Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

8649452 .. 8650139

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG106500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTGTGAGGCTGTGATTCTTGGGTCTCAGAAATTTTACTGCCCCTTTAAGGACTGCTCAGCTATGTTGATTGACGATGGGGCAGAGGTTGTGAGGGATTCGGAGTGCCCTAATTGCAATAGAATGTTCTGTGCTCAGTGTAAGGTTCCTTGGCACGCCGGGATTGAGTGTGCGGAGTTTAAGAAGCTGAAGAATGATGAGAAGGGAAATGAGGACATCATGCTAAGGAACCTTGCGCAGAAGAACCAATGGAGGAGGTGTCCAAAGAGTAGGTTCTATGTGGAAAAATTGATAGGTTGCGATACCATGCGGTGCAGGTGCGGTACTTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

111

Amino Acids

12.88

Weight (kDa)

8.25

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	9 - 57	3.1e-10	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	306
Acc16I	TGCGCA	1 cut(s)	237
Acc36I	ACCTGC	1 cut(s)	306
AciI	CCGC	3 cut(s)	173, 310, 321
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	49
AluBI	AGCT	2 cut(s)	62, 187
AluI	AGCT	2 cut(s)	62, 187
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	306
BlpI	GCTNAGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	147, 230
BmrFI	CCNGG	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	3 cut(s)	41, 72, 149
BseRI	GAGGAG	1 cut(s)	268
BseSI	GKGCMC	1 cut(s)	110
BsgI	GTGCAG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	30
Bso31I	GGTCTC	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	110, 136
Bsp1720I	GCTNAGC	1 cut(s)	58
BspACI	CCGC	3 cut(s)	173, 310, 321
BspCNI	CTCAG	3 cut(s)	40, 71, 148
BspLI	GGNNCC	2 cut(s)	147, 230
BspMI	ACCTGC	1 cut(s)	306
BspTNI	GGTCTC	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	4 cut(s)	27, 58, 135, 224
BstHHI	GCGC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	143
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	2 cut(s)	220, 307
CviJI	RGCY	3 cut(s)	11, 62, 187
CviKI_1	RGCY	3 cut(s)	11, 62, 187
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	4 cut(s)	27, 58, 135, 224
Eco130I	CCWWGG	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	2 cut(s)	223, 310
FaiI	YATR	4 cut(s)	65, 221, 279, 308
FatI	CATG	2 cut(s)	219, 306
FspI	TGCGCA	1 cut(s)	237
GlaI	GCGC	1 cut(s)	237
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	223, 310
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	2 cut(s)	16, 98
HpaII	CCGG	1 cut(s)	159
Hpy188I	TCNGA	3 cut(s)	30, 103, 335
HpyAV	CCTTC	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	117, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	4 cut(s)	27, 58, 135, 224
Hsp92II	CATG	2 cut(s)	223, 310
HspAI	GCGC	1 cut(s)	236
LpnPI	CCDG	2 cut(s)	172, 301
MboII	GAAGA	2 cut(s)	202, 253
MhlI	GDGCHC	2 cut(s)	110, 136
MluCI	AATT	3 cut(s)	32, 112, 287
MnlI	CCTC	5 cut(s)	79, 87, 205, 246, 249
MseI	TTAA	2 cut(s)	48, 180
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	1 cut(s)	114
NciI	CCSGG	1 cut(s)	160
NlaIII	CATG	2 cut(s)	223, 310
NlaIV	GGNNCC	2 cut(s)	147, 230
NsbI	TGCGCA	1 cut(s)	237
PaqCI	CACCTGC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	16, 98
PspN4I	GGNNCC	2 cut(s)	147, 230
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	48, 180
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	110, 136
SetI	ASST	9 cut(s)	64, 90, 147, 189, 234, 260, 275, 298, 320
SgeI	CNNG	9 cut(s)	32, 162, 167, 171, 172, 232, 245, 319, 328
Sse9I	AATT	3 cut(s)	32, 112, 287
SsiI	CCGC	3 cut(s)	173, 310, 321
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	149
TasI	AATT	3 cut(s)	32, 112, 287
TfiI	GAWTC	2 cut(s)	16, 98
Tru1I	TTAA	2 cut(s)	48, 180
Tru9I	TTAA	2 cut(s)	48, 180
TscAI	CASTG	1 cut(s)	143
TspRI	CASTG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.