Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

28644245 .. 28647751

Gene Structure 3507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1231400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGACACAAGAGAACTCATCAGCGTCTGATGCTCTTCATCTGAATGTGGATGATTTCTACTTTTCCGCACTCTTTGATGATGAAACTTACGACGAGTCTGAGCCAGTTTCAGATTCCAAGTACGCACAAGAGTTGCAGTTCCAAGAGGCTCTAATGTCCTCTTCTGCACTCACCTCCCAATCCACCCACAATGACGGTTCCTCTTCCTCTTCATCATCAGCAACAATCCAAGCAACCCAAGCAATCCAATCCAACCCAATCCATGAAATCCTATTCCCAATTCAGGACACGCGTGAGTCTGGCGAATCGTTGTCACCACAACCATCAACACAAATCCTTTGTGGGATTTGTGTTGAAATGAAAGAGGCTGACGAGATGTTTCGAAATGAGGGCTGCGTTCACTCCTTCTGCGCTGATTGCATAACCAAGCATGTGGCATCCAAAATCCAAGCAAACATTCACGTAGTTTTGTGCCCCGGCTTGGACTGCAGGGCTGTGCTGGAACTTGATACCTGTATGCCAATGCTTCCCAAAGAAGTCATAGAAAGGTGGAATGATGCCCTTTGTGAAGCTATGGTTTTAGGGGCACAAAGACTCTACTGTCCTTTCAGCGACTGCTCAACAGTTTTGATGATCGACAACGAAGGTGAGGAGGCTATAAGAGAGTCGGAGTGTCCCATTTGCCATAGACTGTTCTGTGCACGATGTCAAGTCCCTTGGCATCCAGGAGTTGATTGTGAGGAGTATCGGAGGCTTAACGAGGACGAACGAGGGAGGGCGGATCTTATGGTTAAGGAACTTGCAAAGCAAAAGAAGTGGAAGCGGTGCCCTAGGTGCAAATATTATGTGGAGAAGACTCAAGGTTGTTTGCATATTACTTGCAGGTGCCAATACCAGTTCTGCTATGCGTGTGGAGCAGAATGGACAAGTACTCATGGTGGTTGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0010941 GO:0016020 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031090 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0031966 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0060548 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4 zf-RING_UBOX

Protein Analysis

317

Amino Acids

35.56

Weight (kDa)

4.81

Isoelectric Point (pI)

