Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000271

Physical Location & Seq

Genomic Coordinates Forward (+)

8992990 .. 8993719

Gene Structure 730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47105

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTGTGAGGCTGTGATTCTTGGGTCTCAGAAATTTTACTGCCCCTTTAAGGACTGCTCAGCTATGTTGATTGACGATGGGGCAGAGGTTGTGAGGGATTCGGAGTGCCCTAATTGCAATAGAATGTTCTGTGCTCAGTGTAAGGTTCCTTGGCACGCCGGGATTGAGTGTGCGGAGTTTAAGAAGCTGAAGAATGATGAGAAGGGAAATGAGGACATCATGCTAAGGAACCTTGCGCAGAAGAACCAATGGAGGAGGTGTCCAAAGAGTAGGTTCTATGTGGAAAAATTGATAGGTTGCGATACCATGCGGTGCAGGTGCGCGCAGAAATTTAGCTCGTGGAATGTTCTCTGGTGGATTTTACGGAAGGGGAAGAGTCGGGGTCGGATATTACAGGCGATAACGGGTAGAGAAGAAGCAGACCTGCTTTCTGATTATTTAATTAAGATCTTAATTGTCTCTCATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

156

Amino Acids

18.06

Weight (kDa)

8.84

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	9 - 57	6.8e-10	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14250
fragaria_vesca	FvH4_1g09490 FvH4_1g09500 FvH4_1g09500 FvH4_1g09510 FvH4_3g00870 FvH4_3g03010 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g27960 FvH4_6g35700 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220 FvH4_7g07220
malus_domestica	MD02G1102400.v1.1 MD02G1103700.v1.1 MD03G1111900.v1.1 MD09G1173800.v1.1 MD09G1230900.v1.1 MD09G1231400.v1.1 MD15G1224200.v1.1
prunus_persica	Prupe.3G031900_v2.0.a1 Prupe.3G107200_v2.0.a1 Prupe.7G191200_v2.0.a1 Prupe.7G191800_v2.0.a1 Prupe.8G007700_v2.0.a1
pyrus_communis	pycom02g08010 pycom02g08140 pycom09g14980 pycom09g15030 pycom15g19900
rosa_chinensis	RchiOBHm_Chr2g0096041 RchiOBHm_Chr2g0096051 RchiOBHm_Chr2g0096061 RchiOBHm_Chr2g0096071 RchiOBHm_Chr2g0096081 RchiOBHm_Chr2g0096221 RchiOBHm_Chr2g0131511 RchiOBHm_Chr2g0147691 RchiOBHm_Chr5g0001281 RchiOBHm_Chr5g0001301
rosa_laevigata	RLG00000016619 RLG00000016620 RLG00000016621 RLG00000016622 RLG00000019200 RLG00000020271 RLG00000025410 RLG00000030919 RLG00000031102 RLG00000031117 RLG00000031119 RLG00000031120
rosa_multiflora	Rmu_co8160592.1_g000001 Rmu_sc0001706.1_g000008 Rmu_sc0002494.1_g000005 Rmu_sc0004189.1_g000040 Rmu_sc0005612.1_g000008 Rmu_sc0005612.1_g000011 Rmu_sc0005612.1_g000012 Rmu_sc0006926.1_g000015 Rmu_sc0013257.1_g000002 Rmu_sc0034363.1_g000001 Rmu_sc0034363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072690 Rroxscaffold_1G00075020 Rroxscaffold_2G00145780 Rroxscaffold_2G00145790 Rroxscaffold_2G00145800 Rroxscaffold_2G00145810 Rroxscaffold_2G00145820 Rroxscaffold_2G00145830 Rroxscaffold_4G00300930 Rroxscaffold_6G00424750
rosa_rugosa	Rorug02G0056000 Rorug02G0056100 Rorug02G0056200 Rorug02G0056300 Rorug02G0056500 Rorug02G0056700 Rorug02G0298000.1 Rorug02G0400900 Rorug02G0401000 Rorug02G0401100 Rorug04G0389500 Rorug04G0389600 Rorug04G0389700 Rorug04G0402300
rosa_samantha	Rh2AG103800 Rh2AG458300 Rh2BG105400 Rh2BG105500 Rh2BG105600 Rh2BG105700 Rh2BG105900 Rh2BG357600 Rh2BG471000 Rh2DG106000 Rh2DG106100 Rh2DG106200 Rh2DG106300 Rh2DG106500 Rh2DG375400 Rh2DG480300 Rh5AG009500 Rh5AG009600 Rh5AG010000 Rh5AG028300 Rh5BG012400 Rh5BG012500 Rh5BG012700 Rh5BG028500
rosa_wichuraiana	Rw2G007950 Rw2G007960 Rw2G007970 Rw2G028490 Rw5G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	306
Acc16I	TGCGCA	1 cut(s)	237
Acc36I	ACCTGC	2 cut(s)	306, 432
AccII	CGCG	1 cut(s)	323
AciI	CCGC	2 cut(s)	173, 310
AcsI	RAATTY	2 cut(s)	32, 329
AcuI	CTGAAG	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	49
AluBI	AGCT	3 cut(s)	62, 187, 336
AluI	AGCT	3 cut(s)	62, 187, 336
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	30, 463
ApoI	RAATTY	2 cut(s)	32, 329
AspLEI	GCGC	3 cut(s)	238, 323, 325
AsuC2I	CCSGG	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	110
BauI	CACGAG	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	30, 463
