Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Reverse (-)

687353 .. 688030

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG009600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAGTTTCTGAATCGGTTGCTCCGATGTCAAATATGCCGGAACGCATTTGAAGCTCATGAATGGCGGGATGGTCTCAGGGATCAATTTCCAAATCATCAAGAGCCAACGCAATTAAATACATTCTGGACGCAGTGCCCCTTTTGTTGCGCAATGTCTGAATACCGCAGAGACATTCTGGATCGCTTGGTCAATTGTCAGATATGCCGTCAAGCATTTGGAGCTCATGAAATGAAGAAAGACGATCAACCTCTCAGGAATCAATTTAGCGATACCCTGAAATCCGCCCCGAGTCCCGCTAAACCAGGTAACTTCATTGATCTCTCTGCTGAAACCCTAAACTATTACGATAGTGATGAAGAGGTTAGGGTTCTTAGGTTCAAACCCTCCAATATCGCTTTTGGGAAAAGAAAGCAAATAAAAACCTCAATAGAGGGTTCTTGTTCTACTTCCAAAGCCCCATCTTTTGTTTGTGAAATTTGTGTGGAGATCAAGCCGGCACACGAATCCTTTGGTATCAAAAATTGCAGCCATGTTTATTGTACTGATTGCGTGGTCAAATATGTGGACTCGAAGCTCCAAGAAAATATAGCAAGCATTGGGTGCCTTGTACCCGATTGCAAAGGGTCACTGGATCCCGAGTATTGCCATTCGATTCTGAAACCCGAGGTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

225

Amino Acids

25.76

Weight (kDa)

