E3 ubiquitin-protein ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| IBR | PF01485 | 196 - 251 | 5.3e-10 | IBR domain, a half RING-finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 888 |
| Acc36I | ACCTGC | 2 cut(s) | 200, 888 |
| AccB1I | GGYRCC | 1 cut(s) | 489 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 851 |
| AccBSI | CCGCTC | 1 cut(s) | 18 |
| AciI | CCGC | 1 cut(s) | 18 |
| AclWI | GGATC | 5 cut(s) | 518, 531, 863, 1017, 1062 |
| AcsI | RAATTY | 3 cut(s) | 363, 614, 1014 |
| AfaI | GTAC | 4 cut(s) | 430, 498, 891, 1007 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 631, 851 |
| AflIII | ACRYGT | 1 cut(s) | 990 |
| AgsI | TTSAA | 7 cut(s) | 80, 140, 154, 286, 763, 1001, 1046 |
| AjnI | CCWGG | 1 cut(s) | 24 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 287, 319 |
| AluBI | AGCT | 5 cut(s) | 76, 143, 463, 769, 918 |
| AluI | AGCT | 5 cut(s) | 76, 143, 463, 769, 918 |
| Alw21I | GWGCWC | 2 cut(s) | 9, 718 |
| Alw26I | GTCTC | 5 cut(s) | 84, 368, 612, 805, 1080 |
| Alw44I | GTGCAC | 1 cut(s) | 714 |
| AlwI | GGATC | 5 cut(s) | 518, 531, 863, 1017, 1062 |
| Ama87I | CYCGRG | 2 cut(s) | 190, 554 |
| ApaLI | GTGCAC | 1 cut(s) | 714 |
| ApeKI | GCWGC | 1 cut(s) | 879 |
| ApoI | RAATTY | 3 cut(s) | 363, 614, 1014 |
| AsuHPI | GGTGA | 2 cut(s) | 685, 1010 |
| AvaI | CYCGRG | 2 cut(s) | 190, 554 |
| BaeGI | GKGCMC | 4 cut(s) | 59, 692, 718, 845 |
| BamHI | GGATCC | 1 cut(s) | 523 |
| BanI | GGYRCC | 1 cut(s) | 489 |
| BauI | CACGAG | 1 cut(s) | 389 |
| Bbv12I | GWGCWC | 2 cut(s) | 9, 718 |
| BbvI | GCAGC | 1 cut(s) | 866 |
| BccI | CCATC | 4 cut(s) | 355, 653, 799, 927 |
| BceAI | ACGGC | 1 cut(s) | 522 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 212, 246, 375, 409 |
| BciT130I | CCWGG | 1 cut(s) | 26 |
| BciVI | GTATCC | 1 cut(s) | 32 |
| BcoDI | GTCTC | 5 cut(s) | 84, 368, 612, 805, 1080 |
| BfaI | CTAG | 1 cut(s) | 693 |
| BfmI | CTRYAG | 3 cut(s) | 85, 895, 949 |
| BfuAI | ACCTGC | 2 cut(s) | 200, 888 |
| BfuI | GTATCC | 1 cut(s) | 32 |
| BisI | GCNGC | 1 cut(s) | 880 |
| BlsI | GCNGC | 1 cut(s) | 881 |
| Bme1390I | CCNGG | 1 cut(s) | 26 |
| BmeT110I | CYCGRG | 2 cut(s) | 190, 554 |
| BmiI | GGNNCC | 4 cut(s) | 331, 491, 525, 729 |
| BmrFI | CCNGG | 1 cut(s) | 26 |
| BmrI | ACTGGG | 2 cut(s) | 612, 750 |
| BmuI | ACTGGG | 2 cut(s) | 612, 750 |
| Bsa29I | ATCGAT | 1 cut(s) | 222 |
| BsaAI | YACGTR | 1 cut(s) | 451 |
| BsaI | GGTCTC | 1 cut(s) | 612 |
| BsaJI | CCNNGG | 3 cut(s) | 555, 731, 845 |
| BsaWI | WCCGGW | 1 cut(s) | 872 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 671, 701 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 631, 851 |
| Bse1I | ACTGG | 3 cut(s) | 525, 607, 745 |
| Bse3DI | GCAATG | 1 cut(s) | 532 |
| BseBI | CCWGG | 1 cut(s) | 26 |
| BseCI | ATCGAT | 1 cut(s) | 222 |