55.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	183 - 246	9.2e-11	IBR domain, a half RING-finger domain
IBR	PF01485	264 - 315	8.5e-10	IBR domain, a half RING-finger domain
Rcat_RNF216	PF26200	269 - 313	1.1e-06	RNF216 Rcat domain
IBR_1	PF22191	273 - 311	1.4e-07	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	873
AasI	GACNNNNNNGTC	1 cut(s)	600
Acc36I	ACCTGC	1 cut(s)	873
AccB1I	GGYRCC	2 cut(s)	825, 885
AccII	CGCG	1 cut(s)	292
AciI	CCGC	3 cut(s)	66, 779, 823
AclWI	GGATC	1 cut(s)	789
AfaI	GTAC	2 cut(s)	122, 931
AfiI	CCNNNNNNNGG	2 cut(s)	283, 481
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	724
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	1 cut(s)	572
AluI	AGCT	1 cut(s)	572
Alw21I	GWGCWC	1 cut(s)	703
Alw44I	GTGCAC	1 cut(s)	699
AlwI	GGATC	1 cut(s)	789
AlwNI	CAGNNNCTG	2 cut(s)	26, 615
ApaLI	GTGCAC	1 cut(s)	699
ApeKI	GCWGC	1 cut(s)	393
AspA2I	CCTAGG	1 cut(s)	830
AspLEI	GCGC	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	3 cut(s)	163, 306, 659
AsuII	TTCGAA	1 cut(s)	382
AvrII	CCTAGG	1 cut(s)	830
BaeGI	GKGCMC	4 cut(s)	476, 589, 703, 830
BanI	GGYRCC	2 cut(s)	825, 885
BbsI	GAAGAC	1 cut(s)	860
Bbv12I	GWGCWC	1 cut(s)	703
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	477
BfaI	CTAG	1 cut(s)	831
BfmI	CTRYAG	1 cut(s)	487
BfuAI	ACCTGC	1 cut(s)	873
BisI	GCNGC	1 cut(s)	394
BlnI	CCTAGG	1 cut(s)	830
BlsI	GCNGC	1 cut(s)	395
BmcAI	AGTACT	1 cut(s)	931
Bme1390I	CCNGG	2 cut(s)	477, 726
BmiI	GGNNCC	3 cut(s)	199, 827, 887
BmrFI	CCNGG	2 cut(s)	477, 726
BmsI	GCATC	4 cut(s)	19, 446, 547, 730
BpiI	GAAGAC	1 cut(s)	860
Bpu14I	TTCGAA	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	843
BpuMI	CCSGG	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	463
BsaJI	CCNNGG	3 cut(s)	475, 716, 830
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 481
Bse1I	ACTGG	3 cut(s)	104, 895, 946
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	3 cut(s)	475, 716, 830
BseGI	GGATG	3 cut(s)	55, 437, 721
BseLI	CCNNNNNNNGG	2 cut(s)	283, 481
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	3 cut(s)	104, 895, 946
BseRI	GAGGAG	2 cut(s)	665, 755
BseSI	GKGCMC	4 cut(s)	476, 589, 703, 830
BseXI	GCAGC	1 cut(s)	380
BsgI	GTGCAG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	292
BshNI	GGYRCC	2 cut(s)	825, 885
BsiHKAI	GWGCWC	1 cut(s)	703
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	2 cut(s)	660, 698
BslI	CCNNNNNNNGG	2 cut(s)	283, 481
BsmFI	GGGAC	2 cut(s)	660, 698
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	4 cut(s)	476, 589, 703, 830
Bsp143I	GATC	2 cut(s)	633, 781
BspACI	CCGC	3 cut(s)	66, 779, 823
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	292
BspLI	GGNNCC	3 cut(s)	199, 827, 887
BspMAI	CTGCAG	1 cut(s)	491
BspMI	ACCTGC	1 cut(s)	873
BspPI	GGATC	1 cut(s)	789
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	382
BspT107I	GGYRCC	2 cut(s)	825, 885
BsrI	ACTGG	3 cut(s)	104, 895, 946
BssECI	CCNNGG	3 cut(s)	475, 716, 830
BssMI	GATC	2 cut(s)	633, 781
BssT1I	CCWWGG	2 cut(s)	716, 830
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	4 cut(s)	197, 602, 625, 693
Bst6I	CTCTTC	4 cut(s)	39, 166, 208, 214
BstBAI	YACGTR	1 cut(s)	463
BstBI	TTCGAA	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	3 cut(s)	55, 437, 721
BstFNI	CGCG	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	2 cut(s)	636, 784
BstMBI	GATC	2 cut(s)	633, 781
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 239, 417, 486, 834, 914
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	2 cut(s)	475, 724
BstSFI	CTRYAG	1 cut(s)	487
BstSLI	GKGCMC	4 cut(s)	476, 589, 703, 830
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	380
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	781
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	781
BtsCI	GGATG	3 cut(s)	55, 437, 721
BveI	ACCTGC	1 cut(s)	873
CaiI	CAGNNNCTG	2 cut(s)	26, 615
CfoI	GCGC	1 cut(s)	413
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	121, 930
CspCI	CAANNNNNGTGG	2 cut(s)	797, 832
CviAII	CATG	3 cut(s)	263, 431, 935
CviJI	RGCY	9 cut(s)	103, 149, 368, 393, 480, 494, 572, 656, 754
CviKI_1	RGCY	9 cut(s)	103, 149, 368, 393, 480, 494, 572, 656, 754
CviQI	GTAC	2 cut(s)	121, 930