6.31

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	603
AciI	CCGC	4 cut(s)	67, 166, 285, 297
AclWI	GGATC	4 cut(s)	90, 189, 629, 642
AcsI	RAATTY	1 cut(s)	477
AfaI	GTAC	2 cut(s)	544, 612
AgsI	TTSAA	2 cut(s)	53, 382
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	3 cut(s)	56, 224, 577
AluI	AGCT	3 cut(s)	56, 224, 577
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	2 cut(s)	80, 165
AlwI	GGATC	4 cut(s)	90, 189, 629, 642
Ama87I	CYCGRG	3 cut(s)	289, 638, 665
ApeKI	GCWGC	1 cut(s)	528
ApoI	RAATTY	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	152
AvaI	CYCGRG	3 cut(s)	289, 638, 665
BaeGI	GKGCMC	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	634
BanI	GGYRCC	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	540
BccI	CCATC	2 cut(s)	65, 469
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	2 cut(s)	80, 165
BisI	GCNGC	1 cut(s)	529
BlsI	GCNGC	1 cut(s)	530
Bme1390I	CCNGG	1 cut(s)	306
BmeT110I	CYCGRG	3 cut(s)	289, 638, 665
BmiI	GGNNCC	2 cut(s)	605, 636
BmrFI	CCNGG	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	666
Bse118I	RCCGGY	1 cut(s)	496
Bse1I	ACTGG	1 cut(s)	636
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	91, 268
BseNI	ACTGG	1 cut(s)	636
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	540
BshNI	GGYRCC	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	226
BsiHKCI	CYCGRG	3 cut(s)	289, 638, 665
BsiSI	CCGG	2 cut(s)	40, 497
BslFI	GGGAC	1 cut(s)	279
BsmAI	GTCTC	2 cut(s)	80, 165
BsmFI	GGGAC	1 cut(s)	279
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	3 cut(s)	289, 638, 665
Bsp1286I	GDGCHC	2 cut(s)	140, 226
Bsp143I	GATC	6 cut(s)	82, 181, 244, 319, 489, 634
BspACI	CCGC	4 cut(s)	67, 166, 285, 297
BspCNI	CTCAG	2 cut(s)	90, 267
BspHI	TCATGA	2 cut(s)	58, 226
BspLI	GGNNCC	2 cut(s)	605, 636
BspPI	GGATC	4 cut(s)	90, 189, 629, 642
BspT107I	GGYRCC	1 cut(s)	603
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	496
BsrI	ACTGG	1 cut(s)	636
BssAI	RCCGGY	1 cut(s)	496
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	6 cut(s)	82, 181, 244, 319, 489, 634
Bst2UI	CCWGG	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	603
BstC8I	GCNNGC	2 cut(s)	498, 595
BstDEI	CTNAG	3 cut(s)	77, 254, 374
BstF5I	GGATG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	6 cut(s)	85, 184, 247, 322, 492, 637
BstMAI	GTCTC	2 cut(s)	80, 165
BstMBI	GATC	6 cut(s)	82, 181, 244, 319, 489, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 221, 603
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	540
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	2 cut(s)	140, 629
Cac8I	GCNNGC	2 cut(s)	498, 595
CciI	TCATGA	2 cut(s)	58, 226
CfoI	GCGC	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	496
CseI	GACGC	1 cut(s)	139
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	543, 611
CviAII	CATG	3 cut(s)	59, 227, 533
CviJI	RGCY	7 cut(s)	56, 106, 224, 458, 496, 531, 577
CviKI_1	RGCY	7 cut(s)	56, 106, 224, 458, 496, 531, 577
CviQI	GTAC	2 cut(s)	543, 611
DdeI	CTNAG	3 cut(s)	77, 254, 374
DpnI	GATC	6 cut(s)	84, 183, 246, 321, 491, 636
DpnII	GATC	6 cut(s)	82, 181, 244, 319, 489, 634
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	224
Eco88I	CYCGRG	3 cut(s)	289, 638, 665
EcoICRI	GAGCTC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	3 cut(s)	62, 230, 536
FaiI	YATR	7 cut(s)	37, 60, 205, 228, 534, 564, 590
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	3 cut(s)	58, 226, 532
FauI	CCCGC	2 cut(s)	60, 304
Fnu4HI	GCNGC	1 cut(s)	529
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	529
FspI	TGCGCA	1 cut(s)	151
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	529
HapII	CCGG	2 cut(s)	40, 497
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	62, 230, 536
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HinfI	GANTC	6 cut(s)	13, 259, 292, 506, 569, 655
HpaII	CCGG	2 cut(s)	40, 497
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	5 cut(s)	12, 26, 160, 201, 660
Hpy188III	TCNNGA	7 cut(s)	59, 101, 127, 179, 227, 256, 638
Hpy8I	GTNNAC	1 cut(s)	568
HpyCH4V	TGCA	2 cut(s)	528, 621
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 221, 603
HpyF3I	CTNAG	3 cut(s)	77, 254, 374
Hsp92II	CATG	3 cut(s)	62, 230, 536
HspAI	GCGC	1 cut(s)	150
KroI	GCCGGC	1 cut(s)	496
KroNI	GCCGGC	1 cut(s)	498
Kzo9I	GATC	6 cut(s)	82, 181, 244, 319, 489, 634
LmnI	GCTCC	3 cut(s)	27, 221, 582
Lsp1109I	GCAGC	1 cut(s)	540
MabI	ACCWGGT	1 cut(s)	304
MaeIII	GTNAC	2 cut(s)	308, 627
MalI	GATC	6 cut(s)	84, 183, 246, 321, 491, 636
MboI	GATC	6 cut(s)	82, 181, 244, 319, 489, 634
MboII	GAAGA	2 cut(s)	247, 371
MfeI	CAATTG	1 cut(s)	193
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	2 cut(s)	140, 226
MluCI	AATT	6 cut(s)	86, 113, 193, 263, 477, 523
MlyI	GAGTC	2 cut(s)	301, 563
MnlI	CCTC	6 cut(s)	261, 355, 397, 427, 436, 661
MroNI	GCCGGC	1 cut(s)	496
MseI	TTAA	2 cut(s)	116, 676
MspI	CCGG	2 cut(s)	40, 497
MspR9I	CCNGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	53, 221, 603
NaeI	GCCGGC	1 cut(s)	498
NdeII	GATC	6 cut(s)	82, 181, 244, 319, 489, 634
NgoMIV	GCCGGC	1 cut(s)	496
NlaIII	CATG	3 cut(s)	62, 230, 536
NlaIV	GGNNCC	2 cut(s)	605, 636
NmuCI	GTSAC	1 cut(s)	627
NsbI	TGCGCA	1 cut(s)	151
PagI	TCATGA	2 cut(s)	58, 226
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PdiI	GCCGGC	1 cut(s)	498
PfeI	GAWTC	4 cut(s)	13, 259, 506, 655
PkrI	GCNGC	1 cut(s)	530
PleI	GAGTC	2 cut(s)	300, 563
PpsI	GAGTC	2 cut(s)	300, 563
Psp124BI	GAGCTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	605, 636
PsuI	RGATCY	1 cut(s)	634
RsaI	GTAC	2 cut(s)	544, 612
RsaNI	GTAC	2 cut(s)	543, 611
SacI	GAGCTC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	116, 676
SatI	GCNGC	1 cut(s)	529
Sau3AI	GATC	6 cut(s)	82, 181, 244, 319, 489, 634
SchI	GAGTC	2 cut(s)	301, 563
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	2 cut(s)	140, 226
SetI	ASST	9 cut(s)	58, 226, 253, 310, 366, 380, 428, 579, 672
SexAI	ACCWGGT	1 cut(s)	304
Sse9I	AATT	6 cut(s)	86, 113, 193, 263, 477, 523
SsiI	CCGC	4 cut(s)	67, 166, 285, 297
SstI	GAGCTC	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	304
TaqI	TCGA	2 cut(s)	572, 653
TasI	AATT	6 cut(s)	86, 113, 193, 263, 477, 523
TatI	WGTACW	1 cut(s)	542
TfiI	GAWTC	4 cut(s)	13, 259, 506, 655
Tru1I	TTAA	2 cut(s)	116, 676
Tru9I	TTAA	2 cut(s)	116, 676
TscAI	CASTG	2 cut(s)	140, 636
TseFI	GTSAC	1 cut(s)	627
TseI	GCWGC	1 cut(s)	528
Tsp45I	GTSAC	1 cut(s)	627
TspDTI	ATGAA	5 cut(s)	75, 243, 248, 304, 372
TspRI	CASTG	2 cut(s)	140, 636
XapI	RAATTY	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.