| BseDI | CCNNGG | 3 cut(s) | 555, 731, 845 |
| BseGI | GGATG | 2 cut(s) | 598, 784 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 631, 851 |
| BseMI | GCAATG | 1 cut(s) | 532 |
| BseNI | ACTGG | 3 cut(s) | 525, 607, 745 |
| BseSI | GKGCMC | 4 cut(s) | 59, 692, 718, 845 |
| BseXI | GCAGC | 1 cut(s) | 866 |
| BsgI | GTGCAG | 1 cut(s) | 397 |
| BshNI | GGYRCC | 1 cut(s) | 489 |
| BshVI | ATCGAT | 1 cut(s) | 222 |
| BsiHKAI | GWGCWC | 2 cut(s) | 9, 718 |
| BsiHKCI | CYCGRG | 2 cut(s) | 190, 554 |
| BsiSI | CCGG | 1 cut(s) | 873 |
| BslFI | GGGAC | 1 cut(s) | 180 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 631, 851 |
| BsmAI | GTCTC | 5 cut(s) | 84, 368, 612, 805, 1080 |
| BsmFI | GGGAC | 1 cut(s) | 180 |
| Bso31I | GGTCTC | 1 cut(s) | 612 |
| BsoBI | CYCGRG | 2 cut(s) | 190, 554 |
| Bsp1286I | GDGCHC | 5 cut(s) | 9, 59, 692, 718, 845 |
| Bsp143I | GATC | 5 cut(s) | 223, 523, 855, 1022, 1067 |
| BspACI | CCGC | 1 cut(s) | 18 |
| BspDI | ATCGAT | 1 cut(s) | 222 |
| BspHI | TCATGA | 1 cut(s) | 145 |
| BspLI | GGNNCC | 4 cut(s) | 331, 491, 525, 729 |
| BspMAI | CTGCAG | 1 cut(s) | 899 |
| BspMI | ACCTGC | 2 cut(s) | 200, 888 |
| BspPI | GGATC | 5 cut(s) | 518, 531, 863, 1017, 1062 |
| BspT107I | GGYRCC | 1 cut(s) | 489 |
| BspTNI | GGTCTC | 1 cut(s) | 612 |
| BsrBI | CCGCTC | 1 cut(s) | 18 |
| BsrDI | GCAATG | 1 cut(s) | 532 |
| BsrI | ACTGG | 3 cut(s) | 525, 607, 745 |
| BssECI | CCNNGG | 3 cut(s) | 555, 731, 845 |
| BssMI | GATC | 5 cut(s) | 223, 523, 855, 1022, 1067 |
| BssSI | CACGAG | 1 cut(s) | 389 |
| BssT1I | CCWWGG | 2 cut(s) | 731, 845 |
| Bst2BI | CACGAG | 1 cut(s) | 389 |
| Bst2UI | CCWGG | 1 cut(s) | 26 |
| Bst4CI | ACNGT | 3 cut(s) | 54, 720, 889 |
| Bst6I | CTCTTC | 4 cut(s) | 258, 660, 750, 996 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 489 |
| BstBAI | YACGTR | 1 cut(s) | 451 |
| BstC8I | GCNNGC | 1 cut(s) | 481 |
| BstDEI | CTNAG | 2 cut(s) | 278, 378 |
| BstF5I | GGATG | 2 cut(s) | 598, 784 |
| BstKTI | GATC | 5 cut(s) | 226, 526, 858, 1025, 1070 |
| BstMAI | GTCTC | 5 cut(s) | 84, 368, 612, 805, 1080 |
| BstMBI | GATC | 5 cut(s) | 223, 523, 855, 1022, 1067 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 140, 489 |
| BstNI | CCWGG | 1 cut(s) | 26 |
| BstNSI | RCATGY | 2 cut(s) | 360, 994 |
| BstSCI | CCNGG | 1 cut(s) | 24 |
| BstSFI | CTRYAG | 3 cut(s) | 85, 895, 949 |
| BstSLI | GKGCMC | 4 cut(s) | 59, 692, 718, 845 |
| BstV1I | GCAGC | 1 cut(s) | 866 |
| BstX2I | RGATCY | 3 cut(s) | 523, 855, 1067 |
| BstYI | RGATCY | 3 cut(s) | 523, 855, 1067 |
| Bsu15I | ATCGAT | 1 cut(s) | 222 |
| BsuI | GTATCC | 1 cut(s) | 32 |
| BsuTUI | ATCGAT | 1 cut(s) | 222 |
| BtsCI | GGATG | 2 cut(s) | 598, 784 |
| BtsI | GCAGTG | 2 cut(s) | 783, 892 |
| BtsIMutI | CAGTG | 6 cut(s) | 59, 518, 725, 738, 783, 892 |
| BveI | ACCTGC | 2 cut(s) | 200, 888 |
