Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

95793267 .. 95794887

Gene Structure 1621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTGATCGACGATGGGACAGAGGTAGTGAGAGAATCAGAGTGCCCTAACTGTAAAAGAATGTTCTGTGCGCAGTGTAAGGTTCCTTGGCACTCGGGGATTACTTGTGCCGAGGTTAAGAGGTTGAATAAGGATGATAATGAAAGGGATGATCTTATTATGGAGAAACTTGCTTACAAGAAGCACTGGAGAAAGTGCCCAACGTGTGGGATCTATGTGGAAAGATCAGGAGGCTGCACAACAATGCGATGCAGCTTTGGTGCGGGACTTGTTTCGACTTCCATTGTGGACGACTGGGTTGTCCTTTTTGTGGAAAACACAGAAAGAAAGATTATAGAACTATGGGCTACTTTGTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

120

Amino Acids

13.77

Weight (kDa)

6.11

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	13 - 36	2.5e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
Acc16I	TGCGCA	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	206
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	206, 310
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
AlwI	GGATC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	234, 252
AspLEI	GCGC	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	94
BaeGI	GKGCMC	2 cut(s)	47, 200
BbvI	GCAGC	2 cut(s)	221, 264
BccI	CCATC	1 cut(s)	8
BisI	GCNGC	2 cut(s)	235, 253
BlsI	GCNGC	2 cut(s)	236, 254
BmeT110I	CYCGRG	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	304
BpmI	CTGGAG	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	86, 111
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 310
Bse1I	ACTGG	2 cut(s)	191, 299
BseDI	CCNNGG	2 cut(s)	86, 111
BseGI	GGATG	2 cut(s)	139, 154
BseLI	CCNNNNNNNGG	2 cut(s)	206, 310
BseNI	ACTGG	2 cut(s)	191, 299
BseSI	GKGCMC	2 cut(s)	47, 200
BseXI	GCAGC	2 cut(s)	221, 264
BsgI	GTGCAG	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	94
BslFI	GGGAC	2 cut(s)	31, 279
BslI	CCNNNNNNNGG	2 cut(s)	206, 310
BsmFI	GGGAC	2 cut(s)	31, 279
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	47, 200
Bsp143I	GATC	4 cut(s)	6, 151, 210, 224
BspACI	CCGC	1 cut(s)	263
BspHI	TCATGA	1 cut(s)	359
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	191, 299
BssECI	CCNNGG	2 cut(s)	86, 111
BssMI	GATC	4 cut(s)	6, 151, 210, 224
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	139, 154
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	4 cut(s)	9, 154, 213, 227
BstMBI	GATC	4 cut(s)	6, 151, 210, 224
BstSLI	GKGCMC	2 cut(s)	47, 200
BstV1I	GCAGC	2 cut(s)	221, 264
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	139, 154
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 184
CciI	TCATGA	1 cut(s)	359
CfoI	GCGC	1 cut(s)	73
CviAII	CATG	1 cut(s)	360
CviJI	RGCY	3 cut(s)	234, 255, 347
CviKI_1	RGCY	3 cut(s)	234, 255, 347
DpnI	GATC	4 cut(s)	8, 153, 212, 226
DpnII	GATC	4 cut(s)	6, 151, 210, 224
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	363
FaiI	YATR	5 cut(s)	161, 216, 335, 343, 361
FaqI	GGGAC	2 cut(s)	31, 279
FatI	CATG	1 cut(s)	359
FauI	CCCGC	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	235, 253
FokI	GGATG	2 cut(s)	146, 161
Fsp4HI	GCNGC	2 cut(s)	235, 253
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	2 cut(s)	235, 253
GsuI	CTGGAG	1 cut(s)	208
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	363
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	228, 360
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	237, 252
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	363
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	4 cut(s)	6, 151, 210, 224
LpnPI	CCDG	3 cut(s)	172, 213, 280
Lsp1109I	GCAGC	2 cut(s)	221, 264
LweI	GCATC	1 cut(s)	239
MaeII	ACGT	1 cut(s)	203
MalI	GATC	4 cut(s)	8, 153, 212, 226
MboI	GATC	4 cut(s)	6, 151, 210, 224
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	47, 200
MnlI	CCTC	4 cut(s)	16, 106, 114, 224
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	242
NdeII	GATC	4 cut(s)	6, 151, 210, 224
NlaIII	CATG	1 cut(s)	363
NlaIV	GGNNCC	1 cut(s)	84
NmeAIII	GCCGAG	1 cut(s)	136
NsbI	TGCGCA	1 cut(s)	72
PagI	TCATGA	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	236, 254
PspN4I	GGNNCC	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	235, 253
Sau3AI	GATC	4 cut(s)	6, 151, 210, 224
SduI	GDGCHC	2 cut(s)	47, 200
SetI	ASST	6 cut(s)	27, 84, 117, 125, 206, 257
SfaNI	GCATC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	242
SsiI	CCGC	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	9, 275
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	80, 191
TseI	GCWGC	2 cut(s)	234, 252
TspDTI	ATGAA	2 cut(s)	156, 348
TspRI	CASTG	2 cut(s)	80, 191
Van91I	CCANNNNNTGG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.