s) 9, 59, 692, 718, 845
MluCI AATT 5 cut(s) 112, 149, 363, 614, 1014
MlyI GAGTC 4 cut(s) 202, 401, 449, 689
MseI TTAA 3 cut(s) 242, 630, 1053
MspI CCGG 1 cut(s) 873
MspR9I CCNGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 140, 489
NdeII GATC 5 cut(s) 223, 523, 855, 1022, 1067
NlaIII CATG 5 cut(s) 149, 360, 422, 994, 1075
NlaIV GGNNCC 4 cut(s) 331, 491, 525, 729
NmuCI GTSAC 1 cut(s) 516
NspI RCATGY 2 cut(s) 360, 994
PagI TCATGA 1 cut(s) 145
PaqCI CACCTGC 1 cut(s) 888
PciI ACATGT 1 cut(s) 990
PfeI GAWTC 2 cut(s) 173, 544
PflFI GACNNNGTC 1 cut(s) 379
PflMI CCANNNNNTGG 1 cut(s) 851
PfoI TCCNGGA 1 cut(s) 24
PkrI GCNGC 1 cut(s) 881
PleI GAGTC 4 cut(s) 201, 400, 449, 688
PpsI GAGTC 4 cut(s) 201, 400, 449, 688
Ppu21I YACGTR 1 cut(s) 451
PscI ACATGT 1 cut(s) 990
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 4 cut(s) 331, 491, 525, 729
PstI CTGCAG 1 cut(s) 899
PsuI RGATCY 3 cut(s) 523, 855, 1067
PsyI GACNNNGTC 1 cut(s) 379
RsaI GTAC 4 cut(s) 430, 498, 891, 1007
RsaNI GTAC 4 cut(s) 429, 497, 890, 1006
SaqAI TTAA 3 cut(s) 242, 630, 1053
SatI GCNGC 1 cut(s) 880
Sau3AI GATC 5 cut(s) 223, 523, 855, 1022, 1067
SchI GAGTC 4 cut(s) 202, 401, 449, 689
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 5 cut(s) 9, 59, 692, 718, 845
SfcI CTRYAG 3 cut(s) 85, 895, 949
Sse9I AATT 5 cut(s) 112, 149, 363, 614, 1014
SsiI CCGC 1 cut(s) 18
SspI AATATT 1 cut(s) 298
SspMI CTAG 1 cut(s) 693
StyD4I CCNGG 1 cut(s) 24
StyI CCWWGG 2 cut(s) 731, 845
TaaI ACNGT 3 cut(s) 54, 720, 889
TaiI ACGT 1 cut(s) 453
TaqI TCGA 3 cut(s) 222, 458, 864
TasI AATT 5 cut(s) 112, 149, 363, 614, 1014
TatI WGTACW 3 cut(s) 428, 889, 1005
TfiI GAWTC 2 cut(s) 173, 544
Tru1I TTAA 3 cut(s) 242, 630, 1053
Tru9I TTAA 3 cut(s) 242, 630, 1053
TscAI CASTG 6 cut(s) 59, 525, 725, 745, 790, 899
TseFI GTSAC 1 cut(s) 516
TseI GCWGC 1 cut(s) 879
Tsp45I GTSAC 1 cut(s) 516
TspDTI ATGAA 4 cut(s) 155, 162, 208, 276
TspRI CASTG 6 cut(s) 59, 525, 725, 745, 790, 899
Tth111I GACNNNGTC 1 cut(s) 379
Van91I CCANNNNNTGG 1 cut(s) 851
VneI GTGCAC 1 cut(s) 714
XapI RAATTY 3 cut(s) 363, 614, 1014
XceI RCATGY 2 cut(s) 360, 994
XspI CTAG 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.