| Cac8I | GCNNGC | 1 cut(s) | 481 |
| CciI | TCATGA | 1 cut(s) | 145 |
| ClaI | ATCGAT | 1 cut(s) | 222 |
| Csp6I | GTAC | 4 cut(s) | 429, 497, 890, 1006 |
| CviAII | CATG | 5 cut(s) | 146, 357, 419, 991, 1072 |
| CviJI | RGCY | 7 cut(s) | 76, 143, 463, 769, 879, 918, 984 |
| CviKI_1 | RGCY | 7 cut(s) | 76, 143, 463, 769, 879, 918, 984 |
| CviQI | GTAC | 4 cut(s) | 429, 497, 890, 1006 |
| DdeI | CTNAG | 2 cut(s) | 278, 378 |
| DpnI | GATC | 5 cut(s) | 225, 525, 857, 1024, 1069 |
| DpnII | GATC | 5 cut(s) | 223, 523, 855, 1022, 1067 |
| Eam1104I | CTCTTC | 4 cut(s) | 258, 660, 750, 996 |
| EarI | CTCTTC | 4 cut(s) | 258, 660, 750, 996 |
| Eco130I | CCWWGG | 2 cut(s) | 731, 845 |
| Eco31I | GGTCTC | 1 cut(s) | 612 |
| Eco32I | GATATC | 1 cut(s) | 799 |
| Eco88I | CYCGRG | 2 cut(s) | 190, 554 |
| EcoRI | GAATTC | 1 cut(s) | 1014 |
| EcoRII | CCWGG | 1 cut(s) | 24 |
| EcoRV | GATATC | 1 cut(s) | 799 |
| EcoT14I | CCWWGG | 2 cut(s) | 731, 845 |
| ErhI | CCWWGG | 2 cut(s) | 731, 845 |
| FaeI | CATG | 5 cut(s) | 149, 360, 422, 994, 1075 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1026, 1058 |
| FaqI | GGGAC | 1 cut(s) | 180 |
| FatI | CATG | 5 cut(s) | 145, 356, 418, 990, 1071 |
| Fnu4HI | GCNGC | 1 cut(s) | 880 |
| FokI | GGATG | 2 cut(s) | 605, 791 |
| Fsp4HI | GCNGC | 1 cut(s) | 880 |
| FspBI | CTAG | 1 cut(s) | 693 |
| GluI | GCNGC | 1 cut(s) | 880 |
| HapII | CCGG | 1 cut(s) | 873 |
| Hin1II | CATG | 5 cut(s) | 149, 360, 422, 994, 1075 |
| HindIII | AAGCTT | 1 cut(s) | 74 |
| HinfI | GANTC | 6 cut(s) | 173, 193, 392, 455, 544, 680 |
| HpaII | CCGG | 1 cut(s) | 873 |
| HphI | GGTGA | 2 cut(s) | 685, 1010 |
| Hpy166II | GTNNAC | 4 cut(s) | 454, 716, 892, 929 |
| Hpy188I | TCNGA | 4 cut(s) | 549, 612, 685, 1084 |
| Hpy188III | TCNNGA | 7 cut(s) | 46, 146, 307, 527, 763, 802, 1043 |
| Hpy8I | GTNNAC | 4 cut(s) | 454, 716, 892, 929 |
| HpyCH4III | ACNGT | 3 cut(s) | 54, 720, 889 |
| HpyCH4IV | ACGT | 1 cut(s) | 450 |
| HpyCH4V | TGCA | 7 cut(s) | 69, 356, 414, 507, 716, 788, 897 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 140, 489 |
| HpyF3I | CTNAG | 2 cut(s) | 278, 378 |
| HpySE526I | ACGT | 1 cut(s) | 450 |
| Hsp92II | CATG | 5 cut(s) | 149, 360, 422, 994, 1075 |
| Kzo9I | GATC | 5 cut(s) | 223, 523, 855, 1022, 1067 |
| LmnI | GCTCC | 4 cut(s) | 4, 15, 28, 644 |
| Lsp1109I | GCAGC | 1 cut(s) | 866 |
| MaeI | CTAG | 1 cut(s) | 693 |
| MaeII | ACGT | 1 cut(s) | 450 |
| MaeIII | GTNAC | 2 cut(s) | 212, 516 |
| MalI | GATC | 5 cut(s) | 225, 525, 857, 1024, 1069 |
| MbiI | CCGCTC | 1 cut(s) | 18 |
| MboI | GATC | 5 cut(s) | 223, 523, 855, 1022, 1067 |
| MboII | GAAGA | 6 cut(s) | 166, 275, 677, 767, 1013, 1023 |
| MfeI | CAATTG | 1 cut(s) | 112 |
| MflI | RGATCY | 3 cut(s) | 523, 855, 1067 |
| MhlI | GDGCHC | 5 cut(s) | 9, 59, 692, 718, 845 |