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	2 cut(s)	635, 783
DpnII	GATC	2 cut(s)	633, 781
DrdI	GACNNNNNNGTC	1 cut(s)	600
DseDI	GACNNNNNNGTC	1 cut(s)	600
Eam1104I	CTCTTC	4 cut(s)	39, 166, 208, 214
EarI	CTCTTC	4 cut(s)	39, 166, 208, 214
EciI	GGCGGA	1 cut(s)	794
Eco130I	CCWWGG	2 cut(s)	716, 830
EcoRII	CCWGG	1 cut(s)	724
EcoT14I	CCWWGG	2 cut(s)	716, 830
ErhI	CCWWGG	2 cut(s)	716, 830
FaeI	CATG	3 cut(s)	266, 434, 938
FaqI	GGGAC	2 cut(s)	660, 698
FatI	CATG	3 cut(s)	262, 430, 934
Fnu4HI	GCNGC	1 cut(s)	394
FokI	GGATG	3 cut(s)	62, 424, 708
Fsp4HI	GCNGC	1 cut(s)	394
FspBI	CTAG	1 cut(s)	831
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	1 cut(s)	394
HapII	CCGG	1 cut(s)	477
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	3 cut(s)	266, 434, 938
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HinfI	GANTC	7 cut(s)	95, 113, 296, 305, 594, 665, 856
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	3 cut(s)	163, 306, 659
Hpy166II	GTNNAC	2 cut(s)	400, 701
Hpy188I	TCNGA	6 cut(s)	28, 42, 100, 112, 670, 750
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	2 cut(s)	400, 701
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	415, 638
HpyCH4III	ACNGT	4 cut(s)	197, 602, 625, 693
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	9 cut(s)	136, 167, 420, 489, 701, 803, 837, 871, 882
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 239, 417, 486, 834, 914
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	266, 434, 938
HspAI	GCGC	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	633, 781
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	914
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	4 cut(s)	19, 446, 547, 730
MaeI	CTAG	1 cut(s)	831
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	2 cut(s)	635, 783
MboI	GATC	2 cut(s)	633, 781
MboII	GAAGA	5 cut(s)	26, 153, 195, 201, 865
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	4 cut(s)	476, 589, 703, 830
MluCI	AATT	1 cut(s)	279
MluI	ACGCGT	1 cut(s)	290
MlyI	GAGTC	5 cut(s)	104, 305, 588, 674, 850
MmeI	TCCRAC	2 cut(s)	276, 648
MseI	TTAA	2 cut(s)	756, 792
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	2 cut(s)	477, 726
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	6 cut(s)	29, 239, 417, 486, 834, 914
NciI	CCSGG	1 cut(s)	477
NdeII	GATC	2 cut(s)	633, 781
NlaIII	CATG	3 cut(s)	266, 434, 938
NlaIV	GGNNCC	3 cut(s)	199, 827, 887
NmuCI	GTSAC	1 cut(s)	312
NspI	RCATGY	1 cut(s)	434
NspV	TTCGAA	1 cut(s)	382
PaqCI	CACCTGC	1 cut(s)	873
PciSI	GCTCTTC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	113, 305
PfoI	TCCNGGA	1 cut(s)	724
PkrI	GCNGC	1 cut(s)	395
PleI	GAGTC	5 cut(s)	103, 304, 588, 673, 850
PpsI	GAGTC	5 cut(s)	103, 304, 588, 673, 850
Ppu21I	YACGTR	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	3 cut(s)	199, 827, 887
PstI	CTGCAG	1 cut(s)	491
PstNI	CAGNNNCTG	2 cut(s)	26, 615
PsuI	RGATCY	1 cut(s)	781
RsaI	GTAC	2 cut(s)	122, 931
RsaNI	GTAC	2 cut(s)	121, 930
RseI	CAYNNNNRTG	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	756, 792
SatI	GCNGC	1 cut(s)	394
Sau3AI	GATC	2 cut(s)	633, 781
ScaI	AGTACT	1 cut(s)	931
SchI	GAGTC	5 cut(s)	104, 305, 588, 674, 850
ScrFI	CCNGG	2 cut(s)	477, 726
SduI	GDGCHC	4 cut(s)	476, 589, 703, 830
SetI	ASST	9 cut(s)	176, 465, 515, 551, 574, 649, 836, 865, 887
SfaNI	GCATC	4 cut(s)	19, 446, 547, 730
SfcI	CTRYAG	1 cut(s)	487
SfuI	TTCGAA	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	858
SmoI	CTYRAG	1 cut(s)	858
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	3 cut(s)	66, 779, 823
SspI	AATATT	1 cut(s)	842
SspMI	CTAG	1 cut(s)	831
StyD4I	CCNGG	2 cut(s)	475, 724
StyI	CCWWGG	2 cut(s)	716, 830
TaaI	ACNGT	4 cut(s)	197, 602, 625, 693
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	2 cut(s)	382, 636
TasI	AATT	1 cut(s)	279
TatI	WGTACW	1 cut(s)	929
TfiI	GAWTC	2 cut(s)	113, 305
Tru1I	TTAA	2 cut(s)	756, 792
Tru9I	TTAA	2 cut(s)	756, 792
TseFI	GTSAC	1 cut(s)	312
TseI	GCWGC	1 cut(s)	393
Tsp45I	GTSAC	1 cut(s)	312
TspDTI	ATGAA	5 cut(s)	26, 96, 201, 279, 374
VneI	GTGCAC	1 cut(s)	699
XceI	RCATGY	1 cut(s)	434
XmaJI	CCTAGG	1 cut(s)	830
XspI	CTAG	1 cut(s)	831
ZrmI	AGTACT	1 cut(s)	931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.