BfuAI	ACCTGC	2 cut(s)	306, 432
BglII	AGATCT	1 cut(s)	447
BlpI	GCTNAGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	147, 230
BmrFI	CCNGG	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	3 cut(s)	41, 72, 149
BsePI	GCGCGC	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	268
BseSI	GKGCMC	1 cut(s)	110
BsgI	GTGCAG	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	30, 463
Bso31I	GGTCTC	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	110, 136
Bsp143I	GATC	1 cut(s)	447
Bsp1720I	GCTNAGC	1 cut(s)	58
BspACI	CCGC	2 cut(s)	173, 310
BspCNI	CTCAG	3 cut(s)	40, 71, 148
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	147, 230
BspMI	ACCTGC	2 cut(s)	306, 432
BspTNI	GGTCTC	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	149
BssHII	GCGCGC	1 cut(s)	321
BssMI	GATC	1 cut(s)	447
BssSI	CACGAG	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	149
Bst2BI	CACGAG	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	156, 323
BstDEI	CTNAG	4 cut(s)	27, 58, 135, 224
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	3 cut(s)	238, 323, 325
BstKTI	GATC	1 cut(s)	450
BstMAI	GTCTC	2 cut(s)	30, 463
BstMBI	GATC	1 cut(s)	447
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	110
BstUI	CGCG	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	143
BveI	ACCTGC	2 cut(s)	306, 432
Cac8I	GCNNGC	2 cut(s)	156, 323
CfoI	GCGC	3 cut(s)	238, 323, 325
CviAII	CATG	3 cut(s)	220, 307, 464
CviJI	RGCY	4 cut(s)	11, 62, 187, 336
CviKI_1	RGCY	4 cut(s)	11, 62, 187, 336
DdeI	CTNAG	4 cut(s)	27, 58, 135, 224
DpnI	GATC	1 cut(s)	449
DpnII	GATC	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	3 cut(s)	223, 310, 467
FaiI	YATR	5 cut(s)	65, 221, 279, 308, 465
FatI	CATG	3 cut(s)	219, 306, 463
FspI	TGCGCA	1 cut(s)	237
GlaI	GCGC	3 cut(s)	237, 322, 324
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	3 cut(s)	238, 323, 325
Hin1II	CATG	3 cut(s)	223, 310, 467
Hin6I	GCGC	3 cut(s)	236, 321, 323
HinP1I	GCGC	3 cut(s)	236, 321, 323
HinfI	GANTC	3 cut(s)	16, 98, 376
HpaII	CCGG	1 cut(s)	159
Hpy188I	TCNGA	4 cut(s)	30, 103, 387, 433
HpyAV	CCTTC	2 cut(s)	196, 361
HpyCH4V	TGCA	2 cut(s)	117, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	4 cut(s)	27, 58, 135, 224
Hsp92II	CATG	3 cut(s)	223, 310, 467
HspAI	GCGC	3 cut(s)	236, 321, 323
Kzo9I	GATC	1 cut(s)	447
LpnPI	CCDG	5 cut(s)	172, 301, 337, 380, 437
MalI	GATC	1 cut(s)	449
MboI	GATC	1 cut(s)	447
MboII	GAAGA	4 cut(s)	202, 253, 385, 425
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	2 cut(s)	110, 136
MluCI	AATT	6 cut(s)	32, 112, 287, 329, 441, 453
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	365
MnlI	CCTC	5 cut(s)	79, 87, 205, 246, 249
MseI	TTAA	5 cut(s)	48, 180, 440, 444, 452
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	114
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	447
NlaIII	CATG	3 cut(s)	223, 310, 467
NlaIV	GGNNCC	2 cut(s)	147, 230
NsbI	TGCGCA	1 cut(s)	237
PacI	TTAATTAA	1 cut(s)	444
PaqCI	CACCTGC	1 cut(s)	306
PauI	GCGCGC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	16, 98
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	147, 230
PsuI	RGATCY	1 cut(s)	447
PteI	GCGCGC	1 cut(s)	321
SaqAI	TTAA	5 cut(s)	48, 180, 440, 444, 452
Sau3AI	GATC	1 cut(s)	447
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	110, 136
Sse9I	AATT	6 cut(s)	32, 112, 287, 329, 441, 453
SsiI	CCGC	2 cut(s)	173, 310
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	149
TasI	AATT	6 cut(s)	32, 112, 287, 329, 441, 453
TfiI	GAWTC	2 cut(s)	16, 98
Tru1I	TTAA	5 cut(s)	48, 180, 440, 444, 452
Tru9I	TTAA	5 cut(s)	48, 180, 440, 444, 452
TscAI	CASTG	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	143
XapI	RAATTY	2 cut(s)	32, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.