| MluCI | AATT | 5 cut(s) | 112, 149, 363, 614, 1014 |
| MlyI | GAGTC | 4 cut(s) | 202, 401, 449, 689 |
| MseI | TTAA | 3 cut(s) | 242, 630, 1053 |
| MspI | CCGG | 1 cut(s) | 873 |
| MspR9I | CCNGG | 1 cut(s) | 26 |
| MunI | CAATTG | 1 cut(s) | 112 |
| MvaI | CCWGG | 1 cut(s) | 26 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 140, 489 |
| NdeII | GATC | 5 cut(s) | 223, 523, 855, 1022, 1067 |
| NlaIII | CATG | 5 cut(s) | 149, 360, 422, 994, 1075 |
| NlaIV | GGNNCC | 4 cut(s) | 331, 491, 525, 729 |
| NmuCI | GTSAC | 1 cut(s) | 516 |
| NspI | RCATGY | 2 cut(s) | 360, 994 |
| PagI | TCATGA | 1 cut(s) | 145 |
| PaqCI | CACCTGC | 1 cut(s) | 888 |
| PciI | ACATGT | 1 cut(s) | 990 |
| PfeI | GAWTC | 2 cut(s) | 173, 544 |
| PflFI | GACNNNGTC | 1 cut(s) | 379 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 851 |
| PfoI | TCCNGGA | 1 cut(s) | 24 |
| PkrI | GCNGC | 1 cut(s) | 881 |
| PleI | GAGTC | 4 cut(s) | 201, 400, 449, 688 |
| PpsI | GAGTC | 4 cut(s) | 201, 400, 449, 688 |
| Ppu21I | YACGTR | 1 cut(s) | 451 |
| PscI | ACATGT | 1 cut(s) | 990 |
| Psp6I | CCWGG | 1 cut(s) | 24 |
| PspGI | CCWGG | 1 cut(s) | 24 |
| PspN4I | GGNNCC | 4 cut(s) | 331, 491, 525, 729 |
| PstI | CTGCAG | 1 cut(s) | 899 |
| PsuI | RGATCY | 3 cut(s) | 523, 855, 1067 |
| PsyI | GACNNNGTC | 1 cut(s) | 379 |
| RsaI | GTAC | 4 cut(s) | 430, 498, 891, 1007 |
| RsaNI | GTAC | 4 cut(s) | 429, 497, 890, 1006 |
| SaqAI | TTAA | 3 cut(s) | 242, 630, 1053 |
| SatI | GCNGC | 1 cut(s) | 880 |
| Sau3AI | GATC | 5 cut(s) | 223, 523, 855, 1022, 1067 |
| SchI | GAGTC | 4 cut(s) | 202, 401, 449, 689 |
| ScrFI | CCNGG | 1 cut(s) | 26 |
| SduI | GDGCHC | 5 cut(s) | 9, 59, 692, 718, 845 |
| SfcI | CTRYAG | 3 cut(s) | 85, 895, 949 |
| Sse9I | AATT | 5 cut(s) | 112, 149, 363, 614, 1014 |
| SsiI | CCGC | 1 cut(s) | 18 |
| SspI | AATATT | 1 cut(s) | 298 |
| SspMI | CTAG | 1 cut(s) | 693 |
| StyD4I | CCNGG | 1 cut(s) | 24 |
| StyI | CCWWGG | 2 cut(s) | 731, 845 |
| TaaI | ACNGT | 3 cut(s) | 54, 720, 889 |
| TaiI | ACGT | 1 cut(s) | 453 |
| TaqI | TCGA | 3 cut(s) | 222, 458, 864 |
| TasI | AATT | 5 cut(s) | 112, 149, 363, 614, 1014 |
| TatI | WGTACW | 3 cut(s) | 428, 889, 1005 |
| TfiI | GAWTC | 2 cut(s) | 173, 544 |
| Tru1I | TTAA | 3 cut(s) | 242, 630, 1053 |
| Tru9I | TTAA | 3 cut(s) | 242, 630, 1053 |
| TscAI | CASTG | 6 cut(s) | 59, 525, 725, 745, 790, 899 |
| TseFI | GTSAC | 1 cut(s) | 516 |
| TseI | GCWGC | 1 cut(s) | 879 |
| Tsp45I | GTSAC | 1 cut(s) | 516 |
| TspDTI | ATGAA | 4 cut(s) | 155, 162, 208, 276 |
| TspRI | CASTG | 6 cut(s) | 59, 525, 725, 745, 790, 899 |
| Tth111I | GACNNNGTC | 1 cut(s) | 379 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 851 |
| VneI | GTGCAC | 1 cut(s) | 714 |
| XapI | RAATTY | 3 cut(s) | 363, 614, 1014 |
| XceI | RCATGY | 2 cut(s) | 360, 994 |
| XspI | CTAG | 1 cut(s) | 693 |